Wall clock time and date at job start Mon Mar 30 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47170 * 54.99994 * 3 2 1 5 5 O 1.42896 * 109.46919 * 294.99662 * 3 2 1 6 6 C 1.53001 * 109.46748 * 175.00006 * 3 2 1 7 7 C 1.53006 * 109.46746 * 184.99953 * 6 3 2 8 8 N 1.46900 * 109.46867 * 180.98179 * 7 6 3 9 9 C 1.46900 * 110.99690 * 175.89092 * 8 7 6 10 10 C 1.53002 * 109.46886 * 182.67657 * 9 8 7 11 11 C 1.50700 * 115.54824 * 64.79371 * 10 9 8 12 12 H 1.08000 * 120.00389 * 266.99644 * 11 10 9 13 13 C 1.37879 * 120.00147 * 86.99938 * 11 10 9 14 14 N 1.31511 * 120.00366 * 180.32389 * 13 11 10 15 15 Si 1.86801 * 119.99696 * 0.32210 * 13 11 10 16 16 H 1.48507 * 109.46975 * 84.93824 * 15 13 11 17 17 H 1.48507 * 109.47131 * 204.93167 * 15 13 11 18 18 H 1.48497 * 109.47427 * 324.93634 * 15 13 11 19 19 C 1.52995 * 117.50198 * 279.12299 * 10 9 8 20 20 C 1.52998 * 117.49778 * 210.45984 * 10 9 8 21 21 H 1.08999 * 109.47296 * 299.99949 * 1 2 3 22 22 H 1.09006 * 109.46995 * 59.99610 * 1 2 3 23 23 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47296 * 240.00051 * 2 1 3 25 25 H 1.08998 * 109.47408 * 119.99902 * 2 1 3 26 26 H 0.96692 * 114.00647 * 300.00255 * 5 3 2 27 27 H 1.08999 * 109.47064 * 65.00022 * 6 3 2 28 28 H 1.08998 * 109.47057 * 304.99884 * 6 3 2 29 29 H 1.09004 * 109.46687 * 60.98631 * 7 6 3 30 30 H 1.08993 * 109.46970 * 300.98428 * 7 6 3 31 31 H 1.00896 * 111.00284 * 299.84575 * 8 7 6 32 32 H 1.08997 * 109.47164 * 302.67872 * 9 8 7 33 33 H 1.09000 * 109.47205 * 62.68227 * 9 8 7 34 34 H 0.96999 * 120.00104 * 180.02562 * 14 13 11 35 35 H 1.09004 * 117.49675 * 0.02562 * 19 10 9 36 36 H 1.08995 * 117.50323 * 145.02373 * 19 10 9 37 37 H 1.09002 * 117.50159 * 214.98277 * 20 10 9 38 38 H 1.09000 * 117.49974 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 7 5.5303 2.8882 0.3482 9 6 6.0533 4.2607 0.3721 10 6 7.5824 4.2233 0.4062 11 6 8.2456 3.6393 -0.8146 12 1 8.4978 2.5895 -0.8421 13 6 8.5306 4.4453 -1.8964 14 7 9.1035 3.9345 -2.9642 15 14 8.1027 6.2629 -1.8452 16 1 9.1987 7.0109 -1.1783 17 1 7.9290 6.7698 -3.2303 18 1 6.8405 6.4532 -1.0865 19 6 8.2532 3.9790 1.7594 20 6 8.3014 5.3693 1.1207 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0141 1.6543 -2.0139 27 1 4.0029 0.9836 -0.7596 28 1 3.8570 0.8800 1.0113 29 1 3.6401 3.3401 1.1461 30 1 3.7572 3.4538 -0.6264 31 1 5.8403 2.3690 1.1559 32 1 5.7226 4.7911 -0.5209 33 1 5.6827 4.7754 1.2586 34 1 9.3043 4.5016 -3.7251 35 1 7.6050 3.8446 2.6254 36 1 9.1743 3.3964 1.7668 37 1 9.2543 5.7007 0.7080 38 1 7.6850 6.1502 1.5661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218812062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:20 Heat of formation + Delta-G solvation = -66.303105 kcal Electronic energy + Delta-G solvation = -15938.857469 eV Core-core repulsion = 13394.413144 eV Total energy + Delta-G solvation = -2544.444325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41681 -38.82193 -36.09085 -34.13830 -33.71005 -31.54299 -28.12442 -26.90131 -24.82123 -23.31276 -22.37552 -22.22087 -20.72781 -18.31824 -17.35649 -17.14298 -16.74017 -16.13477 -15.99631 -15.49750 -14.86794 -14.78306 -14.58216 -14.32816 -13.88637 -13.38293 -13.28692 -13.01023 -12.80532 -12.59644 -12.32085 -12.11234 -11.91615 -11.88103 -11.79825 -11.57526 -11.48198 -10.89498 -10.74627 -10.52543 -10.23196 -9.09037 -8.20753 -6.23335 1.36723 1.39251 1.50367 2.41871 3.03161 3.14650 3.41599 3.62613 3.93429 4.06546 4.19046 4.19800 4.31474 4.35985 4.43547 4.51368 4.56183 4.65757 4.73245 4.79268 4.85821 4.87319 4.97086 5.10150 5.12805 5.14760 5.22368 5.40022 5.42502 5.44982 5.54454 5.78284 6.29683 6.43446 6.71060 6.83167 6.86794 7.42989 8.95955 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.005728 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.297352 B = 4886.842326 C = 5196.749599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.095 0.905 5 O -0.579 6.579 6 C -0.139 4.139 7 C 0.066 3.934 8 N -0.687 5.687 9 C 0.109 3.891 10 C -0.022 4.022 11 C -0.456 4.456 12 H 0.029 0.971 13 C 0.014 3.986 14 N -0.957 5.957 15 Si 0.940 3.060 16 H -0.267 1.267 17 H -0.303 1.303 18 H -0.242 1.242 19 C -0.161 4.161 20 C -0.201 4.201 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.384 0.616 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.341 0.659 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.118 -3.844 9.362 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.052 3.948 4 H 0.113 0.887 5 O -0.387 6.387 6 C -0.177 4.177 7 C -0.063 4.063 8 N -0.318 5.318 9 C -0.021 4.021 10 C -0.023 4.023 11 C -0.494 4.494 12 H 0.048 0.952 13 C -0.181 4.181 14 N -0.598 5.598 15 Si 0.766 3.234 16 H -0.193 1.193 17 H -0.230 1.230 18 H -0.166 1.166 19 C -0.199 4.199 20 C -0.239 4.239 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.233 0.767 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.279 -3.484 8.930 18.036 hybrid contribution 0.467 0.577 -0.102 0.749 sum -14.812 -2.907 8.827 17.486 Atomic orbital electron populations 1.21692 0.94971 1.01838 1.01941 1.22194 0.97089 0.96217 1.03405 1.21949 0.92146 0.93420 0.87270 0.88671 1.86512 1.77125 1.58378 1.16641 1.22207 0.96133 0.95999 1.03353 1.21872 0.87045 0.97672 0.99747 1.60100 1.09044 1.14672 1.47995 1.21461 0.93485 0.89120 0.98009 1.19364 0.91297 0.99436 0.92185 1.20302 1.35992 0.94832 0.98241 0.95227 1.25761 0.94698 1.02970 0.94720 1.70049 1.45461 1.37752 1.06523 0.85901 0.80596 0.80643 0.76270 1.19259 1.23030 1.16593 1.22822 1.02592 0.98033 0.96405 1.23043 1.02356 0.92326 1.06194 0.92701 0.93016 0.91938 0.91374 0.90155 0.76681 0.91842 0.90090 0.95235 0.92740 0.84126 0.93791 0.95509 0.92976 0.87831 0.90514 0.90931 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.81 71.98 0.71 -1.55 16 2 C -0.15 -2.46 5.61 30.60 0.17 -2.29 16 3 C 0.11 2.26 2.97 30.60 0.09 2.36 16 4 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 5 O -0.58 -13.60 12.39 -148.98 -1.85 -15.45 16 6 C -0.14 -3.32 5.19 30.60 0.16 -3.16 16 7 C 0.07 1.98 5.59 86.31 0.48 2.46 16 8 N -0.69 -25.31 6.36 -513.88 -3.27 -28.58 16 9 C 0.11 4.39 5.21 86.30 0.45 4.84 16 10 C -0.02 -0.98 1.01 -52.93 -0.05 -1.03 16 11 C -0.46 -26.17 9.33 25.60 0.24 -25.93 16 12 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 13 C 0.01 0.84 5.47 84.66 0.46 1.30 16 14 N -0.96 -61.33 13.96 21.45 0.30 -61.03 16 15 Si 0.94 45.82 24.78 68.60 1.70 47.52 16 16 H -0.27 -12.40 7.01 99.48 0.70 -11.70 16 17 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 18 H -0.24 -10.88 5.95 99.48 0.59 -10.29 16 19 C -0.16 -6.13 9.96 30.62 0.30 -5.83 16 20 C -0.20 -8.12 7.60 30.62 0.23 -7.88 16 21 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.05 0.88 7.82 -2.38 -0.02 0.87 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.38 7.18 9.04 -74.06 -0.67 6.51 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 1.85 7.78 -2.39 -0.02 1.83 16 31 H 0.34 11.37 8.81 -89.70 -0.79 10.58 16 32 H 0.04 1.97 6.72 -2.39 -0.02 1.95 16 33 H 0.03 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.07 3.16 7.09 -2.39 -0.02 3.14 16 38 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -67.82 306.59 -0.43 -68.25 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.56 Total: 26.01 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 3.25 Total: -36.72 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -2.97 Total: -89.61 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.85 Total: -15.45 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.70 Total: 47.52 kcal Total: -67.82 -0.43 -68.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218812062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.946 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds