Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47589 * 2 1 4 4 H 1.09001 * 109.50019 * 305.07715 * 3 2 1 5 5 C 1.53035 * 109.53753 * 65.17679 * 3 2 1 6 6 N 1.46840 * 109.52871 * 179.14258 * 5 3 2 7 7 C 1.46894 * 111.00553 * 174.16037 * 6 5 3 8 8 C 1.52997 * 109.47515 * 190.25549 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 C 1.46848 * 111.19645 * 298.25642 * 6 5 3 18 18 C 1.53042 * 109.52370 * 61.74073 * 17 6 5 19 19 C 1.53117 * 109.50458 * 184.99963 * 3 2 1 20 20 H 1.09006 * 109.52298 * 302.27012 * 19 3 2 21 21 O 1.42899 * 109.57796 * 62.43079 * 19 3 2 22 22 H 1.09009 * 109.46901 * 59.99670 * 1 2 3 23 23 H 1.08994 * 109.47599 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46958 * 300.00303 * 1 2 3 25 25 H 1.09007 * 109.47247 * 239.99606 * 2 1 3 26 26 H 1.09007 * 109.47421 * 120.00321 * 2 1 3 27 27 H 1.09008 * 109.45939 * 59.12289 * 5 3 2 28 28 H 1.09002 * 109.45818 * 299.16085 * 5 3 2 29 29 H 1.09002 * 109.47104 * 70.25281 * 7 6 5 30 30 H 1.08998 * 109.46828 * 310.26113 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 33 33 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46464 * 181.75290 * 17 6 5 35 35 H 1.08996 * 109.46400 * 301.72661 * 17 6 5 36 36 H 1.09003 * 109.50046 * 60.75926 * 18 17 6 37 37 H 1.08998 * 109.50507 * 180.84084 * 18 17 6 38 38 H 0.96702 * 114.00591 * 179.72011 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6398 2.1268 1.3090 6 7 2.1472 3.5048 1.3175 7 6 1.6649 4.2361 2.4967 8 6 1.9953 5.7223 2.3454 9 6 1.5000 6.4727 3.5549 10 1 1.0000 5.9425 4.3519 11 6 1.6861 7.8359 3.6443 12 7 2.2954 8.4814 2.6740 13 14 1.0728 8.7658 5.1438 14 1 2.1411 8.8027 6.1745 15 1 0.7136 10.1529 4.7534 16 1 -0.1239 8.0813 5.6955 17 6 3.6136 3.5311 1.2454 18 6 4.0729 2.8887 -0.0655 19 6 3.5660 1.4450 -0.1258 20 1 4.0001 0.8721 0.6937 21 8 3.9448 0.8577 -1.3722 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0641 1.5783 2.1500 28 1 0.5533 2.1393 1.3948 29 1 2.1509 3.8450 3.3906 30 1 0.5858 4.1109 2.5856 31 1 1.5094 6.1134 1.4515 32 1 3.0744 5.8474 2.2566 33 1 2.4260 9.4406 2.7368 34 1 3.9607 4.5636 1.2849 35 1 4.0286 2.9761 2.0867 36 1 3.6694 3.4514 -0.9074 37 1 5.1618 2.8949 -0.1120 38 1 4.9000 0.8306 -1.5202 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229840225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -95.759911 kcal Electronic energy + Delta-G solvation = -16330.154404 eV Core-core repulsion = 13784.432736 eV Total energy + Delta-G solvation = -2545.721668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59708 -37.63587 -35.81735 -34.98068 -33.01753 -31.00510 -29.69651 -26.69063 -25.13181 -24.21696 -22.63079 -21.30549 -20.79092 -18.61725 -18.23005 -16.71907 -16.59299 -16.25647 -15.81801 -15.27653 -14.89359 -14.72985 -14.50050 -14.24566 -13.80412 -13.60983 -13.28111 -13.04815 -12.83513 -12.71011 -12.44550 -12.34871 -12.21665 -11.81250 -11.79302 -11.56775 -11.36710 -11.13992 -11.04552 -10.70067 -10.51382 -9.18848 -8.20336 -6.31861 1.40174 1.41836 1.53024 2.40103 3.00824 3.13135 3.30806 3.69256 3.79542 4.02649 4.15590 4.27099 4.37355 4.42917 4.45132 4.51834 4.58009 4.66940 4.72616 4.83924 4.95869 4.98432 5.04320 5.07907 5.11957 5.22470 5.25849 5.43394 5.44757 5.51384 5.66040 5.78430 6.10143 6.31387 6.33659 6.85336 6.91877 7.37386 8.91921 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042256 B = 0.005495 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.473732 B = 5094.372599 C = 5574.067476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.074 4.074 4 H 0.065 0.935 5 C 0.063 3.937 6 N -0.555 5.555 7 C 0.080 3.920 8 C 0.036 3.964 9 C -0.545 4.545 10 H 0.060 0.940 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.056 3.944 18 C -0.140 4.140 19 C 0.116 3.884 20 H 0.062 0.938 21 O -0.574 6.574 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.063 0.937 31 H -0.010 1.010 32 H -0.005 1.005 33 H 0.264 0.736 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -16.825 -4.343 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.093 4.093 4 H 0.083 0.917 5 C -0.064 4.064 6 N -0.280 5.280 7 C -0.047 4.047 8 C -0.001 4.001 9 C -0.584 4.584 10 H 0.079 0.921 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.072 4.072 18 C -0.178 4.178 19 C 0.058 3.942 20 H 0.080 0.920 21 O -0.382 6.382 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.008 0.992 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.310 -16.491 -4.871 17.245 hybrid contribution 0.737 0.798 1.348 1.731 sum 2.047 -15.693 -3.523 16.213 Atomic orbital electron populations 1.21819 0.95350 1.02131 1.01744 1.21418 0.96231 0.94348 1.02439 1.21154 0.93943 0.96944 0.97276 0.91697 1.22181 1.00568 0.87273 0.96419 1.61920 1.09789 1.14680 1.41576 1.21951 0.98950 0.94556 0.89264 1.18927 0.95019 0.90897 0.95277 1.21631 1.37984 0.93507 1.05238 0.92137 1.25966 0.95260 0.98829 0.99570 1.70113 1.43632 1.09082 1.34402 0.85421 0.78991 0.77562 0.78902 1.19690 1.20744 1.18684 1.22016 0.87595 1.00436 0.97114 1.22277 1.01476 0.96908 0.97155 1.21751 0.94910 0.91440 0.86144 0.91988 1.86460 1.30049 1.83118 1.38618 0.93168 0.91484 0.92795 0.91181 0.91558 0.94575 0.90119 0.96024 0.91810 0.99168 0.98672 0.92754 0.92386 0.94728 0.92070 0.89215 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.67 71.98 0.70 -2.29 16 2 C -0.11 -2.23 5.34 30.59 0.16 -2.07 16 3 C -0.07 -1.92 2.08 -10.74 -0.02 -1.94 16 4 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 5 C 0.06 1.86 4.48 86.33 0.39 2.24 16 6 N -0.55 -20.67 4.65 -896.38 -4.17 -24.84 16 7 C 0.08 3.47 4.90 86.30 0.42 3.90 16 8 C 0.04 1.97 4.91 29.85 0.15 2.12 16 9 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 13 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 C 0.06 1.93 5.29 86.33 0.46 2.39 16 18 C -0.14 -3.77 5.72 30.65 0.18 -3.59 16 19 C 0.12 2.75 2.94 30.67 0.09 2.84 16 20 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 21 O -0.57 -12.26 12.68 -148.98 -1.89 -14.15 16 22 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.08 6.59 -2.39 -0.02 1.07 16 25 H 0.07 1.49 7.62 -2.38 -0.02 1.47 16 26 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.08 2.33 6.49 -2.39 -0.02 2.31 16 29 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.06 2.70 7.98 -2.39 -0.02 2.68 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.00 -0.29 6.44 -2.39 -0.02 -0.31 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.06 2.33 6.22 -2.39 -0.01 2.32 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.39 4.91 9.08 -74.06 -0.67 4.24 16 Total: -1.00 -66.59 297.41 -0.20 -66.79 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.34 Total: 10.07 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.21 Total: -27.14 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.89 Total: -82.12 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.89 Total: -14.15 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.59 -0.20 -66.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229840225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.974 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds