Wall clock time and date at job start Mon Mar 30 2020 03:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 H 1.08999 * 109.47129 * 54.99810 * 3 2 1 5 5 C 1.50703 * 109.47105 * 175.00347 * 3 2 1 6 6 H 1.07994 * 120.00397 * 120.00006 * 5 3 2 7 7 C 1.37881 * 119.99605 * 299.99267 * 5 3 2 8 8 N 1.31517 * 119.99856 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46792 * 60.00481 * 9 7 5 11 11 H 1.48499 * 109.47251 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47303 * 300.00804 * 9 7 5 13 13 N 1.46905 * 109.46998 * 294.99977 * 3 2 1 14 14 C 1.48536 * 110.99958 * 292.39761 * 13 3 2 15 15 C 1.54940 * 103.22567 * 200.27967 * 14 13 3 16 16 C 1.54593 * 102.92045 * 37.41447 * 15 14 13 17 17 H 1.09001 * 110.39265 * 97.00446 * 16 15 14 18 18 C 1.52997 * 110.30832 * 219.12535 * 16 15 14 19 19 C 1.53006 * 109.47127 * 290.71989 * 18 16 15 20 20 O 1.42895 * 109.47036 * 180.02562 * 19 18 16 21 21 C 1.47904 * 110.99877 * 175.00159 * 13 3 2 22 22 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46980 * 299.99923 * 1 2 3 24 24 H 1.08995 * 109.47461 * 60.00122 * 1 2 3 25 25 H 1.08998 * 109.46930 * 239.99684 * 2 1 3 26 26 H 1.09003 * 109.47138 * 119.99770 * 2 1 3 27 27 H 0.96996 * 119.99499 * 180.02562 * 8 7 5 28 28 H 1.09001 * 110.66598 * 318.71239 * 14 13 3 29 29 H 1.08996 * 110.66839 * 81.67431 * 14 13 3 30 30 H 1.08995 * 110.72039 * 279.05713 * 15 14 13 31 31 H 1.08995 * 110.72010 * 155.76806 * 15 14 13 32 32 H 1.09001 * 109.47502 * 170.72146 * 18 16 15 33 33 H 1.09001 * 109.47289 * 50.71942 * 18 16 15 34 34 H 1.09001 * 109.47002 * 299.99574 * 19 18 16 35 35 H 1.08993 * 109.46955 * 60.00011 * 19 18 16 36 36 H 0.96700 * 113.99916 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.92019 * 26.49201 * 21 13 3 38 38 H 1.08996 * 110.07954 * 265.28393 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8801 1.3811 10 1 6.5004 2.2800 1.3807 11 1 6.3978 0.2158 2.6498 12 1 6.5966 0.1453 0.2343 13 7 1.6513 2.0993 -1.2553 14 6 2.3698 1.5050 -2.4116 15 6 2.2639 2.6048 -3.4979 16 6 2.4098 3.9105 -2.6832 17 1 3.4395 4.2666 -2.7175 18 6 1.4602 4.9819 -3.2228 19 6 1.9346 5.4344 -4.6053 20 8 1.0480 6.4355 -5.1090 21 6 2.0232 3.5307 -1.2418 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8292 -0.0609 2.9499 28 1 3.4126 1.3129 -2.1590 29 1 1.8795 0.5884 -2.7394 30 1 1.2938 2.5655 -3.9931 31 1 3.0725 2.5100 -4.2226 32 1 1.4518 5.8351 -2.5444 33 1 0.4541 4.5699 -3.3008 34 1 2.9406 5.8466 -4.5274 35 1 1.9429 4.5813 -5.2837 36 1 1.2885 6.7696 -5.9841 37 1 2.8720 3.6876 -0.5761 38 1 1.1772 4.1341 -0.9130 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229176728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:45 Heat of formation + Delta-G solvation = -63.444538 kcal Electronic energy + Delta-G solvation = -16636.037673 eV Core-core repulsion = 14091.717305 eV Total energy + Delta-G solvation = -2544.320368 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.71499 -36.88897 -34.61984 -32.08636 -31.03964 -28.95299 -27.32267 -25.84247 -23.06157 -22.25816 -21.03031 -19.50282 -18.97530 -17.27150 -16.34862 -15.55562 -15.14153 -14.54624 -14.21767 -13.73287 -13.13619 -12.90259 -12.77970 -12.33777 -12.19765 -11.73003 -11.41817 -11.22634 -11.03756 -10.88030 -10.60682 -10.59290 -10.33643 -10.19029 -10.09579 -9.93108 -9.89520 -9.59641 -9.39580 -9.04037 -8.35162 -7.13548 -5.98555 -4.11602 3.26702 3.32416 3.34333 4.22367 4.38763 5.03380 5.12726 5.22189 5.26490 5.31584 5.44413 5.61471 5.69877 5.97555 6.06919 6.10274 6.31110 6.36553 6.39657 6.47369 6.51437 6.65266 6.72992 6.76382 6.87001 6.94196 7.11873 7.21401 7.37037 7.57666 7.61608 7.76402 8.00052 8.16957 8.28694 8.46493 8.98968 9.54984 11.00798 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.007465 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.705697 B = 3749.737031 C = 4371.786195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.204 3.796 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.515 5.515 14 C 0.038 3.962 15 C -0.121 4.121 16 C -0.095 4.095 17 H 0.067 0.933 18 C -0.106 4.106 19 C 0.075 3.925 20 O -0.578 6.578 21 C 0.046 3.954 22 H 0.024 0.976 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.091 0.909 27 H 0.262 0.738 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.374 0.626 37 H 0.057 0.943 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 5.815 -10.700 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.097 3.903 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.159 4.159 16 C -0.114 4.114 17 H 0.085 0.915 18 C -0.144 4.144 19 C -0.003 4.003 20 O -0.383 6.383 21 C -0.083 4.083 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.220 0.780 37 H 0.075 0.925 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.553 5.528 -9.955 11.669 hybrid contribution 2.349 0.112 -0.225 2.362 sum -0.204 5.639 -10.180 11.639 Atomic orbital electron populations 1.21712 0.98902 0.98366 1.00585 1.21538 0.92213 0.99107 1.01819 1.19395 0.93040 0.91386 0.86484 0.94513 1.21693 0.92832 1.38230 1.05438 0.92409 1.24915 0.97742 0.95070 0.95693 1.69870 1.34852 1.38150 1.09389 0.86754 0.86272 0.78181 0.77368 1.20401 1.21223 1.20359 1.65095 1.52826 1.01011 1.04938 1.23116 0.99067 0.96212 0.90618 1.22612 1.00677 0.95108 0.97517 1.21943 0.98298 0.94678 0.96453 0.91475 1.21587 1.00151 0.98465 0.94201 1.22296 0.92009 0.89873 0.96081 1.86492 1.54930 1.58748 1.38097 1.22719 0.99675 0.91734 0.94179 0.95649 0.94266 0.93356 0.95101 0.89073 0.92843 0.92049 0.91835 0.91684 0.92522 0.91614 0.90982 0.94028 0.93622 0.77968 0.92462 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.16 0.36 -2.52 16 2 C -0.11 -2.60 5.22 -26.73 -0.14 -2.74 16 3 C 0.20 5.04 1.72 -68.86 -0.12 4.92 16 4 H 0.04 1.02 8.13 -51.93 -0.42 0.60 16 5 C -0.54 -14.33 6.43 -34.44 -0.22 -14.55 16 6 H 0.06 1.52 5.99 -52.49 -0.31 1.21 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.18 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.51 -10.96 4.72 -223.87 -1.06 -12.02 16 14 C 0.04 0.74 5.47 -1.89 -0.01 0.73 16 15 C -0.12 -1.90 5.87 -24.87 -0.15 -2.05 16 16 C -0.09 -1.50 3.00 -89.27 -0.27 -1.76 16 17 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 18 C -0.11 -1.50 4.74 -26.73 -0.13 -1.63 16 19 C 0.07 0.89 6.92 37.16 0.26 1.15 16 20 O -0.58 -6.89 13.66 -35.23 -0.48 -7.37 16 21 C 0.05 0.88 6.04 -2.75 -0.02 0.87 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 25 H 0.03 0.72 6.94 -51.93 -0.36 0.36 16 26 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.06 1.33 5.70 -51.93 -0.30 1.03 16 29 H 0.06 1.22 7.59 -51.93 -0.39 0.83 16 30 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.08 7.99 -51.93 -0.42 0.67 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.51 7.58 -51.93 -0.39 0.11 16 36 H 0.37 2.58 9.12 45.56 0.42 2.99 16 37 H 0.06 1.24 6.67 -51.93 -0.35 0.89 16 38 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -28.57 293.04 -7.75 -36.32 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.71 Total: 2.74 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.52 Total: -15.82 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.43 Total: -36.20 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.48 Total: -7.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.57 -7.75 -36.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229176728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.128 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds