Wall clock time and date at job start Mon Mar 30 2020 03:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47116 * 304.00058 * 3 2 1 5 5 C 1.50702 * 109.47000 * 184.00237 * 3 2 1 6 6 H 1.07998 * 120.00163 * 239.99836 * 5 3 2 7 7 C 1.37884 * 119.99793 * 59.99897 * 5 3 2 8 8 N 1.31513 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47350 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47148 * 120.00050 * 9 7 5 12 12 H 1.48501 * 109.46963 * 240.00218 * 9 7 5 13 13 N 1.46900 * 109.47242 * 64.00407 * 3 2 1 14 14 C 1.46900 * 110.99940 * 203.92540 * 13 3 2 15 15 C 1.52997 * 109.47650 * 85.44429 * 14 13 3 16 16 C 1.52993 * 109.47297 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47294 * 300.00107 * 16 15 14 18 18 O 1.42898 * 109.47102 * 299.99898 * 17 16 15 19 19 C 1.52997 * 109.47036 * 59.99733 * 17 16 15 20 20 C 1.52993 * 109.47297 * 300.00265 * 19 17 16 21 21 H 1.08997 * 109.47421 * 294.92337 * 1 2 3 22 22 H 1.09002 * 109.47073 * 54.92804 * 1 2 3 23 23 H 1.09002 * 109.47228 * 174.92607 * 1 2 3 24 24 H 1.09002 * 109.47214 * 239.99939 * 2 1 3 25 25 H 1.08998 * 109.46671 * 120.00046 * 2 1 3 26 26 H 0.96993 * 120.00096 * 180.02562 * 8 7 5 27 27 H 1.00893 * 111.00400 * 79.96703 * 13 3 2 28 28 H 1.08999 * 109.47006 * 325.44230 * 14 13 3 29 29 H 1.08999 * 109.47079 * 59.99845 * 15 14 13 30 30 H 1.09006 * 109.47204 * 300.00344 * 15 14 13 31 31 H 1.09007 * 109.46966 * 179.97438 * 16 15 14 32 32 H 1.08995 * 109.47347 * 60.00387 * 16 15 14 33 33 H 1.08997 * 109.47085 * 179.97438 * 17 16 15 34 34 H 0.96700 * 114.00096 * 179.97438 * 18 17 16 35 35 H 1.09008 * 109.46852 * 60.00382 * 19 17 16 36 36 H 1.09006 * 109.47204 * 179.97438 * 19 17 16 37 37 H 1.09007 * 109.46966 * 180.02562 * 20 19 17 38 38 H 1.08995 * 109.47347 * 299.99613 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4437 -0.0992 6 1 4.1362 1.8928 0.6842 7 6 4.1631 0.8714 -1.1900 8 7 3.4416 0.3249 -2.1442 9 14 6.0271 0.8722 -1.3126 10 1 6.6013 1.5443 -0.1194 11 1 6.5195 -0.5273 -1.3779 12 1 6.4422 1.6008 -2.5382 13 7 1.6309 2.1065 1.2448 14 6 1.5795 3.5644 1.0716 15 6 0.2170 3.9626 0.5009 16 6 0.1634 5.4810 0.3210 17 6 0.3679 6.1625 1.6754 18 8 -0.6636 5.7528 2.5754 19 6 1.7305 5.7643 2.2462 20 6 1.7841 4.2459 2.4260 21 1 -0.3634 0.4330 0.9319 22 1 -0.3633 0.5905 -0.8411 23 1 -0.3634 -1.0236 -0.0909 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8773 -0.0780 -2.9114 27 1 2.2420 1.8543 2.0070 28 1 2.3664 3.8765 0.3849 29 1 -0.5698 3.6504 1.1875 30 1 0.0711 3.4767 -0.4639 31 1 -0.8072 5.7646 -0.0860 32 1 0.9502 5.7936 -0.3655 33 1 0.3302 7.2443 1.5472 34 1 -0.5966 6.1467 3.4560 35 1 2.5174 6.0769 1.5596 36 1 1.8764 6.2502 3.2109 37 1 2.7547 3.9623 2.8330 38 1 0.9973 3.9334 3.1125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234037892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:22 Heat of formation + Delta-G solvation = -78.919062 kcal Electronic energy + Delta-G solvation = -16817.293658 eV Core-core repulsion = 14272.302264 eV Total energy + Delta-G solvation = -2544.991394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.96296 -36.26321 -34.25165 -31.94342 -30.86218 -30.39896 -27.80745 -25.57703 -22.84233 -22.32454 -21.06889 -19.33335 -19.20107 -16.64275 -16.51701 -15.57633 -14.82424 -14.52524 -14.28130 -13.54003 -13.06795 -12.87221 -12.77059 -12.34434 -12.00111 -11.71886 -11.62873 -11.25922 -11.10494 -10.95639 -10.78922 -10.66215 -10.55548 -10.27643 -10.01851 -9.74210 -9.54455 -9.42450 -9.32263 -8.94109 -8.34087 -7.15243 -5.96287 -4.09335 3.26222 3.34802 3.37754 4.39663 4.41274 4.97249 4.98274 5.11243 5.28104 5.45645 5.59078 5.73758 5.79783 5.88801 5.94682 6.11187 6.22031 6.38072 6.43756 6.46066 6.56756 6.62589 6.70034 6.79205 6.87476 7.09551 7.20572 7.24799 7.52699 7.66612 7.77598 7.82452 8.15342 8.23792 8.41887 8.76111 9.05591 9.58152 11.03275 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.007942 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.966269 B = 3524.691595 C = 4065.182019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.685 5.685 14 C 0.095 3.905 15 C -0.098 4.098 16 C -0.112 4.112 17 C 0.107 3.893 18 O -0.560 6.560 19 C -0.148 4.148 20 C -0.114 4.114 21 H 0.047 0.953 22 H 0.036 0.964 23 H 0.023 0.977 24 H 0.089 0.911 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.325 0.675 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.369 0.631 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 9.462 6.900 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.315 5.315 14 C -0.015 4.015 15 C -0.137 4.137 16 C -0.150 4.150 17 C 0.049 3.951 18 O -0.365 6.365 19 C -0.187 4.187 20 C -0.152 4.152 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.215 0.785 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.428 8.920 6.062 12.074 hybrid contribution 2.381 0.533 0.241 2.452 sum -3.047 9.452 6.303 11.763 Atomic orbital electron populations 1.21681 0.98977 0.98124 1.00451 1.21494 0.92108 0.99367 1.01522 1.19172 0.92364 0.91050 0.86704 0.94939 1.21937 0.92895 1.37598 1.05759 0.92964 1.24938 0.97836 0.95114 0.95701 1.69889 1.34710 1.38149 1.09595 0.86632 0.86318 0.77726 0.77854 1.19996 1.20967 1.21099 1.60893 1.56482 1.05063 1.09022 1.21284 0.95953 0.89644 0.94646 1.21394 0.98269 0.92764 1.01242 1.21563 1.01707 0.97401 0.94373 1.21774 0.86569 0.96175 0.90610 1.86574 1.51216 1.73256 1.25410 1.22210 0.97941 0.97776 1.00749 1.21604 1.01242 0.93618 0.98703 0.93392 0.94507 0.95818 0.89322 0.95229 0.92999 0.85807 0.93920 0.91285 0.92293 0.91900 0.91043 0.93632 0.78481 0.91261 0.92397 0.92729 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.73 37.16 0.36 -2.51 16 2 C -0.11 -2.60 5.44 -26.73 -0.15 -2.75 16 3 C 0.22 5.37 1.80 -68.86 -0.12 5.24 16 4 H 0.03 0.90 7.15 -51.93 -0.37 0.53 16 5 C -0.54 -14.71 8.21 -34.44 -0.28 -15.00 16 6 H 0.05 1.41 7.76 -52.49 -0.41 1.01 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.20 11.30 55.43 0.63 -24.58 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.69 -14.61 5.55 -100.96 -0.56 -15.17 16 14 C 0.10 1.80 2.30 -67.72 -0.16 1.65 16 15 C -0.10 -1.76 5.27 -26.74 -0.14 -1.90 16 16 C -0.11 -1.65 5.66 -26.74 -0.15 -1.80 16 17 C 0.11 1.36 3.77 -26.73 -0.10 1.26 16 18 O -0.56 -7.22 11.97 -35.23 -0.42 -7.64 16 19 C -0.15 -1.90 5.63 -26.74 -0.15 -2.05 16 20 C -0.11 -1.78 5.04 -26.74 -0.13 -1.91 16 21 H 0.05 0.98 7.87 -51.93 -0.41 0.58 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.33 6.90 8.06 -39.30 -0.32 6.58 16 28 H 0.04 0.92 7.59 -51.93 -0.39 0.53 16 29 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 30 H 0.06 1.15 7.45 -51.93 -0.39 0.77 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.37 3.15 9.08 45.56 0.41 3.56 16 35 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 LS Contribution 295.70 15.07 4.46 4.46 Total: -1.00 -28.81 295.70 -7.96 -36.77 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.92 Total: 7.95 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.12 Total: -18.03 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.07 Total: -39.75 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.42 Total: -7.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.81 -7.96 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234037892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.151 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds