Wall clock time and date at job start Mon Mar 30 2020 03:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47169 * 2 1 4 4 H 1.09000 * 109.47041 * 178.52405 * 3 2 1 5 5 C 1.50701 * 109.47579 * 58.52234 * 3 2 1 6 6 H 1.08003 * 120.00179 * 240.00064 * 5 3 2 7 7 C 1.37880 * 120.00164 * 59.72107 * 5 3 2 8 8 N 1.31516 * 119.99438 * 0.27844 * 7 5 3 9 9 Si 1.86793 * 120.00368 * 180.27750 * 7 5 3 10 10 H 1.48500 * 109.47227 * 90.00269 * 9 7 5 11 11 H 1.48499 * 109.47258 * 210.00142 * 9 7 5 12 12 H 1.48503 * 109.47283 * 330.00246 * 9 7 5 13 13 N 1.46902 * 109.47314 * 298.52118 * 3 2 1 14 14 C 1.47902 * 110.99795 * 80.38900 * 13 3 2 15 15 C 1.54001 * 107.05684 * 214.15798 * 14 13 3 16 16 C 1.54597 * 105.13677 * 1.22297 * 15 14 13 17 17 H 1.08996 * 110.72560 * 263.59879 * 16 15 14 18 18 C 1.53006 * 110.72168 * 140.31544 * 16 15 14 19 19 H 1.09000 * 109.47017 * 301.45175 * 18 16 15 20 20 C 1.53003 * 109.46975 * 61.45053 * 18 16 15 21 21 O 1.42893 * 109.47045 * 181.45173 * 18 16 15 22 22 C 1.48533 * 110.99939 * 322.99388 * 13 3 2 23 23 H 1.08990 * 109.47321 * 188.37997 * 1 2 3 24 24 H 1.09004 * 109.47152 * 308.37950 * 1 2 3 25 25 H 1.08999 * 109.46739 * 68.37621 * 1 2 3 26 26 H 1.08995 * 109.46703 * 239.99876 * 2 1 3 27 27 H 1.09002 * 109.46653 * 119.99498 * 2 1 3 28 28 H 0.97006 * 120.00061 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.91794 * 333.50606 * 14 13 3 30 30 H 1.08996 * 109.91958 * 94.60854 * 14 13 3 31 31 H 1.09003 * 110.31101 * 120.13907 * 15 14 13 32 32 H 1.08998 * 110.30619 * 242.20806 * 15 14 13 33 33 H 1.09007 * 109.46796 * 60.00130 * 20 18 16 34 34 H 1.09001 * 109.46755 * 179.97438 * 20 18 16 35 35 H 1.08996 * 109.47297 * 300.00360 * 20 18 16 36 36 H 0.96695 * 114.00520 * 300.00247 * 21 18 16 37 37 H 1.08999 * 110.66338 * 278.15406 * 22 13 3 38 38 H 1.08997 * 110.66859 * 41.28337 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 0.0265 5 6 1.5081 2.1634 1.2117 6 1 0.8899 3.0406 1.0900 7 6 1.8058 1.6999 2.4757 8 7 2.5586 0.6317 2.6239 9 14 1.1401 2.5891 3.9775 10 1 -0.1787 2.0158 4.3480 11 1 2.0867 2.4252 5.1098 12 1 0.9829 4.0331 3.6686 13 7 1.5798 2.1246 -1.2169 14 6 0.1789 2.5767 -1.0734 15 6 -0.4790 2.4562 -2.4606 16 6 0.6222 1.8818 -3.3811 17 1 1.1271 2.6811 -3.9237 18 6 0.0356 0.8539 -4.3507 19 1 -0.4356 0.0493 -3.7860 20 6 -1.0081 1.5307 -5.2416 21 8 1.0800 0.3164 -5.1645 22 6 1.5902 1.2017 -2.3807 23 1 -0.3633 -1.0166 0.1498 24 1 -0.3634 0.6381 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.7684 0.3058 3.5131 29 1 -0.3445 1.9426 -0.3579 30 1 0.1559 3.6132 -0.7371 31 1 -1.3295 1.7758 -2.4181 32 1 -0.7971 3.4367 -2.8149 33 1 -0.5368 2.3353 -5.8063 34 1 -1.4256 0.7984 -5.9327 35 1 -1.8047 1.9407 -4.6209 36 1 1.5443 0.9774 -5.6960 37 1 2.5919 1.1281 -2.8042 38 1 1.2190 0.2176 -2.0947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165855074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:56 Heat of formation + Delta-G solvation = -60.848813 kcal Electronic energy + Delta-G solvation = -17194.860053 eV Core-core repulsion = 14650.652243 eV Total energy + Delta-G solvation = -2544.207809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90494 -38.31105 -35.64705 -33.60130 -31.97189 -30.33625 -29.79539 -27.72767 -25.47035 -23.81106 -22.36373 -21.11830 -20.73083 -17.98283 -17.75151 -17.10959 -16.63188 -15.99998 -15.79322 -15.16226 -14.92056 -14.72682 -13.92297 -13.89408 -13.49852 -13.14361 -12.99855 -12.77279 -12.71955 -12.54663 -12.45276 -12.12447 -12.04882 -11.94343 -11.65325 -11.55880 -11.35519 -11.08831 -10.76251 -10.68097 -10.46442 -8.74704 -8.08688 -6.19127 1.40020 1.41844 1.51380 2.42331 3.19783 3.44876 3.50311 3.87471 4.02187 4.06165 4.35055 4.42633 4.49916 4.50800 4.54742 4.67909 4.73352 4.88007 4.93131 4.98567 5.03381 5.08786 5.13930 5.25326 5.30257 5.33165 5.46213 5.50307 5.57128 5.67731 5.74554 5.87063 6.12935 6.50876 6.72397 6.93305 6.95631 7.48987 8.96772 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047915 B = 0.007429 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.223297 B = 3768.300128 C = 3978.655114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 C 0.208 3.792 4 H -0.007 1.007 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.528 5.528 14 C 0.027 3.973 15 C -0.116 4.116 16 C -0.109 4.109 17 H 0.086 0.914 18 C 0.115 3.885 19 H 0.084 0.916 20 C -0.176 4.176 21 O -0.579 6.579 22 C 0.031 3.969 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.259 0.741 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.057 0.943 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 1.817 -12.847 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.100 3.900 4 H 0.011 0.989 5 C -0.551 4.551 6 H 0.079 0.921 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.252 5.252 14 C -0.101 4.101 15 C -0.154 4.154 16 C -0.128 4.128 17 H 0.104 0.896 18 C 0.056 3.944 19 H 0.102 0.898 20 C -0.233 4.233 21 O -0.387 6.387 22 C -0.097 4.097 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.514 1.615 -12.498 14.672 hybrid contribution -0.045 0.094 1.260 1.264 sum -7.559 1.709 -11.239 13.651 Atomic orbital electron populations 1.21838 0.96174 0.99448 1.01070 1.21955 0.96274 1.00167 0.99601 1.19170 0.93392 0.89983 0.87457 0.98879 1.21439 1.31171 1.11666 0.90871 0.92138 1.25650 0.95491 0.95715 1.01549 1.70030 1.38430 1.24348 1.23022 0.85647 0.78148 0.79183 0.79244 1.20008 1.21249 1.19433 1.64915 1.20752 1.35063 1.04444 1.23092 0.89462 1.00038 0.97500 1.22429 0.97401 1.01851 0.93677 1.22737 0.96129 0.98003 0.95964 0.89616 1.21890 0.87373 0.94837 0.90309 0.89844 1.22429 0.99423 1.01267 1.00179 1.86547 1.51227 1.39936 1.60976 1.23379 0.99124 0.95786 0.91421 0.94504 0.93292 0.92064 0.94815 0.92085 0.93141 0.91845 0.93324 0.90647 0.89807 0.91195 0.91676 0.90729 0.76388 0.92478 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 7.87 71.98 0.57 -4.84 16 2 C -0.14 -6.81 4.90 30.59 0.15 -6.66 16 3 C 0.21 10.75 2.79 44.17 0.12 10.88 16 4 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 5 C -0.51 -27.96 6.32 25.60 0.16 -27.80 16 6 H 0.06 3.26 6.19 -2.91 -0.02 3.24 16 7 C 0.01 0.81 5.30 84.66 0.45 1.26 16 8 N -0.92 -53.28 11.32 21.45 0.24 -53.04 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 N -0.53 -22.97 5.46 -862.25 -4.71 -27.68 16 14 C 0.03 1.02 4.30 86.45 0.37 1.39 16 15 C -0.12 -3.17 5.00 31.48 0.16 -3.01 16 16 C -0.11 -2.94 2.82 -9.59 -0.03 -2.97 16 17 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 18 C 0.12 2.63 2.99 30.60 0.09 2.72 16 19 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 20 C -0.18 -2.93 9.33 71.98 0.67 -2.26 16 21 O -0.58 -13.86 13.15 -148.98 -1.96 -15.82 16 22 C 0.03 1.12 4.89 86.65 0.42 1.55 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 2.24 6.09 -2.39 -0.01 2.23 16 25 H 0.06 2.28 4.27 -2.39 -0.01 2.27 16 26 H 0.03 1.54 5.96 -2.39 -0.01 1.52 16 27 H 0.06 3.36 6.10 -2.39 -0.01 3.35 16 28 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 29 H 0.06 2.60 3.52 -2.39 -0.01 2.60 16 30 H 0.05 1.93 7.64 -2.39 -0.02 1.91 16 31 H 0.07 1.85 7.33 -2.39 -0.02 1.83 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.16 7.16 -2.39 -0.02 1.14 16 36 H 0.39 6.28 9.05 -74.06 -0.67 5.61 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.95 4.11 -2.39 -0.01 1.94 16 Total: -1.00 -62.39 278.16 -0.88 -63.27 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.38 Total: 17.26 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.14 Total: -29.73 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -4.47 Total: -80.72 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.96 Total: -15.82 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -62.39 -0.88 -63.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165855074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.420 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds