Wall clock time and date at job start Mon Mar 30 2020 03:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 H 1.09008 * 109.47000 * 305.29061 * 3 2 1 5 5 C 1.50701 * 109.47026 * 185.29387 * 3 2 1 6 6 H 1.08004 * 119.99470 * 243.99920 * 5 3 2 7 7 C 1.37876 * 120.00273 * 64.00222 * 5 3 2 8 8 N 1.31519 * 119.99708 * 9.22520 * 7 5 3 9 9 Si 1.86796 * 119.99983 * 189.22961 * 7 5 3 10 10 H 1.48496 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47201 * 239.99516 * 9 7 5 12 12 H 1.48502 * 109.47028 * 119.99736 * 9 7 5 13 13 N 1.46900 * 109.47659 * 65.28894 * 3 2 1 14 14 C 1.46896 * 111.00315 * 215.30695 * 13 3 2 15 15 C 1.53003 * 110.45447 * 302.78247 * 14 13 3 16 16 C 1.54506 * 110.51185 * 65.39082 * 14 13 3 17 17 C 1.54481 * 104.06322 * 118.64644 * 16 14 13 18 18 O 1.44429 * 104.80312 * 23.97757 * 17 16 14 19 19 C 1.44424 * 105.27202 * 319.48644 * 18 17 16 20 20 H 1.08997 * 110.37631 * 281.68286 * 19 18 17 21 21 C 1.53011 * 110.36884 * 159.34556 * 19 18 17 22 22 H 1.09003 * 109.47158 * 64.41315 * 1 2 3 23 23 H 1.09004 * 109.47243 * 184.40955 * 1 2 3 24 24 H 1.09001 * 109.47277 * 304.40617 * 1 2 3 25 25 H 1.08994 * 109.46900 * 239.99620 * 2 1 3 26 26 H 1.08995 * 109.46850 * 119.99600 * 2 1 3 27 27 H 0.97003 * 120.00202 * 3.84255 * 8 7 5 28 28 H 1.00905 * 110.99725 * 91.34488 * 13 3 2 29 29 H 1.08998 * 109.46824 * 59.30064 * 15 14 13 30 30 H 1.09004 * 109.46960 * 179.30141 * 15 14 13 31 31 H 1.08996 * 109.47129 * 299.30215 * 15 14 13 32 32 H 1.09008 * 110.50888 * 237.28655 * 16 14 13 33 33 H 1.08998 * 110.51070 * 359.85978 * 16 14 13 34 34 H 1.09003 * 110.37148 * 142.80709 * 17 16 14 35 35 H 1.08995 * 110.37176 * 265.03110 * 17 16 14 36 36 H 1.08995 * 109.46645 * 304.61859 * 21 19 18 37 37 H 1.08996 * 109.46960 * 64.62172 * 21 19 18 38 38 H 1.08996 * 109.47028 * 184.62220 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6013 1.9830 -0.8389 5 6 3.5413 1.4446 -0.1311 6 1 4.1528 1.8293 0.6717 7 6 4.1340 0.9554 -1.2758 8 7 3.3958 0.6565 -2.3224 9 14 5.9856 0.7171 -1.3400 10 1 6.5825 1.1249 -0.0429 11 1 6.5544 1.5500 -2.4299 12 1 6.2920 -0.7128 -1.5986 13 7 1.6574 2.0973 1.2581 14 6 1.3401 3.5147 1.0387 15 6 2.5297 4.2366 0.4025 16 6 0.0829 3.6571 0.1520 17 6 -0.9278 4.4036 1.0507 18 8 -0.1144 5.1117 2.0115 19 6 0.9403 4.1919 2.3684 20 1 0.5728 3.4496 3.0768 21 6 2.1308 4.9501 2.9591 22 1 -0.3633 0.4438 -0.9269 23 1 -0.3634 -1.0246 0.0790 24 1 -0.3634 0.5807 0.8479 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.4419 0.8322 -2.3092 28 1 2.3797 1.9919 1.9548 29 1 2.7732 3.7658 -0.5499 30 1 2.2728 5.2827 0.2356 31 1 3.3903 4.1755 1.0685 32 1 0.3082 4.2440 -0.7386 33 1 -0.3018 2.6758 -0.1257 34 1 -1.5147 5.1064 0.4592 35 1 -1.5831 3.6939 1.5555 36 1 2.4596 5.7150 2.2556 37 1 1.8329 5.4216 3.8955 38 1 2.9481 4.2537 3.1468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234007659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:31 Heat of formation + Delta-G solvation = -78.708431 kcal Electronic energy + Delta-G solvation = -17367.274620 eV Core-core repulsion = 14822.292360 eV Total energy + Delta-G solvation = -2544.982260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10711 -38.02500 -35.13833 -33.48576 -32.41774 -31.06773 -28.43764 -27.75271 -25.41901 -24.75797 -23.21492 -21.41017 -20.05622 -19.04866 -17.68390 -16.58557 -16.38780 -15.86958 -15.68856 -15.21328 -15.17334 -14.69082 -14.12583 -13.86703 -13.76839 -13.33745 -13.25879 -13.10969 -12.68767 -12.58517 -12.39286 -12.23292 -12.01045 -11.96885 -11.85767 -11.68659 -11.48159 -11.23719 -10.75698 -10.62943 -10.36487 -9.12569 -8.46306 -6.23959 1.51963 1.58325 1.73416 2.57055 2.93965 3.22698 3.45227 3.67630 3.92942 4.02819 4.25609 4.32988 4.43209 4.46619 4.55780 4.61858 4.67079 4.72886 4.75862 4.90799 4.93517 4.97473 5.01897 5.08522 5.13738 5.21843 5.28439 5.40966 5.48492 5.50198 5.73359 5.84195 6.00668 6.11532 6.58008 6.62675 6.84986 7.53352 8.83215 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.009582 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.915260 B = 2921.426547 C = 3456.438542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.003 0.997 5 C -0.613 4.613 6 H 0.044 0.956 7 C -0.022 4.022 8 N -0.934 5.934 9 Si 1.103 2.897 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.660 5.660 14 C 0.089 3.911 15 C -0.149 4.149 16 C -0.146 4.146 17 C 0.054 3.946 18 O -0.387 6.387 19 C 0.085 3.915 20 H 0.076 0.924 21 C -0.143 4.143 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 5.820 7.866 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.143 4.143 3 C 0.104 3.896 4 H 0.021 0.979 5 C -0.652 4.652 6 H 0.062 0.938 7 C -0.222 4.222 8 N -0.571 5.571 9 Si 0.928 3.072 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.289 5.289 14 C -0.003 4.003 15 C -0.208 4.208 16 C -0.185 4.185 17 C -0.022 4.022 18 O -0.307 6.307 19 C 0.027 3.973 20 H 0.094 0.906 21 C -0.200 4.200 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.781 5.294 6.970 9.973 hybrid contribution -0.133 0.469 0.208 0.530 sum -4.914 5.762 7.178 10.435 Atomic orbital electron populations 1.21624 0.95755 1.00498 1.00783 1.21432 0.95157 0.98712 0.99042 1.19000 0.92448 0.90721 0.87452 0.97873 1.22860 0.93540 1.44713 1.04123 0.93769 1.26784 1.09492 0.93596 0.92284 1.70837 1.08174 1.47020 1.31118 0.83095 0.71284 0.76892 0.75915 1.19925 1.21459 1.21008 1.60930 1.46701 1.10527 1.10779 1.22178 0.94362 0.88898 0.94838 1.22346 0.98274 0.99205 1.00952 1.23020 0.95661 1.01364 0.98415 1.23397 0.93098 0.95911 0.89813 1.89048 1.41101 1.38916 1.61590 1.22983 0.88608 0.91008 0.94720 0.90600 1.21863 0.96134 1.00748 1.01243 0.94771 0.93270 0.91666 0.95034 0.94251 0.92884 0.85128 0.94271 0.92898 0.92730 0.92150 0.90530 0.87651 0.91326 0.92015 0.90884 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.03 71.98 0.65 -4.17 16 2 C -0.10 -4.73 5.31 30.60 0.16 -4.57 16 3 C 0.21 9.87 0.68 44.17 0.03 9.90 16 4 H 0.00 0.18 5.51 -2.38 -0.01 0.16 16 5 C -0.61 -31.80 6.65 25.60 0.17 -31.63 16 6 H 0.04 2.29 7.57 -2.91 -0.02 2.27 16 7 C -0.02 -1.18 5.15 84.65 0.44 -0.75 16 8 N -0.93 -54.70 12.81 21.45 0.27 -54.42 16 9 Si 1.10 49.47 29.91 68.60 2.05 51.52 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.66 -25.58 5.27 -447.12 -2.36 -27.94 16 14 C 0.09 3.12 0.82 4.55 0.00 3.13 16 15 C -0.15 -5.61 6.29 71.98 0.45 -5.16 16 16 C -0.15 -4.87 5.50 31.61 0.17 -4.70 16 17 C 0.05 1.49 7.63 72.49 0.55 2.04 16 18 O -0.39 -11.91 11.34 -148.98 -1.69 -13.60 16 19 C 0.08 2.55 3.52 31.10 0.11 2.66 16 20 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 21 C -0.14 -3.76 8.38 71.99 0.60 -3.16 16 22 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.30 7.44 -2.39 -0.02 2.28 16 25 H 0.03 1.61 6.33 -2.39 -0.02 1.59 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.26 15.43 6.29 -92.71 -0.58 14.84 16 28 H 0.33 12.94 8.18 -89.69 -0.73 12.20 16 29 H 0.04 1.77 6.11 -2.39 -0.01 1.76 16 30 H 0.05 1.82 7.64 -2.38 -0.02 1.80 16 31 H 0.05 2.00 6.84 -2.39 -0.02 1.99 16 32 H 0.06 2.06 7.73 -2.38 -0.02 2.04 16 33 H 0.08 2.71 6.21 -2.39 -0.01 2.69 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.67 6.66 -2.39 -0.02 1.66 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.87 7.75 -2.39 -0.02 1.85 16 Total: -1.00 -57.89 286.75 2.11 -55.78 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.48 Total: 25.07 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.35 Total: -36.40 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.08 Total: -82.36 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.69 Total: -13.60 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -57.89 2.11 -55.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234007659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.930 kcal (2) G-P(sol) polarization free energy of solvation -57.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds