Wall clock time and date at job start Mon Mar 30 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47170 * 54.99994 * 3 2 1 5 5 O 1.42896 * 109.46919 * 294.99662 * 3 2 1 6 6 C 1.53001 * 109.46748 * 175.00006 * 3 2 1 7 7 C 1.53006 * 109.46746 * 184.99953 * 6 3 2 8 8 N 1.46900 * 109.46867 * 180.98179 * 7 6 3 9 9 C 1.46900 * 110.99690 * 175.89092 * 8 7 6 10 10 C 1.53002 * 109.46886 * 182.67657 * 9 8 7 11 11 C 1.50700 * 115.54824 * 64.79371 * 10 9 8 12 12 H 1.08000 * 120.00389 * 266.99644 * 11 10 9 13 13 C 1.37879 * 120.00147 * 86.99938 * 11 10 9 14 14 N 1.31511 * 120.00366 * 180.32389 * 13 11 10 15 15 Si 1.86801 * 119.99696 * 0.32210 * 13 11 10 16 16 H 1.48507 * 109.46975 * 84.93824 * 15 13 11 17 17 H 1.48507 * 109.47131 * 204.93167 * 15 13 11 18 18 H 1.48497 * 109.47427 * 324.93634 * 15 13 11 19 19 C 1.52995 * 117.50198 * 279.12299 * 10 9 8 20 20 C 1.52998 * 117.49778 * 210.45984 * 10 9 8 21 21 H 1.08999 * 109.47296 * 299.99949 * 1 2 3 22 22 H 1.09006 * 109.46995 * 59.99610 * 1 2 3 23 23 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47296 * 240.00051 * 2 1 3 25 25 H 1.08998 * 109.47408 * 119.99902 * 2 1 3 26 26 H 0.96692 * 114.00647 * 300.00255 * 5 3 2 27 27 H 1.08999 * 109.47064 * 65.00022 * 6 3 2 28 28 H 1.08998 * 109.47057 * 304.99884 * 6 3 2 29 29 H 1.09004 * 109.46687 * 60.98631 * 7 6 3 30 30 H 1.08993 * 109.46970 * 300.98428 * 7 6 3 31 31 H 1.00896 * 111.00284 * 299.84575 * 8 7 6 32 32 H 1.08997 * 109.47164 * 302.67872 * 9 8 7 33 33 H 1.09000 * 109.47205 * 62.68227 * 9 8 7 34 34 H 0.96999 * 120.00104 * 180.02562 * 14 13 11 35 35 H 1.09004 * 117.49675 * 0.02562 * 19 10 9 36 36 H 1.08995 * 117.50323 * 145.02373 * 19 10 9 37 37 H 1.09002 * 117.50159 * 214.98277 * 20 10 9 38 38 H 1.09000 * 117.49974 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 7 5.5303 2.8882 0.3482 9 6 6.0533 4.2607 0.3721 10 6 7.5824 4.2233 0.4062 11 6 8.2456 3.6393 -0.8146 12 1 8.4978 2.5895 -0.8421 13 6 8.5306 4.4453 -1.8964 14 7 9.1035 3.9345 -2.9642 15 14 8.1027 6.2629 -1.8452 16 1 9.1987 7.0109 -1.1783 17 1 7.9290 6.7698 -3.2303 18 1 6.8405 6.4532 -1.0865 19 6 8.2532 3.9790 1.7594 20 6 8.3014 5.3693 1.1207 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0141 1.6543 -2.0139 27 1 4.0029 0.9836 -0.7596 28 1 3.8570 0.8800 1.0113 29 1 3.6401 3.3401 1.1461 30 1 3.7572 3.4538 -0.6264 31 1 5.8403 2.3690 1.1559 32 1 5.7226 4.7911 -0.5209 33 1 5.6827 4.7754 1.2586 34 1 9.3043 4.5016 -3.7251 35 1 7.6050 3.8446 2.6254 36 1 9.1743 3.3964 1.7668 37 1 9.2543 5.7007 0.7080 38 1 7.6850 6.1502 1.5661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218812062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:20 Heat of formation + Delta-G solvation = -42.964008 kcal Electronic energy + Delta-G solvation = -15937.845410 eV Core-core repulsion = 13394.413144 eV Total energy + Delta-G solvation = -2543.432266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.31319 -37.28214 -34.68025 -32.89312 -31.94081 -30.39088 -26.44169 -25.27670 -23.46593 -21.73205 -21.36608 -21.12045 -18.82520 -16.45788 -16.36616 -15.86141 -15.21068 -14.96596 -14.49839 -14.02462 -13.54704 -13.34348 -13.10118 -12.73565 -12.44794 -12.33525 -12.03957 -11.60313 -11.43081 -11.11968 -11.05639 -10.75534 -10.65506 -10.51605 -10.35097 -10.07927 -9.80199 -9.46037 -8.97611 -8.46593 -8.39758 -7.63269 -5.96849 -3.95913 3.36691 3.45298 3.49117 4.27137 4.53084 4.54740 4.81670 4.90673 5.00674 5.20320 5.25985 5.30805 5.40384 5.56194 5.61237 5.75278 5.79263 5.86727 5.91619 6.01954 6.09251 6.09588 6.20916 6.23124 6.40177 6.41086 6.48291 6.56393 6.77412 7.11833 7.24457 7.67293 7.79666 7.86200 8.10713 8.66517 9.08405 9.66869 11.15964 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.005728 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.297352 B = 4886.842326 C = 5196.749599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.107 3.893 4 H 0.093 0.907 5 O -0.562 6.562 6 C -0.148 4.148 7 C 0.063 3.937 8 N -0.667 5.667 9 C 0.100 3.900 10 C 0.008 3.992 11 C -0.461 4.461 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.904 5.904 15 Si 0.881 3.119 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.264 1.264 19 C -0.184 4.184 20 C -0.206 4.206 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.375 0.625 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.332 0.668 32 H 0.068 0.932 33 H 0.000 1.000 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 -4.580 7.169 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.047 3.953 4 H 0.111 0.889 5 O -0.368 6.368 6 C -0.186 4.186 7 C -0.067 4.067 8 N -0.297 5.297 9 C -0.029 4.029 10 C 0.007 3.993 11 C -0.498 4.498 12 H 0.096 0.904 13 C -0.128 4.128 14 N -0.543 5.543 15 Si 0.710 3.290 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.189 1.189 19 C -0.221 4.221 20 C -0.243 4.243 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.223 0.777 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.698 -4.209 6.706 15.821 hybrid contribution -0.049 0.926 0.562 1.084 sum -13.747 -3.283 7.268 15.893 Atomic orbital electron populations 1.21707 0.95445 1.01172 1.02264 1.22244 0.96759 0.97592 1.02793 1.21951 0.93546 0.92186 0.87592 0.88917 1.86542 1.76889 1.57557 1.15790 1.22271 0.94963 0.97975 1.03368 1.21861 0.88922 0.95839 1.00034 1.60172 1.06933 1.15456 1.47129 1.21706 0.95282 0.87904 0.98015 1.19455 0.90029 0.97134 0.92718 1.20148 1.36685 0.96878 0.96127 0.90424 1.24934 0.94501 0.98204 0.95127 1.69889 1.43020 1.35943 1.05417 0.86874 0.79654 0.86230 0.76271 1.20584 1.22397 1.18895 1.22791 1.03023 0.99245 0.97046 1.23006 1.03071 0.91422 1.06840 0.92947 0.92118 0.93077 0.91534 0.91199 0.77722 0.90427 0.91511 0.96766 0.90775 0.85094 0.91375 0.98191 0.92835 0.91503 0.89567 0.89332 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.92 16 2 C -0.16 -1.43 5.61 -26.73 -0.15 -1.58 16 3 C 0.11 1.18 2.97 -26.73 -0.08 1.10 16 4 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 5 O -0.56 -6.88 12.39 -35.23 -0.44 -7.32 16 6 C -0.15 -1.88 5.19 -26.73 -0.14 -2.02 16 7 C 0.06 1.00 5.59 -3.82 -0.02 0.98 16 8 N -0.67 -12.74 6.36 -113.78 -0.72 -13.47 16 9 C 0.10 2.13 5.21 -3.82 -0.02 2.11 16 10 C 0.01 0.18 1.01 -155.66 -0.16 0.03 16 11 C -0.46 -12.97 9.33 -34.44 -0.32 -13.29 16 12 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 15 Si 0.88 22.24 24.78 -169.99 -4.21 18.03 16 16 H -0.28 -6.90 7.01 56.52 0.40 -6.50 16 17 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 18 H -0.26 -6.37 5.95 56.52 0.34 -6.04 16 19 C -0.18 -3.76 9.96 -26.69 -0.27 -4.02 16 20 C -0.21 -4.46 7.60 -26.69 -0.20 -4.66 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.38 3.60 9.04 45.56 0.41 4.01 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 1.28 7.78 -51.93 -0.40 0.88 16 31 H 0.33 5.88 8.81 -39.29 -0.35 5.53 16 32 H 0.07 1.58 6.72 -51.93 -0.35 1.23 16 33 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.09 2.03 7.09 -51.93 -0.37 1.66 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -30.90 306.59 -7.23 -38.13 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.16 Total: 7.46 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.09 Total: -20.26 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.05 Total: -40.67 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.44 Total: -7.32 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.21 Total: 18.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.90 -7.23 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218812062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.831 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds