Wall clock time and date at job start Mon Mar 30 2020 03:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 H 1.08999 * 109.47129 * 54.99810 * 3 2 1 5 5 C 1.50703 * 109.47105 * 175.00347 * 3 2 1 6 6 H 1.07994 * 120.00397 * 120.00006 * 5 3 2 7 7 C 1.37881 * 119.99605 * 299.99267 * 5 3 2 8 8 N 1.31517 * 119.99856 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46792 * 60.00481 * 9 7 5 11 11 H 1.48499 * 109.47251 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47303 * 300.00804 * 9 7 5 13 13 N 1.46905 * 109.46998 * 294.99977 * 3 2 1 14 14 C 1.48536 * 110.99958 * 292.39761 * 13 3 2 15 15 C 1.54940 * 103.22567 * 200.27967 * 14 13 3 16 16 C 1.54593 * 102.92045 * 37.41447 * 15 14 13 17 17 H 1.09001 * 110.39265 * 97.00446 * 16 15 14 18 18 C 1.52997 * 110.30832 * 219.12535 * 16 15 14 19 19 C 1.53006 * 109.47127 * 290.71989 * 18 16 15 20 20 O 1.42895 * 109.47036 * 180.02562 * 19 18 16 21 21 C 1.47904 * 110.99877 * 175.00159 * 13 3 2 22 22 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46980 * 299.99923 * 1 2 3 24 24 H 1.08995 * 109.47461 * 60.00122 * 1 2 3 25 25 H 1.08998 * 109.46930 * 239.99684 * 2 1 3 26 26 H 1.09003 * 109.47138 * 119.99770 * 2 1 3 27 27 H 0.96996 * 119.99499 * 180.02562 * 8 7 5 28 28 H 1.09001 * 110.66598 * 318.71239 * 14 13 3 29 29 H 1.08996 * 110.66839 * 81.67431 * 14 13 3 30 30 H 1.08995 * 110.72039 * 279.05713 * 15 14 13 31 31 H 1.08995 * 110.72010 * 155.76806 * 15 14 13 32 32 H 1.09001 * 109.47502 * 170.72146 * 18 16 15 33 33 H 1.09001 * 109.47289 * 50.71942 * 18 16 15 34 34 H 1.09001 * 109.47002 * 299.99574 * 19 18 16 35 35 H 1.08993 * 109.46955 * 60.00011 * 19 18 16 36 36 H 0.96700 * 113.99916 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.92019 * 26.49201 * 21 13 3 38 38 H 1.08996 * 110.07954 * 265.28393 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8801 1.3811 10 1 6.5004 2.2800 1.3807 11 1 6.3978 0.2158 2.6498 12 1 6.5966 0.1453 0.2343 13 7 1.6513 2.0993 -1.2553 14 6 2.3698 1.5050 -2.4116 15 6 2.2639 2.6048 -3.4979 16 6 2.4098 3.9105 -2.6832 17 1 3.4395 4.2666 -2.7175 18 6 1.4602 4.9819 -3.2228 19 6 1.9346 5.4344 -4.6053 20 8 1.0480 6.4355 -5.1090 21 6 2.0232 3.5307 -1.2418 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8292 -0.0609 2.9499 28 1 3.4126 1.3129 -2.1590 29 1 1.8795 0.5884 -2.7394 30 1 1.2938 2.5655 -3.9931 31 1 3.0725 2.5100 -4.2226 32 1 1.4518 5.8351 -2.5444 33 1 0.4541 4.5699 -3.3008 34 1 2.9406 5.8466 -4.5274 35 1 1.9429 4.5813 -5.2837 36 1 1.2885 6.7696 -5.9841 37 1 2.8720 3.6876 -0.5761 38 1 1.1772 4.1341 -0.9130 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229176728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:45 Heat of formation + Delta-G solvation = -83.576364 kcal Electronic energy + Delta-G solvation = -16636.910654 eV Core-core repulsion = 14091.717305 eV Total energy + Delta-G solvation = -2545.193350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24147 -37.92697 -36.24128 -33.91416 -32.65896 -30.46763 -28.84213 -27.59744 -24.87175 -23.43948 -22.67120 -20.84739 -20.81922 -18.35731 -18.15035 -17.18535 -16.44584 -15.99359 -15.91117 -15.01613 -14.78609 -14.46396 -14.30873 -13.94499 -13.88642 -13.24983 -12.97336 -12.87881 -12.72198 -12.42065 -12.29484 -12.21592 -11.83502 -11.68103 -11.64343 -11.55281 -11.34396 -11.21218 -10.94386 -10.78948 -10.42529 -8.95065 -8.02950 -6.24738 1.38137 1.38573 1.45959 2.39944 3.15302 3.33568 3.58498 3.84645 3.93317 4.20133 4.39294 4.41285 4.58364 4.61773 4.66848 4.72528 4.77258 4.87530 4.90823 5.01000 5.05278 5.13409 5.19296 5.23961 5.31069 5.36673 5.42762 5.45369 5.57261 5.63331 5.78802 6.06120 6.19099 6.39918 6.56936 6.95842 6.97083 7.45094 8.92742 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.007465 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.705697 B = 3749.737031 C = 4371.786195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.210 3.790 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.517 5.517 14 C 0.035 3.965 15 C -0.107 4.107 16 C -0.084 4.084 17 H 0.075 0.925 18 C -0.101 4.101 19 C 0.080 3.920 20 O -0.597 6.597 21 C 0.043 3.957 22 H 0.046 0.954 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.027 0.973 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 6.364 -12.835 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.103 3.897 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.241 5.241 14 C -0.093 4.093 15 C -0.145 4.145 16 C -0.103 4.103 17 H 0.093 0.907 18 C -0.139 4.139 19 C 0.002 3.998 20 O -0.405 6.405 21 C -0.086 4.086 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.246 0.754 37 H 0.046 0.954 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.163 6.092 -12.122 13.738 hybrid contribution 2.187 -0.026 0.434 2.229 sum 0.024 6.066 -11.688 13.169 Atomic orbital electron populations 1.21574 0.96432 0.99802 1.00559 1.21389 0.94399 0.98157 1.00255 1.19155 0.92050 0.91620 0.86922 0.98489 1.21939 0.93855 1.37659 1.05311 0.92623 1.25645 1.01872 0.94987 0.95541 1.70007 1.36393 1.38964 1.09805 0.85788 0.81335 0.78193 0.77391 1.20046 1.21019 1.19695 1.65018 1.53055 1.01921 1.04064 1.23142 0.97296 0.97757 0.91097 1.22566 1.02468 0.92861 0.96634 1.21831 0.99142 0.95535 0.93809 0.90708 1.21471 0.99091 0.97530 0.95830 1.22184 0.92308 0.90579 0.94712 1.86427 1.55313 1.58809 1.39970 1.22751 0.98571 0.90790 0.96487 0.93464 0.95041 0.92519 0.95095 0.92017 0.92982 0.94397 0.91626 0.90420 0.89839 0.92169 0.91934 0.92776 0.92291 0.75374 0.95414 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.80 71.98 0.71 -4.51 16 2 C -0.10 -5.04 5.22 30.59 0.16 -4.88 16 3 C 0.21 10.69 1.72 44.17 0.08 10.77 16 4 H 0.00 -0.16 8.13 -2.39 -0.02 -0.18 16 5 C -0.55 -29.58 6.43 25.60 0.16 -29.42 16 6 H 0.06 2.97 5.99 -2.91 -0.02 2.95 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -52.53 11.29 21.45 0.24 -52.29 16 9 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.52 -22.08 4.72 -862.21 -4.07 -26.15 16 14 C 0.04 1.33 5.47 86.65 0.47 1.80 16 15 C -0.11 -3.07 5.87 31.80 0.19 -2.89 16 16 C -0.08 -2.50 3.00 -9.92 -0.03 -2.53 16 17 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 18 C -0.10 -2.64 4.74 30.60 0.15 -2.49 16 19 C 0.08 1.63 6.92 71.98 0.50 2.12 16 20 O -0.60 -12.42 13.66 -148.98 -2.03 -14.46 16 21 C 0.04 1.66 6.04 86.45 0.52 2.18 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 25 H 0.03 1.46 6.94 -2.39 -0.02 1.44 16 26 H 0.06 3.38 5.95 -2.39 -0.01 3.37 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.04 1.62 5.70 -2.39 -0.01 1.61 16 29 H 0.07 2.43 7.59 -2.39 -0.02 2.42 16 30 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.75 7.99 -2.39 -0.02 1.73 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.06 7.58 -2.39 -0.02 1.04 16 36 H 0.40 4.15 9.12 -74.06 -0.68 3.48 16 37 H 0.03 1.23 6.67 -2.39 -0.02 1.21 16 38 H 0.06 2.33 7.68 -2.39 -0.02 2.32 16 Total: -1.00 -62.01 293.04 -0.13 -62.15 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.35 Total: 13.69 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 3.35 Total: -28.34 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -3.83 Total: -78.44 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -2.03 Total: -14.46 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -62.01 -0.13 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229176728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.431 kcal (2) G-P(sol) polarization free energy of solvation -62.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds