Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 H 1.09000 * 109.47177 * 54.27173 * 3 2 1 5 5 C 1.53010 * 109.47121 * 294.27146 * 3 2 1 6 6 C 1.53002 * 109.46888 * 175.00101 * 5 3 2 7 7 O 1.42902 * 109.46716 * 180.02562 * 6 5 3 8 8 N 1.46897 * 109.47135 * 174.27666 * 3 2 1 9 9 C 1.46903 * 110.99652 * 272.41788 * 8 3 2 10 10 C 1.52997 * 109.47104 * 177.28352 * 9 8 3 11 11 C 1.50696 * 115.55479 * 39.43522 * 10 9 8 12 12 H 1.07998 * 120.00495 * 264.83036 * 11 10 9 13 13 C 1.37881 * 119.99818 * 84.82940 * 11 10 9 14 14 N 1.31518 * 119.99680 * 2.00308 * 13 11 10 15 15 Si 1.86799 * 120.00118 * 182.00300 * 13 11 10 16 16 H 1.48494 * 109.47173 * 60.00036 * 15 13 11 17 17 H 1.48503 * 109.47042 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46985 * 300.00001 * 15 13 11 19 19 C 1.53007 * 117.49378 * 253.73328 * 10 9 8 20 20 C 1.53003 * 117.49838 * 185.11184 * 10 9 8 21 21 H 1.08995 * 109.47321 * 185.47305 * 1 2 3 22 22 H 1.09004 * 109.46740 * 305.47184 * 1 2 3 23 23 H 1.09005 * 109.47611 * 65.47016 * 1 2 3 24 24 H 1.09007 * 109.46881 * 240.00258 * 2 1 3 25 25 H 1.08996 * 109.47316 * 120.00565 * 2 1 3 26 26 H 1.09004 * 109.46793 * 55.00020 * 5 3 2 27 27 H 1.08993 * 109.46743 * 295.00414 * 5 3 2 28 28 H 1.08993 * 109.47072 * 60.00041 * 6 5 3 29 29 H 1.09004 * 109.47032 * 299.99884 * 6 5 3 30 30 H 0.96697 * 113.99674 * 179.97438 * 7 6 5 31 31 H 1.00902 * 111.00222 * 36.36717 * 8 3 2 32 32 H 1.09009 * 109.46875 * 297.27713 * 9 8 3 33 33 H 1.08995 * 109.47585 * 57.27399 * 9 8 3 34 34 H 0.97000 * 119.99738 * 179.97438 * 14 13 11 35 35 H 1.08997 * 117.50272 * 359.97438 * 19 10 9 36 36 H 1.09006 * 117.49849 * 145.02220 * 19 10 9 37 37 H 1.09001 * 117.50154 * 214.97252 * 20 10 9 38 38 H 1.08996 * 117.49923 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9851 0.8342 5 6 1.6509 2.1210 -1.3151 6 6 2.0505 3.5971 -1.2650 7 8 1.6866 4.2309 -2.4930 8 7 3.5024 1.4448 0.1381 9 6 3.8976 1.4333 1.5530 10 6 5.4226 1.3677 1.6561 11 6 6.1785 2.1953 0.6488 12 1 6.5309 1.7430 -0.2664 13 6 6.4202 3.5302 0.8956 14 7 6.0256 4.0715 2.0274 15 14 7.3079 4.5696 -0.3775 16 1 6.5304 4.5738 -1.6426 17 1 7.4418 5.9606 0.1252 18 1 8.6568 4.0011 -0.6274 19 6 6.0449 0.0383 2.0882 20 6 6.0308 1.2259 3.0528 21 1 -0.3634 -1.0229 0.0980 22 1 -0.3633 0.5964 0.8370 23 1 -0.3634 0.4267 -0.9349 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.5736 2.0409 -1.4604 27 1 2.1664 1.6328 -2.1421 28 1 3.1277 3.6771 -1.1197 29 1 1.5350 4.0852 -0.4379 30 1 1.9103 5.1708 -2.5318 31 1 3.9138 0.6687 -0.3584 32 1 3.5394 2.3417 2.0376 33 1 3.4623 0.5635 2.0448 34 1 6.1960 5.0105 2.2012 35 1 5.3677 -0.7893 2.2994 36 1 7.0012 -0.2378 1.6438 37 1 6.9779 1.7310 3.2431 38 1 5.3445 1.1798 3.8983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217848858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = -42.961842 kcal Electronic energy + Delta-G solvation = -16554.705332 eV Core-core repulsion = 14011.273160 eV Total energy + Delta-G solvation = -2543.432172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.94046 -36.52354 -35.60328 -31.85887 -31.67765 -30.13254 -25.98751 -25.02304 -23.16906 -22.13008 -21.04770 -20.06075 -18.92010 -16.84679 -16.00624 -15.28015 -14.82817 -14.50380 -14.17638 -13.98802 -13.65792 -12.98987 -12.90354 -12.44226 -12.29531 -11.72481 -11.63351 -11.24135 -11.13894 -10.83742 -10.78485 -10.66837 -10.58122 -10.42168 -10.25066 -10.07968 -9.44533 -9.30023 -8.86317 -8.27925 -7.98101 -7.37971 -5.88969 -3.90851 3.38691 3.42314 3.46849 4.51765 4.56600 4.88334 5.17418 5.22948 5.38566 5.43151 5.52914 5.55463 5.77934 5.85120 5.93470 6.03862 6.09486 6.11741 6.20790 6.28175 6.34063 6.49312 6.56410 6.61123 6.64551 6.65090 6.78095 7.02205 7.17000 7.48061 7.56396 7.99506 8.00705 8.08613 8.30677 8.59460 9.05626 9.72022 11.20787 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.010354 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.445481 B = 2703.691924 C = 3837.378719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.086 3.914 4 H 0.070 0.930 5 C -0.099 4.099 6 C 0.077 3.923 7 O -0.587 6.587 8 N -0.654 5.654 9 C 0.109 3.891 10 C 0.045 3.955 11 C -0.464 4.464 12 H 0.055 0.945 13 C 0.073 3.927 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.220 4.220 20 C -0.153 4.153 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.374 0.626 31 H 0.335 0.665 32 H 0.065 0.935 33 H -0.005 1.005 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 -3.887 -3.024 9.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.025 4.025 4 H 0.089 0.911 5 C -0.137 4.137 6 C 0.000 4.000 7 O -0.392 6.392 8 N -0.283 5.283 9 C -0.020 4.020 10 C 0.044 3.956 11 C -0.502 4.502 12 H 0.073 0.927 13 C -0.129 4.129 14 N -0.523 5.523 15 Si 0.714 3.286 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.257 4.257 20 C -0.191 4.191 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.220 0.780 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.013 0.987 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.633 -3.617 -3.106 9.862 hybrid contribution 0.481 0.275 -0.084 0.561 sum -8.152 -3.341 -3.190 9.370 Atomic orbital electron populations 1.21772 0.96045 1.01024 1.01802 1.22263 0.96207 0.98763 1.01876 1.21576 0.90351 0.93522 0.97032 0.91142 1.21461 1.00024 0.94327 0.97934 1.22211 1.00867 0.92767 0.84162 1.86375 1.85955 1.27323 1.39527 1.60421 1.04506 1.49955 1.13411 1.21492 0.96239 0.97405 0.86821 1.18914 0.89998 0.92329 0.94367 1.20120 1.33744 0.93449 1.02851 0.92667 1.24854 0.95463 0.97663 0.94908 1.69998 1.46938 1.12326 1.23072 0.86778 0.80119 0.79346 0.82349 1.20162 1.21689 1.20671 1.23092 1.02164 0.92253 1.08213 1.22455 1.02521 1.00397 0.93736 0.93335 0.92890 0.92515 0.91946 0.92135 0.92148 0.91628 0.90855 0.94798 0.78026 0.84665 0.91630 0.98724 0.93447 0.92234 0.90652 0.89891 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.55 37.16 0.35 -1.37 16 2 C -0.15 -2.07 5.37 -26.73 -0.14 -2.21 16 3 C 0.09 1.38 2.06 -67.71 -0.14 1.24 16 4 H 0.07 1.17 7.80 -51.93 -0.40 0.77 16 5 C -0.10 -1.56 5.14 -26.72 -0.14 -1.70 16 6 C 0.08 1.31 6.94 37.16 0.26 1.57 16 7 O -0.59 -9.45 13.66 -35.23 -0.48 -9.93 16 8 N -0.65 -12.65 5.05 -106.72 -0.54 -13.19 16 9 C 0.11 2.35 5.55 -3.82 -0.02 2.33 16 10 C 0.04 1.07 1.73 -155.66 -0.27 0.80 16 11 C -0.46 -12.30 8.15 -34.44 -0.28 -12.58 16 12 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 13 C 0.07 1.98 5.43 -17.82 -0.10 1.88 16 14 N -0.89 -24.89 12.72 55.43 0.71 -24.19 16 15 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.22 -4.76 9.88 -26.72 -0.26 -5.03 16 20 C -0.15 -3.60 9.25 -26.73 -0.25 -3.85 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.63 6.75 -51.93 -0.35 0.28 16 24 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 25 H 0.06 0.86 7.50 -51.93 -0.39 0.47 16 26 H 0.06 0.86 6.49 -51.93 -0.34 0.53 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.47 7.75 -51.93 -0.40 1.06 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.37 4.47 9.12 45.56 0.42 4.89 16 31 H 0.34 6.38 8.41 -39.29 -0.33 6.05 16 32 H 0.07 1.56 8.11 -51.92 -0.42 1.14 16 33 H -0.01 -0.11 7.30 -51.93 -0.38 -0.48 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -28.43 309.88 -7.60 -36.03 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.95 Total: 9.22 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.99 Total: -18.91 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.17 Total: -37.37 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.48 Total: -9.93 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.43 -7.60 -36.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217848858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.931 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds