Wall clock time and date at job start Mon Mar 30 2020 03:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47116 * 304.00058 * 3 2 1 5 5 C 1.50702 * 109.47000 * 184.00237 * 3 2 1 6 6 H 1.07998 * 120.00163 * 239.99836 * 5 3 2 7 7 C 1.37884 * 119.99793 * 59.99897 * 5 3 2 8 8 N 1.31513 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47350 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47148 * 120.00050 * 9 7 5 12 12 H 1.48501 * 109.46963 * 240.00218 * 9 7 5 13 13 N 1.46900 * 109.47242 * 64.00407 * 3 2 1 14 14 C 1.46900 * 110.99940 * 203.92540 * 13 3 2 15 15 C 1.52997 * 109.47650 * 85.44429 * 14 13 3 16 16 C 1.52993 * 109.47297 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47294 * 300.00107 * 16 15 14 18 18 O 1.42898 * 109.47102 * 299.99898 * 17 16 15 19 19 C 1.52997 * 109.47036 * 59.99733 * 17 16 15 20 20 C 1.52993 * 109.47297 * 300.00265 * 19 17 16 21 21 H 1.08997 * 109.47421 * 294.92337 * 1 2 3 22 22 H 1.09002 * 109.47073 * 54.92804 * 1 2 3 23 23 H 1.09002 * 109.47228 * 174.92607 * 1 2 3 24 24 H 1.09002 * 109.47214 * 239.99939 * 2 1 3 25 25 H 1.08998 * 109.46671 * 120.00046 * 2 1 3 26 26 H 0.96993 * 120.00096 * 180.02562 * 8 7 5 27 27 H 1.00893 * 111.00400 * 79.96703 * 13 3 2 28 28 H 1.08999 * 109.47006 * 325.44230 * 14 13 3 29 29 H 1.08999 * 109.47079 * 59.99845 * 15 14 13 30 30 H 1.09006 * 109.47204 * 300.00344 * 15 14 13 31 31 H 1.09007 * 109.46966 * 179.97438 * 16 15 14 32 32 H 1.08995 * 109.47347 * 60.00387 * 16 15 14 33 33 H 1.08997 * 109.47085 * 179.97438 * 17 16 15 34 34 H 0.96700 * 114.00096 * 179.97438 * 18 17 16 35 35 H 1.09008 * 109.46852 * 60.00382 * 19 17 16 36 36 H 1.09006 * 109.47204 * 179.97438 * 19 17 16 37 37 H 1.09007 * 109.46966 * 180.02562 * 20 19 17 38 38 H 1.08995 * 109.47347 * 299.99613 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4437 -0.0992 6 1 4.1362 1.8928 0.6842 7 6 4.1631 0.8714 -1.1900 8 7 3.4416 0.3249 -2.1442 9 14 6.0271 0.8722 -1.3126 10 1 6.6013 1.5443 -0.1194 11 1 6.5195 -0.5273 -1.3779 12 1 6.4422 1.6008 -2.5382 13 7 1.6309 2.1065 1.2448 14 6 1.5795 3.5644 1.0716 15 6 0.2170 3.9626 0.5009 16 6 0.1634 5.4810 0.3210 17 6 0.3679 6.1625 1.6754 18 8 -0.6636 5.7528 2.5754 19 6 1.7305 5.7643 2.2462 20 6 1.7841 4.2459 2.4260 21 1 -0.3634 0.4330 0.9319 22 1 -0.3633 0.5905 -0.8411 23 1 -0.3634 -1.0236 -0.0909 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8773 -0.0780 -2.9114 27 1 2.2420 1.8543 2.0070 28 1 2.3664 3.8765 0.3849 29 1 -0.5698 3.6504 1.1875 30 1 0.0711 3.4767 -0.4639 31 1 -0.8072 5.7646 -0.0860 32 1 0.9502 5.7936 -0.3655 33 1 0.3302 7.2443 1.5472 34 1 -0.5966 6.1467 3.4560 35 1 2.5174 6.0769 1.5596 36 1 1.8764 6.2502 3.2109 37 1 2.7547 3.9623 2.8330 38 1 0.9973 3.9334 3.1125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234037892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:22 Heat of formation + Delta-G solvation = -99.005908 kcal Electronic energy + Delta-G solvation = -16818.164689 eV Core-core repulsion = 14272.302264 eV Total energy + Delta-G solvation = -2545.862425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20648 -37.85673 -35.73475 -33.85106 -32.50179 -31.65220 -29.41307 -27.43014 -24.69103 -23.63935 -22.41066 -21.24489 -20.51782 -18.61643 -17.65788 -16.84919 -16.74171 -16.01189 -15.58390 -15.31629 -14.71955 -14.47775 -14.20210 -13.76757 -13.37454 -13.29355 -13.11153 -13.01336 -12.85901 -12.65962 -12.52680 -12.14826 -12.07335 -11.81314 -11.60736 -11.49946 -11.31793 -10.99372 -10.76000 -10.55076 -10.45535 -9.00482 -8.05108 -6.28129 1.35416 1.37792 1.47975 2.38893 3.13425 3.42280 3.70266 3.87845 3.93275 4.23748 4.35996 4.46151 4.54457 4.61347 4.67275 4.69844 4.75198 4.85325 4.94015 5.04802 5.11436 5.14350 5.22852 5.33069 5.34768 5.40860 5.44058 5.50794 5.59625 5.69078 5.79405 6.12250 6.22424 6.44275 6.87603 7.04805 7.06197 7.43586 8.91054 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.007942 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.966269 B = 3524.691595 C = 4065.182019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.557 4.557 6 H 0.048 0.952 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.094 3.906 15 C -0.090 4.090 16 C -0.114 4.114 17 C 0.113 3.887 18 O -0.577 6.577 19 C -0.144 4.144 20 C -0.106 4.106 21 H 0.055 0.945 22 H 0.027 0.973 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.327 0.673 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.390 0.610 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 10.816 8.321 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.596 4.596 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.308 5.308 14 C -0.016 4.016 15 C -0.129 4.129 16 C -0.152 4.152 17 C 0.055 3.945 18 O -0.385 6.385 19 C -0.182 4.182 20 C -0.144 4.144 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.266 10.289 7.510 13.784 hybrid contribution 2.290 0.106 -0.196 2.301 sum -2.976 10.395 7.314 13.054 Atomic orbital electron populations 1.21530 0.96505 0.99403 1.00481 1.21369 0.94306 0.98587 0.99934 1.18904 0.91265 0.91241 0.86992 0.98524 1.22210 0.94089 1.37530 1.05809 0.93359 1.25693 1.02249 0.94828 0.95420 1.70020 1.36414 1.38666 1.10016 0.85622 0.80990 0.77813 0.77881 1.19436 1.20462 1.20756 1.60853 1.55883 1.06687 1.07406 1.21359 0.95572 0.88295 0.96369 1.21276 0.97145 0.95273 0.99182 1.21577 1.02290 0.94869 0.96451 1.21701 0.86268 0.97375 0.89198 1.86528 1.51159 1.73948 1.26868 1.22207 0.98107 0.95378 1.02506 1.21521 1.01114 0.95688 0.96084 0.92569 0.95335 0.93702 0.92182 0.95364 0.92915 0.85688 0.97057 0.91983 0.95334 0.91077 0.90981 0.90628 0.76096 0.91534 0.89176 0.92968 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 9.73 71.98 0.70 -4.49 16 2 C -0.10 -5.16 5.44 30.59 0.17 -4.99 16 3 C 0.22 11.59 1.80 44.17 0.08 11.67 16 4 H 0.00 -0.19 7.15 -2.39 -0.02 -0.20 16 5 C -0.56 -30.87 8.21 25.60 0.21 -30.66 16 6 H 0.05 2.65 7.76 -2.91 -0.02 2.63 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -53.15 11.30 21.45 0.24 -52.91 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.68 -29.47 5.55 -473.32 -2.63 -32.10 16 14 C 0.09 3.62 2.30 44.91 0.10 3.72 16 15 C -0.09 -3.27 5.27 30.59 0.16 -3.10 16 16 C -0.11 -3.21 5.66 30.59 0.17 -3.04 16 17 C 0.11 2.53 3.77 30.59 0.12 2.65 16 18 O -0.58 -13.07 11.97 -148.98 -1.78 -14.85 16 19 C -0.14 -3.26 5.63 30.59 0.17 -3.09 16 20 C -0.11 -3.16 5.04 30.59 0.15 -3.01 16 21 H 0.06 2.28 7.87 -2.39 -0.02 2.26 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 3.36 5.97 -2.39 -0.01 3.34 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.33 13.93 8.06 -89.70 -0.72 13.21 16 28 H 0.01 0.51 7.59 -2.39 -0.02 0.49 16 29 H 0.06 2.31 7.68 -2.39 -0.02 2.29 16 30 H 0.03 1.16 7.45 -2.38 -0.02 1.15 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.39 5.16 9.08 -74.06 -0.67 4.49 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 37 H 0.05 1.57 8.12 -2.38 -0.02 1.55 16 38 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16 Total: -1.00 -62.79 295.70 -0.02 -62.81 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.36 Total: 23.98 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 2.48 Total: -32.90 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.39 Total: -85.00 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.78 Total: -14.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.79 -0.02 -62.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234037892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.195 kcal (2) G-P(sol) polarization free energy of solvation -62.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds