Wall clock time and date at job start Mon Mar 30 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 H 1.09003 * 109.98890 * 53.91422 * 3 2 1 5 5 O 1.43742 * 109.87821 * 292.83573 * 3 2 1 6 6 C 1.44381 * 106.97430 * 214.06134 * 5 3 2 7 7 C 1.55000 * 103.49192 * 40.05986 * 6 5 3 8 8 C 1.54093 * 109.87994 * 175.00210 * 3 2 1 9 9 H 1.09001 * 110.60200 * 240.18563 * 8 3 2 10 10 C 1.52995 * 110.48990 * 2.77835 * 8 3 2 11 11 N 1.46903 * 109.47626 * 181.22255 * 10 8 3 12 12 C 1.46896 * 110.99991 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46899 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47207 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99603 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00380 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 239.99776 * 18 16 14 21 21 H 1.48500 * 109.47454 * 119.99769 * 18 16 14 22 22 H 1.09005 * 109.46611 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46969 * 299.99405 * 1 2 3 24 24 H 1.09000 * 109.47270 * 60.00018 * 1 2 3 25 25 H 1.09004 * 109.47156 * 240.00412 * 2 1 3 26 26 H 1.09000 * 109.47270 * 119.99982 * 2 1 3 27 27 H 1.08999 * 110.62186 * 281.55656 * 6 5 3 28 28 H 1.08999 * 110.62269 * 158.56079 * 6 5 3 29 29 H 1.08998 * 110.90332 * 204.77992 * 7 6 5 30 30 H 1.08994 * 110.90358 * 81.17491 * 7 6 5 31 31 H 1.09007 * 109.47218 * 61.22125 * 10 8 3 32 32 H 1.09002 * 109.46997 * 301.22326 * 10 8 3 33 33 H 1.00897 * 110.99771 * 56.04114 * 11 10 8 34 34 H 1.08993 * 109.47625 * 59.99741 * 12 11 10 35 35 H 1.09006 * 109.47099 * 299.99221 * 12 11 10 36 36 H 1.09005 * 109.47493 * 59.99662 * 13 12 11 37 37 H 1.08998 * 109.47006 * 299.99626 * 13 12 11 38 38 H 0.97001 * 119.99667 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9949 0.8278 5 8 1.7083 2.0782 -1.2458 6 6 2.7840 2.9910 -1.5528 7 6 4.0545 2.2042 -1.1413 8 6 3.5757 1.4553 0.1262 9 1 3.8823 1.9913 1.0245 10 6 4.1236 0.0270 0.1433 11 7 5.5845 0.0645 0.2936 12 6 6.1467 -1.2925 0.3134 13 6 7.6666 -1.2125 0.4702 14 6 8.2434 -2.6046 0.4912 15 1 7.5911 -3.4607 0.4021 16 6 9.6036 -2.7853 0.6253 17 7 10.3979 -1.7427 0.7343 18 14 10.3186 -4.5108 0.6506 19 1 9.2224 -5.5030 0.5117 20 1 11.0277 -4.7340 1.9362 21 1 11.2741 -4.6673 -0.4753 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.6915 3.9047 -0.9657 28 1 2.8020 3.2186 -2.6186 29 1 4.8735 2.8837 -0.9057 30 1 4.3463 1.5012 -1.9215 31 1 3.8672 -0.4718 -0.7914 32 1 3.6864 -0.5199 0.9787 33 1 5.8498 0.5784 1.1203 34 1 5.9043 -1.7999 -0.6202 35 1 5.7236 -1.8488 1.1499 36 1 7.9094 -0.7049 1.4038 37 1 8.0893 -0.6563 -0.3664 38 1 10.0266 -0.8467 0.7208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233975074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:25 Heat of formation + Delta-G solvation = -73.337317 kcal Electronic energy + Delta-G solvation = -15921.178122 eV Core-core repulsion = 13376.428770 eV Total energy + Delta-G solvation = -2544.749351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.94578 -36.20574 -34.00816 -33.32796 -31.99059 -29.27401 -28.07264 -24.80167 -23.59619 -22.97837 -21.76344 -20.90574 -19.46376 -16.76815 -16.58332 -15.87275 -15.62229 -15.23570 -14.27351 -13.97829 -13.71807 -13.59835 -13.39054 -13.04596 -12.66709 -12.25555 -11.74265 -11.68137 -11.63053 -11.37185 -11.07753 -10.91756 -10.76654 -10.68141 -10.45770 -10.13554 -10.10802 -9.79948 -9.64023 -8.57475 -8.31606 -7.90876 -6.35866 -4.04684 3.44125 3.48427 3.61605 3.80695 4.33790 4.55265 4.58191 4.69503 4.95605 5.03932 5.06593 5.20584 5.26129 5.42252 5.43727 5.44441 5.59043 5.61862 5.76308 5.80029 5.83895 5.94356 6.08917 6.10191 6.19742 6.21362 6.25968 6.29738 6.81600 6.86900 7.24696 7.49109 7.66847 7.84081 8.24970 8.47774 8.89652 9.67980 11.05477 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045458 B = 0.004519 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.810560 B = 6194.556552 C = 6634.853710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.083 3.917 4 H 0.065 0.935 5 O -0.375 6.375 6 C 0.042 3.958 7 C -0.135 4.135 8 C -0.117 4.117 9 H 0.079 0.921 10 C 0.067 3.933 11 N -0.693 5.693 12 C 0.074 3.926 13 C 0.012 3.988 14 C -0.603 4.603 15 H 0.048 0.952 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 1.075 2.925 19 H -0.290 1.290 20 H -0.287 1.287 21 H -0.286 1.286 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.333 0.667 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.004 0.996 37 H 0.016 0.984 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.162 7.368 -1.276 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.083 0.917 5 O -0.294 6.294 6 C -0.034 4.034 7 C -0.173 4.173 8 C -0.137 4.137 9 H 0.097 0.903 10 C -0.063 4.063 11 N -0.323 5.323 12 C -0.055 4.055 13 C -0.025 4.025 14 C -0.642 4.642 15 H 0.067 0.933 16 C -0.189 4.189 17 N -0.550 5.550 18 Si 0.903 3.097 19 H -0.216 1.216 20 H -0.214 1.214 21 H -0.213 1.213 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.022 0.978 37 H 0.034 0.966 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.828 6.551 -1.958 17.241 hybrid contribution -1.490 0.646 0.948 1.881 sum -17.318 7.197 -1.009 18.781 Atomic orbital electron populations 1.21739 0.95628 1.01374 1.01935 1.21842 0.96315 0.95196 1.03110 1.22762 0.93724 0.94004 0.87065 0.91715 1.88858 1.43738 1.57250 1.39570 1.23597 0.86211 0.92588 1.01034 1.23047 0.97426 0.99284 0.97499 1.22575 0.94195 0.97483 0.99399 0.90251 1.22112 0.88986 0.94442 1.00739 1.60579 1.08272 1.18193 1.45294 1.21993 0.97841 0.86561 0.99070 1.19203 0.89551 0.97614 0.96170 1.22055 0.94819 0.92152 1.55171 0.93338 1.25843 0.93876 1.05396 0.93752 1.70712 1.38255 0.99525 1.46529 0.83468 0.75267 0.73987 0.76941 1.21569 1.21365 1.21286 0.92878 0.93105 0.92198 0.90826 0.90474 0.92603 0.89216 0.90174 0.89934 0.90890 0.95319 0.84959 0.92229 0.96545 0.97791 0.96560 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.83 37.16 0.37 -1.10 16 2 C -0.13 -1.39 4.47 -26.73 -0.12 -1.51 16 3 C 0.08 0.94 3.41 -26.16 -0.09 0.86 16 4 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 5 O -0.37 -4.75 10.84 -35.23 -0.38 -5.13 16 6 C 0.04 0.45 7.72 38.21 0.29 0.74 16 7 C -0.13 -1.61 6.52 -24.72 -0.16 -1.77 16 8 C -0.12 -1.41 3.23 -89.10 -0.29 -1.70 16 9 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.07 0.95 3.81 -3.82 -0.01 0.93 16 11 N -0.69 -12.12 6.31 -113.78 -0.72 -12.83 16 12 C 0.07 1.57 5.62 -3.82 -0.02 1.55 16 13 C 0.01 0.31 4.54 -27.88 -0.13 0.19 16 14 C -0.60 -17.50 9.11 -34.44 -0.31 -17.82 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 17 N -0.91 -28.40 13.65 55.43 0.76 -27.64 16 18 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 25 H 0.07 0.87 7.05 -51.93 -0.37 0.50 16 26 H 0.08 0.81 6.48 -51.93 -0.34 0.47 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.11 7.83 -51.93 -0.41 0.70 16 31 H 0.07 1.09 6.99 -51.93 -0.36 0.72 16 32 H 0.03 0.40 6.51 -51.93 -0.34 0.06 16 33 H 0.33 5.60 8.73 -39.29 -0.34 5.26 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 37 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 38 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -30.97 301.50 -8.15 -39.12 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.70 Total: 0.62 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -0.57 Total: -19.28 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.04 Total: -40.48 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.97 -8.15 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233975074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.213 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds