Wall clock time and date at job start Mon Mar 30 2020 03:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 H 1.09008 * 109.47000 * 305.29061 * 3 2 1 5 5 C 1.50701 * 109.47026 * 185.29387 * 3 2 1 6 6 H 1.08004 * 119.99470 * 243.99920 * 5 3 2 7 7 C 1.37876 * 120.00273 * 64.00222 * 5 3 2 8 8 N 1.31519 * 119.99708 * 9.22520 * 7 5 3 9 9 Si 1.86796 * 119.99983 * 189.22961 * 7 5 3 10 10 H 1.48496 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47201 * 239.99516 * 9 7 5 12 12 H 1.48502 * 109.47028 * 119.99736 * 9 7 5 13 13 N 1.46900 * 109.47659 * 65.28894 * 3 2 1 14 14 C 1.46896 * 111.00315 * 215.30695 * 13 3 2 15 15 C 1.53003 * 110.45447 * 302.78247 * 14 13 3 16 16 C 1.54506 * 110.51185 * 65.39082 * 14 13 3 17 17 C 1.54481 * 104.06322 * 118.64644 * 16 14 13 18 18 O 1.44429 * 104.80312 * 23.97757 * 17 16 14 19 19 C 1.44424 * 105.27202 * 319.48644 * 18 17 16 20 20 H 1.08997 * 110.37631 * 281.68286 * 19 18 17 21 21 C 1.53011 * 110.36884 * 159.34556 * 19 18 17 22 22 H 1.09003 * 109.47158 * 64.41315 * 1 2 3 23 23 H 1.09004 * 109.47243 * 184.40955 * 1 2 3 24 24 H 1.09001 * 109.47277 * 304.40617 * 1 2 3 25 25 H 1.08994 * 109.46900 * 239.99620 * 2 1 3 26 26 H 1.08995 * 109.46850 * 119.99600 * 2 1 3 27 27 H 0.97003 * 120.00202 * 3.84255 * 8 7 5 28 28 H 1.00905 * 110.99725 * 91.34488 * 13 3 2 29 29 H 1.08998 * 109.46824 * 59.30064 * 15 14 13 30 30 H 1.09004 * 109.46960 * 179.30141 * 15 14 13 31 31 H 1.08996 * 109.47129 * 299.30215 * 15 14 13 32 32 H 1.09008 * 110.50888 * 237.28655 * 16 14 13 33 33 H 1.08998 * 110.51070 * 359.85978 * 16 14 13 34 34 H 1.09003 * 110.37148 * 142.80709 * 17 16 14 35 35 H 1.08995 * 110.37176 * 265.03110 * 17 16 14 36 36 H 1.08995 * 109.46645 * 304.61859 * 21 19 18 37 37 H 1.08996 * 109.46960 * 64.62172 * 21 19 18 38 38 H 1.08996 * 109.47028 * 184.62220 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6013 1.9830 -0.8389 5 6 3.5413 1.4446 -0.1311 6 1 4.1528 1.8293 0.6717 7 6 4.1340 0.9554 -1.2758 8 7 3.3958 0.6565 -2.3224 9 14 5.9856 0.7171 -1.3400 10 1 6.5825 1.1249 -0.0429 11 1 6.5544 1.5500 -2.4299 12 1 6.2920 -0.7128 -1.5986 13 7 1.6574 2.0973 1.2581 14 6 1.3401 3.5147 1.0387 15 6 2.5297 4.2366 0.4025 16 6 0.0829 3.6571 0.1520 17 6 -0.9278 4.4036 1.0507 18 8 -0.1144 5.1117 2.0115 19 6 0.9403 4.1919 2.3684 20 1 0.5728 3.4496 3.0768 21 6 2.1308 4.9501 2.9591 22 1 -0.3633 0.4438 -0.9269 23 1 -0.3634 -1.0246 0.0790 24 1 -0.3634 0.5807 0.8479 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.4419 0.8322 -2.3092 28 1 2.3797 1.9919 1.9548 29 1 2.7732 3.7658 -0.5499 30 1 2.2728 5.2827 0.2356 31 1 3.3903 4.1755 1.0685 32 1 0.3082 4.2440 -0.7386 33 1 -0.3018 2.6758 -0.1257 34 1 -1.5147 5.1064 0.4592 35 1 -1.5831 3.6939 1.5555 36 1 2.4596 5.7150 2.2556 37 1 1.8329 5.4216 3.8955 38 1 2.9481 4.2537 3.1468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234007659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:31 Heat of formation + Delta-G solvation = -61.514665 kcal Electronic energy + Delta-G solvation = -17366.529043 eV Core-core repulsion = 14822.292360 eV Total energy + Delta-G solvation = -2544.236683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71459 -36.35170 -33.47565 -31.69772 -31.06245 -29.51334 -26.97306 -25.95728 -23.95266 -22.96902 -21.82663 -19.69409 -18.55833 -17.10717 -16.21659 -15.28805 -15.09634 -14.23826 -13.80997 -13.71492 -13.44829 -13.12142 -12.47661 -12.39123 -12.14545 -11.98159 -11.89938 -11.43488 -11.20975 -10.80739 -10.76031 -10.73099 -10.42260 -10.40823 -10.19730 -10.10968 -9.77230 -9.66086 -9.30144 -8.84407 -8.31159 -7.36783 -6.36375 -4.11402 3.40254 3.42171 3.55301 4.20201 4.48393 4.93290 5.04303 5.24817 5.33406 5.36828 5.53216 5.67394 5.68105 5.80468 6.00246 6.05875 6.14322 6.21636 6.22804 6.31452 6.35711 6.40882 6.43813 6.49989 6.61980 6.84859 6.90816 7.07269 7.11756 7.18356 7.34365 7.56881 7.92712 8.03858 8.43531 8.57733 8.80498 9.58990 10.96705 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.009582 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.915260 B = 2921.426547 C = 3456.438542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.617 4.617 6 H 0.049 0.951 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 1.063 2.937 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.670 5.670 14 C 0.096 3.904 15 C -0.161 4.161 16 C -0.144 4.144 17 C 0.050 3.950 18 O -0.379 6.379 19 C 0.079 3.921 20 H 0.072 0.928 21 C -0.145 4.145 22 H 0.035 0.965 23 H 0.029 0.971 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.272 0.728 28 H 0.332 0.668 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 5.195 6.385 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.095 3.905 4 H 0.045 0.955 5 C -0.656 4.656 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.543 5.543 9 Si 0.892 3.108 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.301 5.301 14 C 0.003 3.997 15 C -0.219 4.219 16 C -0.182 4.182 17 C -0.027 4.027 18 O -0.298 6.298 19 C 0.021 3.979 20 H 0.090 0.910 21 C -0.202 4.202 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.339 4.657 5.469 8.392 hybrid contribution -0.237 0.626 0.653 0.935 sum -4.576 5.283 6.122 9.291 Atomic orbital electron populations 1.21765 0.98564 0.99097 1.00522 1.21556 0.92661 0.99682 1.00824 1.19242 0.94096 0.90351 0.86841 0.95548 1.22578 0.91969 1.46176 1.04855 0.93287 1.25634 1.06313 0.93647 0.92274 1.70734 1.08637 1.44851 1.30084 0.83640 0.75075 0.76871 0.75200 1.21665 1.21629 1.21293 1.60979 1.47296 1.09290 1.12492 1.22044 0.94415 0.90061 0.93150 1.22493 0.97679 0.98722 1.03048 1.23033 0.95338 1.01631 0.98244 1.23299 0.93750 0.95358 0.90279 1.89047 1.40916 1.38583 1.61296 1.23025 0.87983 0.90826 0.96086 0.91042 1.21872 0.96840 1.00923 1.00581 0.94555 0.95156 0.92593 0.91944 0.93915 0.91651 0.85100 0.90320 0.94196 0.92781 0.91419 0.89465 0.89950 0.92627 0.91594 0.92754 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.03 37.16 0.34 -2.39 16 2 C -0.11 -2.44 5.31 -26.73 -0.14 -2.58 16 3 C 0.20 4.66 0.68 -68.86 -0.05 4.62 16 4 H 0.03 0.67 5.51 -51.92 -0.29 0.38 16 5 C -0.62 -15.85 6.65 -34.44 -0.23 -16.08 16 6 H 0.05 1.28 7.57 -52.48 -0.40 0.88 16 7 C 0.03 0.72 5.15 -17.82 -0.09 0.63 16 8 N -0.91 -25.94 12.81 55.43 0.71 -25.23 16 9 Si 1.06 24.50 29.91 -169.99 -5.08 19.42 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -13.25 5.27 -92.67 -0.49 -13.74 16 14 C 0.10 1.72 0.82 -130.03 -0.11 1.61 16 15 C -0.16 -3.05 6.29 37.16 0.23 -2.82 16 16 C -0.14 -2.48 5.50 -25.16 -0.14 -2.61 16 17 C 0.05 0.75 7.63 37.93 0.29 1.04 16 18 O -0.38 -6.36 11.34 -35.23 -0.40 -6.76 16 19 C 0.08 1.28 3.52 -25.95 -0.09 1.19 16 20 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 21 C -0.14 -2.09 8.38 37.16 0.31 -1.78 16 22 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 1.04 7.44 -51.93 -0.39 0.65 16 25 H 0.06 1.57 6.33 -51.93 -0.33 1.24 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.27 7.76 6.29 -40.82 -0.26 7.50 16 28 H 0.33 6.65 8.18 -39.29 -0.32 6.33 16 29 H 0.08 1.76 6.11 -51.93 -0.32 1.44 16 30 H 0.04 0.70 7.64 -51.93 -0.40 0.30 16 31 H 0.05 1.01 6.84 -51.93 -0.36 0.65 16 32 H 0.07 1.16 7.73 -51.92 -0.40 0.76 16 33 H 0.09 1.57 6.21 -51.93 -0.32 1.25 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.97 6.66 -51.93 -0.35 0.62 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.98 7.75 -51.93 -0.40 0.57 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -27.20 286.75 -6.88 -34.08 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.27 Total: 7.08 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 0.32 Total: -19.17 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.22 Total: -38.96 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.40 Total: -6.76 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.20 -6.88 -34.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234007659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.435 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds