Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 H 1.09000 * 109.47177 * 54.27173 * 3 2 1 5 5 C 1.53010 * 109.47121 * 294.27146 * 3 2 1 6 6 C 1.53002 * 109.46888 * 175.00101 * 5 3 2 7 7 O 1.42902 * 109.46716 * 180.02562 * 6 5 3 8 8 N 1.46897 * 109.47135 * 174.27666 * 3 2 1 9 9 C 1.46903 * 110.99652 * 272.41788 * 8 3 2 10 10 C 1.52997 * 109.47104 * 177.28352 * 9 8 3 11 11 C 1.50696 * 115.55479 * 39.43522 * 10 9 8 12 12 H 1.07998 * 120.00495 * 264.83036 * 11 10 9 13 13 C 1.37881 * 119.99818 * 84.82940 * 11 10 9 14 14 N 1.31518 * 119.99680 * 2.00308 * 13 11 10 15 15 Si 1.86799 * 120.00118 * 182.00300 * 13 11 10 16 16 H 1.48494 * 109.47173 * 60.00036 * 15 13 11 17 17 H 1.48503 * 109.47042 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46985 * 300.00001 * 15 13 11 19 19 C 1.53007 * 117.49378 * 253.73328 * 10 9 8 20 20 C 1.53003 * 117.49838 * 185.11184 * 10 9 8 21 21 H 1.08995 * 109.47321 * 185.47305 * 1 2 3 22 22 H 1.09004 * 109.46740 * 305.47184 * 1 2 3 23 23 H 1.09005 * 109.47611 * 65.47016 * 1 2 3 24 24 H 1.09007 * 109.46881 * 240.00258 * 2 1 3 25 25 H 1.08996 * 109.47316 * 120.00565 * 2 1 3 26 26 H 1.09004 * 109.46793 * 55.00020 * 5 3 2 27 27 H 1.08993 * 109.46743 * 295.00414 * 5 3 2 28 28 H 1.08993 * 109.47072 * 60.00041 * 6 5 3 29 29 H 1.09004 * 109.47032 * 299.99884 * 6 5 3 30 30 H 0.96697 * 113.99674 * 179.97438 * 7 6 5 31 31 H 1.00902 * 111.00222 * 36.36717 * 8 3 2 32 32 H 1.09009 * 109.46875 * 297.27713 * 9 8 3 33 33 H 1.08995 * 109.47585 * 57.27399 * 9 8 3 34 34 H 0.97000 * 119.99738 * 179.97438 * 14 13 11 35 35 H 1.08997 * 117.50272 * 359.97438 * 19 10 9 36 36 H 1.09006 * 117.49849 * 145.02220 * 19 10 9 37 37 H 1.09001 * 117.50154 * 214.97252 * 20 10 9 38 38 H 1.08996 * 117.49923 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9851 0.8342 5 6 1.6509 2.1210 -1.3151 6 6 2.0505 3.5971 -1.2650 7 8 1.6866 4.2309 -2.4930 8 7 3.5024 1.4448 0.1381 9 6 3.8976 1.4333 1.5530 10 6 5.4226 1.3677 1.6561 11 6 6.1785 2.1953 0.6488 12 1 6.5309 1.7430 -0.2664 13 6 6.4202 3.5302 0.8956 14 7 6.0256 4.0715 2.0274 15 14 7.3079 4.5696 -0.3775 16 1 6.5304 4.5738 -1.6426 17 1 7.4418 5.9606 0.1252 18 1 8.6568 4.0011 -0.6274 19 6 6.0449 0.0383 2.0882 20 6 6.0308 1.2259 3.0528 21 1 -0.3634 -1.0229 0.0980 22 1 -0.3633 0.5964 0.8370 23 1 -0.3634 0.4267 -0.9349 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.5736 2.0409 -1.4604 27 1 2.1664 1.6328 -2.1421 28 1 3.1277 3.6771 -1.1197 29 1 1.5350 4.0852 -0.4379 30 1 1.9103 5.1708 -2.5318 31 1 3.9138 0.6687 -0.3584 32 1 3.5394 2.3417 2.0376 33 1 3.4623 0.5635 2.0448 34 1 6.1960 5.0105 2.2012 35 1 5.3677 -0.7893 2.2994 36 1 7.0012 -0.2378 1.6438 37 1 6.9779 1.7310 3.2431 38 1 5.3445 1.1798 3.8983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217848858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -62.004455 kcal Electronic energy + Delta-G solvation = -16555.531081 eV Core-core repulsion = 14011.273160 eV Total energy + Delta-G solvation = -2544.257922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39763 -38.11234 -36.99042 -33.85254 -33.09383 -31.38847 -27.73529 -26.75413 -24.61649 -23.32699 -22.86161 -21.44396 -20.73596 -18.18770 -17.86816 -16.67531 -16.58090 -16.15297 -15.59291 -15.36853 -15.15079 -14.61965 -14.39219 -13.85184 -13.64599 -13.34694 -13.03010 -12.79291 -12.77755 -12.54826 -12.35370 -12.30117 -12.01069 -11.94639 -11.74524 -11.50355 -11.13545 -10.82566 -10.76786 -10.27636 -9.84890 -8.86679 -7.96724 -6.02160 1.44689 1.46197 1.52333 2.51357 3.33344 3.35294 3.42616 3.62243 4.03949 4.12756 4.28686 4.42052 4.45247 4.51875 4.54636 4.68810 4.69700 4.78140 4.80519 4.87193 5.02299 5.03810 5.13244 5.14636 5.23978 5.29899 5.32838 5.36182 5.47559 5.69486 5.69865 5.90961 6.43245 6.63247 6.83822 6.87587 7.00002 7.62517 9.12071 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.010354 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.445481 B = 2703.691924 C = 3837.378719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.089 3.911 4 H 0.062 0.938 5 C -0.093 4.093 6 C 0.082 3.918 7 O -0.593 6.593 8 N -0.668 5.668 9 C 0.126 3.874 10 C 0.019 3.981 11 C -0.467 4.467 12 H 0.046 0.954 13 C 0.029 3.971 14 N -0.912 5.912 15 Si 0.938 3.062 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.193 4.193 20 C -0.162 4.162 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.391 0.609 31 H 0.337 0.663 32 H 0.035 0.965 33 H 0.012 0.988 34 H 0.253 0.747 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -4.948 -3.798 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C -0.021 4.021 4 H 0.080 0.920 5 C -0.131 4.131 6 C 0.005 3.995 7 O -0.401 6.401 8 N -0.298 5.298 9 C -0.003 4.003 10 C 0.019 3.981 11 C -0.505 4.505 12 H 0.065 0.935 13 C -0.170 4.170 14 N -0.551 5.551 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.230 4.230 20 C -0.201 4.201 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.239 0.761 31 H 0.155 0.845 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.732 -4.677 -3.894 11.479 hybrid contribution 0.826 0.604 0.132 1.031 sum -8.907 -4.073 -3.762 10.492 Atomic orbital electron populations 1.21744 0.94239 1.02144 1.02153 1.22152 0.97712 0.96548 1.01904 1.21586 0.88296 0.95298 0.96907 0.91966 1.21427 1.01117 0.93156 0.97407 1.22070 0.98658 0.94035 0.84772 1.86339 1.85817 1.28954 1.38981 1.60302 1.06896 1.50432 1.12136 1.21154 0.94479 0.96568 0.88094 1.19068 0.91323 0.93835 0.93891 1.20341 1.33399 0.93861 1.02936 0.93547 1.25433 0.96440 0.98778 0.96324 1.70104 1.48341 1.12240 1.24428 0.85946 0.79150 0.77975 0.80398 1.20076 1.21686 1.20389 1.23072 1.02248 0.91931 1.05736 1.22354 1.01576 1.01870 0.94259 0.91802 0.92865 0.91922 0.91355 0.92649 0.90122 0.92145 0.94414 0.94376 0.76063 0.84457 0.94673 0.96961 0.93839 0.89359 0.90778 0.92545 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.55 71.98 0.69 -2.24 16 2 C -0.14 -3.57 5.37 30.59 0.16 -3.41 16 3 C 0.09 2.74 2.06 44.92 0.09 2.83 16 4 H 0.06 2.02 7.80 -2.39 -0.02 2.00 16 5 C -0.09 -2.78 5.14 30.60 0.16 -2.62 16 6 C 0.08 2.75 6.94 71.98 0.50 3.25 16 7 O -0.59 -18.31 13.66 -148.98 -2.04 -20.34 16 8 N -0.67 -25.44 5.05 -491.55 -2.48 -27.92 16 9 C 0.13 5.38 5.55 86.30 0.48 5.86 16 10 C 0.02 0.92 1.73 -52.93 -0.09 0.83 16 11 C -0.47 -24.89 8.15 25.60 0.21 -24.69 16 12 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 13 C 0.03 1.59 5.43 84.66 0.46 2.05 16 14 N -0.91 -52.16 12.72 21.45 0.27 -51.89 16 15 Si 0.94 44.22 29.54 68.60 2.03 46.24 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 C -0.19 -8.02 9.88 30.60 0.30 -7.71 16 20 C -0.16 -7.61 9.25 30.60 0.28 -7.33 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.06 1.20 6.75 -2.38 -0.02 1.18 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.05 1.44 7.50 -2.39 -0.02 1.42 16 26 H 0.08 2.10 6.49 -2.39 -0.02 2.08 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.53 7.75 -2.39 -0.02 1.51 16 29 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.39 8.84 9.12 -74.06 -0.68 8.17 16 31 H 0.34 12.50 8.41 -89.69 -0.75 11.74 16 32 H 0.03 1.69 8.11 -2.38 -0.02 1.67 16 33 H 0.01 0.48 7.30 -2.39 -0.02 0.46 16 34 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.09 3.17 8.08 -2.39 -0.02 3.15 16 36 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -59.98 309.88 0.63 -59.36 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.40 Total: 27.74 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 3.24 Total: -33.18 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.21 Total: -79.81 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -2.04 Total: -20.34 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -59.98 0.63 -59.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217848858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.649 kcal (2) G-P(sol) polarization free energy of solvation -59.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds