Wall clock time and date at job start Mon Mar 30 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 H 1.08996 * 109.47276 * 179.85738 * 3 2 1 5 5 C 1.50694 * 109.47291 * 299.86152 * 3 2 1 6 6 H 1.08003 * 120.00216 * 114.95170 * 5 3 2 7 7 C 1.37880 * 120.00025 * 294.96191 * 5 3 2 8 8 N 1.31516 * 119.99771 * 355.04870 * 7 5 3 9 9 Si 1.86795 * 120.00083 * 175.05351 * 7 5 3 10 10 H 1.48497 * 109.47065 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47007 * 299.99285 * 9 7 5 12 12 H 1.48496 * 109.47305 * 59.99587 * 9 7 5 13 13 N 1.46905 * 109.47235 * 59.86300 * 3 2 1 14 14 C 1.46900 * 111.00176 * 89.26023 * 13 3 2 15 15 C 1.53000 * 109.47034 * 185.03036 * 14 13 3 16 16 O 1.42903 * 112.84603 * 52.82457 * 15 14 13 17 17 C 1.42894 * 114.00073 * 65.03483 * 16 15 14 18 18 C 1.53775 * 113.61757 * 281.51740 * 15 14 13 19 19 C 1.53785 * 87.08222 * 220.01837 * 18 15 14 20 20 C 1.53782 * 87.08052 * 25.43312 * 19 18 15 21 21 H 1.09001 * 109.47114 * 65.03589 * 1 2 3 22 22 H 1.08999 * 109.46637 * 185.03746 * 1 2 3 23 23 H 1.08996 * 109.47452 * 305.03084 * 1 2 3 24 24 H 1.08996 * 109.47651 * 240.00149 * 2 1 3 25 25 H 1.09007 * 109.47101 * 119.99618 * 2 1 3 26 26 H 0.96996 * 120.00023 * 354.33568 * 8 7 5 27 27 H 1.00901 * 111.00147 * 213.22299 * 13 3 2 28 28 H 1.08997 * 109.47302 * 305.03190 * 14 13 3 29 29 H 1.09000 * 109.46816 * 65.03322 * 14 13 3 30 30 H 1.09006 * 109.47415 * 184.96013 * 17 16 15 31 31 H 1.08999 * 109.46986 * 304.95241 * 17 16 15 32 32 H 1.08999 * 109.47773 * 64.95625 * 17 16 15 33 33 H 1.09003 * 113.61577 * 334.56543 * 18 15 14 34 34 H 1.08994 * 113.61701 * 105.47130 * 18 15 14 35 35 H 1.08995 * 113.61662 * 270.88533 * 19 18 15 36 36 H 1.09001 * 113.61211 * 139.97673 * 19 18 15 37 37 H 1.08995 * 113.61736 * 220.02221 * 20 19 18 38 38 H 1.08996 * 113.61918 * 89.11241 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0026 5 6 1.5405 2.1519 -1.2321 6 1 0.8538 2.9802 -1.1374 7 6 1.9599 1.7435 -2.4805 8 7 2.8693 0.8001 -2.5925 9 14 1.2364 2.5302 -4.0125 10 1 1.8500 1.9198 -5.2192 11 1 -0.2317 2.3079 -4.0369 12 1 1.5162 3.9885 -3.9993 13 7 1.5476 2.1360 1.1978 14 6 2.4809 1.9745 2.3207 15 6 1.8775 2.6008 3.5795 16 8 0.5626 2.1186 3.8634 17 6 0.5109 0.7279 4.1878 18 6 1.9964 4.1333 3.6228 19 6 2.3157 3.9877 5.1200 20 6 2.8200 2.5719 4.7944 21 1 -0.3633 0.4337 -0.9317 22 1 -0.3632 -1.0237 0.0902 23 1 -0.3634 0.5899 0.8414 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 3.3046 0.4495 -1.7998 27 1 1.3776 3.1120 1.0064 28 1 2.6614 0.9136 2.4934 29 1 3.4228 2.4695 2.0843 30 1 -0.5283 0.4201 4.3036 31 1 0.9736 0.1507 3.3872 32 1 1.0480 0.5519 5.1198 33 1 2.8273 4.5236 3.0351 34 1 1.0572 4.6499 3.4249 35 1 1.4322 4.0005 5.7582 36 1 3.0994 4.6613 5.4668 37 1 2.5456 1.8279 5.5421 38 1 3.8760 2.5352 4.5269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233869183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:49 Heat of formation + Delta-G solvation = -33.235302 kcal Electronic energy + Delta-G solvation = -16871.606035 eV Core-core repulsion = 14328.595637 eV Total energy + Delta-G solvation = -2543.010398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76308 -36.21402 -35.27584 -32.56621 -30.69132 -27.36677 -26.77107 -25.42203 -24.57258 -23.37506 -21.82538 -19.25175 -19.17626 -17.09646 -16.04580 -15.48454 -14.96409 -14.45456 -14.04539 -14.01713 -13.71342 -13.39557 -12.98017 -12.48275 -12.11376 -11.97204 -11.82421 -11.37362 -11.15955 -11.06983 -10.79341 -10.77821 -10.64183 -10.11458 -10.08257 -10.00549 -9.79583 -9.65792 -9.00499 -8.44371 -8.32175 -7.27280 -6.32850 -4.04794 3.44313 3.46629 3.64727 3.93656 4.51687 4.60168 4.72986 4.92072 5.05545 5.37551 5.42793 5.51897 5.65204 5.71085 5.77548 5.81323 5.89660 5.95017 5.99362 6.15996 6.21782 6.32082 6.34713 6.42357 6.51091 6.66770 7.01195 7.09563 7.32015 7.51979 7.58848 7.61869 7.93094 8.14629 8.55647 8.64186 8.89436 9.65899 11.03193 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.007214 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.939763 B = 3880.662976 C = 4203.491683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.203 3.797 4 H -0.010 1.010 5 C -0.592 4.592 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.667 5.667 14 C 0.048 3.952 15 C 0.101 3.899 16 O -0.348 6.348 17 C 0.036 3.964 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.168 4.168 21 H 0.054 0.946 22 H 0.014 0.986 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.014 0.986 26 H 0.270 0.730 27 H 0.335 0.665 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 2.712 13.005 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.095 3.905 4 H 0.008 0.992 5 C -0.631 4.631 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.298 5.298 14 C -0.083 4.083 15 C 0.060 3.940 16 O -0.266 6.266 17 C -0.061 4.061 18 C -0.163 4.163 19 C -0.171 4.171 20 C -0.206 4.206 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.536 2.223 11.521 11.833 hybrid contribution 1.011 0.316 1.428 1.778 sum -0.525 2.538 12.949 13.206 Atomic orbital electron populations 1.21418 0.96500 0.97458 1.02284 1.21468 0.96315 0.98329 0.98118 1.19233 0.92262 0.91536 0.87477 0.99234 1.22010 1.30483 1.18619 0.91982 0.92873 1.25694 0.95672 0.95614 1.01167 1.70782 1.24379 1.26077 1.33606 0.83621 0.75910 0.75452 0.75779 1.20898 1.21370 1.21600 1.60438 1.45147 1.17967 1.06239 1.22304 0.94008 0.99931 0.92052 1.22513 0.83760 0.94885 0.92825 1.87863 1.25605 1.23872 1.89281 1.22613 1.01895 0.83117 0.98426 1.22962 1.02510 0.94480 0.96352 1.22745 1.00919 0.96567 0.96882 1.23544 1.00099 0.98014 0.98971 0.92682 0.96642 0.92626 0.92255 0.96690 0.91877 0.84774 0.92021 0.95514 0.90244 0.93225 0.95189 0.89186 0.90441 0.90059 0.91704 0.91281 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.48 37.16 0.35 -2.34 16 2 C -0.10 -2.49 5.53 -26.73 -0.15 -2.64 16 3 C 0.20 5.06 1.94 -68.86 -0.13 4.92 16 4 H -0.01 -0.27 7.20 -51.93 -0.37 -0.64 16 5 C -0.59 -16.21 7.33 -34.44 -0.25 -16.46 16 6 H 0.05 1.46 7.61 -52.48 -0.40 1.06 16 7 C 0.02 0.64 5.27 -17.82 -0.09 0.55 16 8 N -0.91 -27.08 12.84 55.43 0.71 -26.36 16 9 Si 1.06 25.08 29.91 -169.99 -5.08 20.00 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.67 -14.23 5.27 -107.95 -0.57 -14.80 16 14 C 0.05 0.86 4.44 -3.82 -0.02 0.85 16 15 C 0.10 1.55 0.88 -89.81 -0.08 1.47 16 16 O -0.35 -5.80 10.38 -35.23 -0.37 -6.17 16 17 C 0.04 0.52 10.63 101.05 1.07 1.59 16 18 C -0.13 -1.73 7.39 -25.92 -0.19 -1.92 16 19 C -0.13 -1.57 8.02 -25.92 -0.21 -1.78 16 20 C -0.17 -2.12 7.21 -25.92 -0.19 -2.30 16 21 H 0.05 1.34 7.41 -51.93 -0.38 0.95 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.05 1.23 7.45 -51.93 -0.39 0.85 16 24 H 0.06 1.56 6.21 -51.93 -0.32 1.24 16 25 H 0.01 0.33 7.69 -51.92 -0.40 -0.07 16 26 H 0.27 8.01 6.05 -40.82 -0.25 7.77 16 27 H 0.33 7.26 8.13 -39.29 -0.32 6.95 16 28 H 0.06 1.15 6.72 -51.93 -0.35 0.80 16 29 H 0.03 0.49 8.03 -51.93 -0.42 0.07 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.78 6.79 -51.93 -0.35 0.43 16 32 H 0.03 0.37 6.88 -51.93 -0.36 0.01 16 33 H 0.09 1.19 8.02 -51.93 -0.42 0.78 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.83 6.83 -51.93 -0.35 0.47 16 38 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 297.67 15.07 4.49 4.49 Total: -1.00 -29.24 297.67 -7.11 -36.35 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.41 Total: 4.55 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 0.12 Total: -18.06 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.14 Total: -41.16 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.37 Total: -6.17 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.24 -7.11 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233869183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.117 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds