Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47589 * 2 1 4 4 H 1.09001 * 109.50019 * 305.07715 * 3 2 1 5 5 C 1.53035 * 109.53753 * 65.17679 * 3 2 1 6 6 N 1.46840 * 109.52871 * 179.14258 * 5 3 2 7 7 C 1.46894 * 111.00553 * 174.16037 * 6 5 3 8 8 C 1.52997 * 109.47515 * 190.25549 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 C 1.46848 * 111.19645 * 298.25642 * 6 5 3 18 18 C 1.53042 * 109.52370 * 61.74073 * 17 6 5 19 19 C 1.53117 * 109.50458 * 184.99963 * 3 2 1 20 20 H 1.09006 * 109.52298 * 302.27012 * 19 3 2 21 21 O 1.42899 * 109.57796 * 62.43079 * 19 3 2 22 22 H 1.09009 * 109.46901 * 59.99670 * 1 2 3 23 23 H 1.08994 * 109.47599 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46958 * 300.00303 * 1 2 3 25 25 H 1.09007 * 109.47247 * 239.99606 * 2 1 3 26 26 H 1.09007 * 109.47421 * 120.00321 * 2 1 3 27 27 H 1.09008 * 109.45939 * 59.12289 * 5 3 2 28 28 H 1.09002 * 109.45818 * 299.16085 * 5 3 2 29 29 H 1.09002 * 109.47104 * 70.25281 * 7 6 5 30 30 H 1.08998 * 109.46828 * 310.26113 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 33 33 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46464 * 181.75290 * 17 6 5 35 35 H 1.08996 * 109.46400 * 301.72661 * 17 6 5 36 36 H 1.09003 * 109.50046 * 60.75926 * 18 17 6 37 37 H 1.08998 * 109.50507 * 180.84084 * 18 17 6 38 38 H 0.96702 * 114.00591 * 179.72011 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6398 2.1268 1.3090 6 7 2.1472 3.5048 1.3175 7 6 1.6649 4.2361 2.4967 8 6 1.9953 5.7223 2.3454 9 6 1.5000 6.4727 3.5549 10 1 1.0000 5.9425 4.3519 11 6 1.6861 7.8359 3.6443 12 7 2.2954 8.4814 2.6740 13 14 1.0728 8.7658 5.1438 14 1 2.1411 8.8027 6.1745 15 1 0.7136 10.1529 4.7534 16 1 -0.1239 8.0813 5.6955 17 6 3.6136 3.5311 1.2454 18 6 4.0729 2.8887 -0.0655 19 6 3.5660 1.4450 -0.1258 20 1 4.0001 0.8721 0.6937 21 8 3.9448 0.8577 -1.3722 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0641 1.5783 2.1500 28 1 0.5533 2.1393 1.3948 29 1 2.1509 3.8450 3.3906 30 1 0.5858 4.1109 2.5856 31 1 1.5094 6.1134 1.4515 32 1 3.0744 5.8474 2.2566 33 1 2.4260 9.4406 2.7368 34 1 3.9607 4.5636 1.2849 35 1 4.0286 2.9761 2.0867 36 1 3.6694 3.4514 -0.9074 37 1 5.1618 2.8949 -0.1120 38 1 4.9000 0.8306 -1.5202 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229840225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -73.830849 kcal Electronic energy + Delta-G solvation = -16329.203489 eV Core-core repulsion = 13784.432736 eV Total energy + Delta-G solvation = -2544.770753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39086 -36.38642 -34.61050 -33.09830 -31.52880 -29.42488 -28.40217 -24.86612 -23.99455 -22.65855 -21.33925 -19.74262 -19.63906 -17.24912 -16.50328 -15.37947 -15.04457 -14.58596 -14.46004 -14.03085 -13.63418 -13.56350 -13.11138 -12.66297 -12.53256 -12.04744 -11.88324 -11.83985 -11.21715 -11.18893 -10.98706 -10.88024 -10.74850 -10.58312 -10.38195 -10.04155 -9.89592 -9.68311 -9.28564 -9.10855 -8.32543 -7.71328 -5.99293 -4.01689 3.32091 3.38418 3.41747 4.21202 4.35772 4.52259 4.76896 4.91705 5.07048 5.26529 5.33636 5.36885 5.46249 5.54602 5.56829 5.71376 5.81993 5.88137 5.95462 6.01501 6.09247 6.16019 6.22394 6.33292 6.39567 6.41400 6.50402 6.58665 6.97280 7.51488 7.58832 7.65113 7.80812 7.90445 8.09021 8.43940 9.05585 9.61939 11.12117 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042256 B = 0.005495 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.473732 B = 5094.372599 C = 5574.067476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.076 4.076 4 H 0.085 0.915 5 C 0.061 3.939 6 N -0.540 5.540 7 C 0.064 3.936 8 C 0.028 3.972 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.057 3.943 18 C -0.148 4.148 19 C 0.109 3.891 20 H 0.048 0.952 21 O -0.567 6.567 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 -15.279 -5.154 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.094 4.094 4 H 0.103 0.897 5 C -0.068 4.068 6 N -0.264 5.264 7 C -0.063 4.063 8 C -0.010 4.010 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.071 4.071 18 C -0.186 4.186 19 C 0.050 3.950 20 H 0.065 0.935 21 O -0.372 6.372 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.350 -14.918 -5.671 16.017 hybrid contribution 0.682 0.326 1.671 1.834 sum 2.031 -14.591 -4.000 15.266 Atomic orbital electron populations 1.21819 0.95907 1.01168 1.02172 1.21481 0.95766 0.96031 1.01944 1.21192 0.93052 0.96008 0.99189 0.89699 1.22133 1.00442 0.89184 0.94999 1.62009 1.08699 1.12550 1.43131 1.22319 0.98779 0.97295 0.87892 1.19104 0.96941 0.87602 0.97319 1.21198 1.37772 0.92682 1.04457 0.92813 1.24989 0.95302 0.97741 0.96249 1.69972 1.42517 1.08619 1.32144 0.86598 0.79148 0.79201 0.83064 1.20729 1.21189 1.19888 1.22040 0.88427 1.01804 0.94877 1.22325 0.99943 0.96415 0.99908 1.21903 0.95595 0.92312 0.85171 0.93452 1.86495 1.27947 1.83548 1.39255 0.92615 0.93130 0.92458 0.91249 0.92620 0.95633 0.90306 0.96277 0.92036 0.95672 0.96525 0.93000 0.89188 0.95693 0.90235 0.91804 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 37.15 0.36 -1.28 16 2 C -0.11 -1.33 5.34 -26.74 -0.14 -1.48 16 3 C -0.08 -1.03 2.08 -90.54 -0.19 -1.22 16 4 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 5 C 0.06 0.93 4.48 -3.84 -0.02 0.91 16 6 N -0.54 -9.98 4.65 -234.68 -1.09 -11.07 16 7 C 0.06 1.36 4.90 -3.83 -0.02 1.34 16 8 C 0.03 0.72 4.91 -27.88 -0.14 0.59 16 9 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 13 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.06 0.96 5.29 -3.83 -0.02 0.94 16 18 C -0.15 -2.06 5.72 -26.65 -0.15 -2.21 16 19 C 0.11 1.40 2.94 -26.61 -0.08 1.32 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 21 O -0.57 -6.78 12.68 -35.23 -0.45 -7.23 16 22 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.62 6.59 -51.93 -0.34 0.28 16 25 H 0.07 0.83 7.62 -51.92 -0.40 0.43 16 26 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.08 1.18 6.49 -51.93 -0.34 0.84 16 29 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.06 1.30 7.98 -51.93 -0.41 0.88 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.45 6.44 -51.93 -0.33 0.12 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 1.72 6.22 -51.93 -0.32 1.40 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.37 2.89 9.08 45.56 0.41 3.31 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -30.72 297.41 -8.07 -38.79 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.92 Total: -0.74 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.81 Total: -14.67 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.36 Total: -37.31 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.45 Total: -7.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.72 -8.07 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229840225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.043 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds