Wall clock time and date at job start Mon Mar 30 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 H 1.09003 * 109.98890 * 53.91422 * 3 2 1 5 5 O 1.43742 * 109.87821 * 292.83573 * 3 2 1 6 6 C 1.44381 * 106.97430 * 214.06134 * 5 3 2 7 7 C 1.55000 * 103.49192 * 40.05986 * 6 5 3 8 8 C 1.54093 * 109.87994 * 175.00210 * 3 2 1 9 9 H 1.09001 * 110.60200 * 240.18563 * 8 3 2 10 10 C 1.52995 * 110.48990 * 2.77835 * 8 3 2 11 11 N 1.46903 * 109.47626 * 181.22255 * 10 8 3 12 12 C 1.46896 * 110.99991 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46899 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47207 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99603 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00380 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 239.99776 * 18 16 14 21 21 H 1.48500 * 109.47454 * 119.99769 * 18 16 14 22 22 H 1.09005 * 109.46611 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46969 * 299.99405 * 1 2 3 24 24 H 1.09000 * 109.47270 * 60.00018 * 1 2 3 25 25 H 1.09004 * 109.47156 * 240.00412 * 2 1 3 26 26 H 1.09000 * 109.47270 * 119.99982 * 2 1 3 27 27 H 1.08999 * 110.62186 * 281.55656 * 6 5 3 28 28 H 1.08999 * 110.62269 * 158.56079 * 6 5 3 29 29 H 1.08998 * 110.90332 * 204.77992 * 7 6 5 30 30 H 1.08994 * 110.90358 * 81.17491 * 7 6 5 31 31 H 1.09007 * 109.47218 * 61.22125 * 10 8 3 32 32 H 1.09002 * 109.46997 * 301.22326 * 10 8 3 33 33 H 1.00897 * 110.99771 * 56.04114 * 11 10 8 34 34 H 1.08993 * 109.47625 * 59.99741 * 12 11 10 35 35 H 1.09006 * 109.47099 * 299.99221 * 12 11 10 36 36 H 1.09005 * 109.47493 * 59.99662 * 13 12 11 37 37 H 1.08998 * 109.47006 * 299.99626 * 13 12 11 38 38 H 0.97001 * 119.99667 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9949 0.8278 5 8 1.7083 2.0782 -1.2458 6 6 2.7840 2.9910 -1.5528 7 6 4.0545 2.2042 -1.1413 8 6 3.5757 1.4553 0.1262 9 1 3.8823 1.9913 1.0245 10 6 4.1236 0.0270 0.1433 11 7 5.5845 0.0645 0.2936 12 6 6.1467 -1.2925 0.3134 13 6 7.6666 -1.2125 0.4702 14 6 8.2434 -2.6046 0.4912 15 1 7.5911 -3.4607 0.4021 16 6 9.6036 -2.7853 0.6253 17 7 10.3979 -1.7427 0.7343 18 14 10.3186 -4.5108 0.6506 19 1 9.2224 -5.5030 0.5117 20 1 11.0277 -4.7340 1.9362 21 1 11.2741 -4.6673 -0.4753 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.6915 3.9047 -0.9657 28 1 2.8020 3.2186 -2.6186 29 1 4.8735 2.8837 -0.9057 30 1 4.3463 1.5012 -1.9215 31 1 3.8672 -0.4718 -0.7914 32 1 3.6864 -0.5199 0.9787 33 1 5.8498 0.5784 1.1203 34 1 5.9043 -1.7999 -0.6202 35 1 5.7236 -1.8488 1.1499 36 1 7.9094 -0.7049 1.4038 37 1 8.0893 -0.6563 -0.3664 38 1 10.0266 -0.8467 0.7208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233975074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:25 Heat of formation + Delta-G solvation = -93.867585 kcal Electronic energy + Delta-G solvation = -15922.068381 eV Core-core repulsion = 13376.428770 eV Total energy + Delta-G solvation = -2545.639611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89416 -37.69554 -35.63572 -34.57609 -33.33545 -30.82115 -29.24099 -26.46134 -24.67935 -24.47658 -22.82384 -22.59687 -20.50667 -18.89460 -17.61381 -16.85806 -16.72621 -16.42224 -15.78907 -15.67745 -15.15289 -14.95779 -14.42114 -14.22324 -14.12243 -13.72447 -13.27594 -12.97065 -12.83522 -12.53927 -12.47475 -12.29662 -11.95325 -11.87459 -11.80859 -11.64597 -11.54924 -11.40395 -10.75174 -10.56711 -10.55742 -9.36051 -8.71352 -6.41776 1.52224 1.62082 1.78532 2.55072 2.92636 3.14510 3.15727 3.62676 3.69001 3.94586 4.09399 4.19923 4.28912 4.34145 4.36347 4.43835 4.51227 4.55025 4.61018 4.74525 4.84075 4.86596 4.93305 4.94901 5.09719 5.12411 5.23031 5.24053 5.26004 5.40499 5.41046 5.88717 5.98722 6.11482 6.17300 6.41451 6.58203 7.40828 8.70179 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045458 B = 0.004519 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.810560 B = 6194.556552 C = 6634.853710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.084 3.916 4 H 0.080 0.920 5 O -0.392 6.392 6 C 0.044 3.956 7 C -0.136 4.136 8 C -0.113 4.113 9 H 0.090 0.910 10 C 0.071 3.929 11 N -0.695 5.695 12 C 0.091 3.909 13 C 0.016 3.984 14 C -0.622 4.622 15 H 0.050 0.950 16 C -0.038 4.038 17 N -0.937 5.937 18 Si 1.124 2.876 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.339 0.661 34 H 0.054 0.946 35 H 0.019 0.981 36 H -0.010 1.010 37 H -0.009 1.009 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.270 7.030 -0.869 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.026 3.974 4 H 0.097 0.903 5 O -0.312 6.312 6 C -0.032 4.032 7 C -0.174 4.174 8 C -0.132 4.132 9 H 0.109 0.891 10 C -0.058 4.058 11 N -0.326 5.326 12 C -0.038 4.038 13 C -0.022 4.022 14 C -0.660 4.660 15 H 0.068 0.932 16 C -0.235 4.235 17 N -0.574 5.574 18 Si 0.945 3.055 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.204 1.204 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.156 0.844 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.968 6.238 -1.552 18.145 hybrid contribution -1.181 0.810 0.806 1.644 sum -18.149 7.049 -0.746 19.484 Atomic orbital electron populations 1.21704 0.94686 1.01935 1.01987 1.21849 0.97196 0.94896 1.02656 1.22814 0.92955 0.94407 0.87181 0.90257 1.88845 1.44426 1.57794 1.40123 1.23695 0.84796 0.92594 1.02096 1.23019 0.98319 0.99152 0.96903 1.22549 0.94855 0.95905 0.99933 0.89133 1.22134 0.86700 0.96268 1.00677 1.60464 1.10553 1.15881 1.45708 1.21612 0.94675 0.88691 0.98803 1.19099 0.92860 0.95932 0.94279 1.22485 0.95373 0.93401 1.54732 0.93160 1.27471 0.94839 1.08657 0.92565 1.70854 1.38613 0.99478 1.48497 0.82849 0.75420 0.69584 0.77617 1.19447 1.20244 1.20354 0.92121 0.92073 0.93072 0.92189 0.89972 0.90862 0.88190 0.89867 0.91926 0.91700 0.94285 0.84355 0.92762 0.96302 0.99204 0.99045 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.83 71.98 0.71 -1.89 16 2 C -0.13 -2.61 4.47 30.60 0.14 -2.47 16 3 C 0.08 1.76 3.41 30.96 0.11 1.87 16 4 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 5 O -0.39 -9.27 10.84 -148.98 -1.61 -10.89 16 6 C 0.04 0.86 7.72 72.67 0.56 1.43 16 7 C -0.14 -3.10 6.52 31.90 0.21 -2.89 16 8 C -0.11 -2.55 3.23 -9.81 -0.03 -2.58 16 9 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 10 C 0.07 1.94 3.81 86.30 0.33 2.27 16 11 N -0.70 -23.96 6.31 -513.88 -3.24 -27.20 16 12 C 0.09 3.88 5.62 86.30 0.49 4.37 16 13 C 0.02 0.84 4.54 29.85 0.14 0.98 16 14 C -0.62 -36.24 9.11 25.60 0.23 -36.00 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 16 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 17 N -0.94 -58.95 13.65 21.45 0.29 -58.66 16 18 Si 1.12 50.81 29.90 68.60 2.05 52.87 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.00 7.91 -2.39 -0.02 0.98 16 25 H 0.06 1.37 7.05 -2.38 -0.02 1.35 16 26 H 0.08 1.57 6.48 -2.39 -0.02 1.55 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.67 7.83 -2.39 -0.02 1.65 16 31 H 0.06 1.90 6.99 -2.38 -0.02 1.88 16 32 H 0.04 1.01 6.51 -2.39 -0.02 0.99 16 33 H 0.34 11.15 8.73 -89.70 -0.78 10.36 16 34 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 36 H -0.01 -0.57 8.01 -2.38 -0.02 -0.59 16 37 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 38 H 0.26 16.35 7.22 -92.71 -0.67 15.68 16 Total: -1.00 -65.83 301.50 1.15 -64.68 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.33 Total: 15.89 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 3.33 Total: -36.69 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.95 Total: -85.86 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.61 Total: -10.89 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.87 kcal Total: -65.83 1.15 -64.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233975074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.186 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds