Wall clock time and date at job start Mon Mar 30 2020 03:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 H 1.08999 * 109.46986 * 306.16423 * 3 2 1 5 5 C 1.50701 * 109.47269 * 186.16719 * 3 2 1 6 6 H 1.08000 * 119.99847 * 245.25218 * 5 3 2 7 7 C 1.37875 * 120.00176 * 65.25475 * 5 3 2 8 8 N 1.31515 * 119.99981 * 191.21957 * 7 5 3 9 9 Si 1.86801 * 119.99779 * 11.21626 * 7 5 3 10 10 H 1.48504 * 109.47022 * 91.99147 * 9 7 5 11 11 H 1.48498 * 109.46861 * 211.98934 * 9 7 5 12 12 H 1.48494 * 109.47357 * 331.99021 * 9 7 5 13 13 N 1.46905 * 109.47381 * 66.16472 * 3 2 1 14 14 C 1.46901 * 110.99748 * 251.41445 * 13 3 2 15 15 C 1.52998 * 109.46534 * 181.16276 * 14 13 3 16 16 O 1.42904 * 112.85335 * 287.92087 * 15 14 13 17 17 C 1.42906 * 113.99573 * 297.41512 * 16 15 14 18 18 C 1.53782 * 113.61486 * 156.61668 * 15 14 13 19 19 C 1.53780 * 87.08309 * 220.01718 * 18 15 14 20 20 C 1.53782 * 87.08124 * 25.43088 * 19 18 15 21 21 H 1.09001 * 109.47306 * 297.65676 * 1 2 3 22 22 H 1.08996 * 109.46836 * 57.65707 * 1 2 3 23 23 H 1.08999 * 109.46916 * 177.65478 * 1 2 3 24 24 H 1.08998 * 109.47425 * 239.99562 * 2 1 3 25 25 H 1.09002 * 109.47068 * 119.99573 * 2 1 3 26 26 H 0.97005 * 119.99773 * 180.02562 * 8 7 5 27 27 H 1.00895 * 110.99710 * 127.45579 * 13 3 2 28 28 H 1.08994 * 109.46807 * 301.15738 * 14 13 3 29 29 H 1.08993 * 109.47613 * 61.16182 * 14 13 3 30 30 H 1.08990 * 109.47222 * 305.68797 * 17 16 15 31 31 H 1.08994 * 109.46768 * 65.69575 * 17 16 15 32 32 H 1.09004 * 109.46681 * 185.68725 * 17 16 15 33 33 H 1.09000 * 113.61067 * 334.56749 * 18 15 14 34 34 H 1.08998 * 113.61888 * 105.46504 * 18 15 14 35 35 H 1.08996 * 113.61325 * 270.87875 * 19 18 15 36 36 H 1.09004 * 113.61059 * 139.97823 * 19 18 15 37 37 H 1.08999 * 113.61286 * 220.02202 * 20 19 18 38 38 H 1.09004 * 113.61404 * 89.11461 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5894 1.9872 -0.8297 5 6 3.5393 1.4452 -0.1526 6 1 4.1632 1.8071 0.6512 7 6 4.1144 0.9859 -1.3185 8 7 5.4121 0.7796 -1.3747 9 14 3.0504 0.6564 -2.8181 10 1 2.9991 1.8745 -3.6659 11 1 3.6296 -0.4661 -3.5989 12 1 1.6768 0.2989 -2.3816 13 7 1.6756 2.0908 1.2669 14 6 0.6169 3.0884 1.0622 15 6 0.2854 3.7610 2.3958 16 8 -0.4241 2.9012 3.2899 17 6 -1.7027 2.4861 2.8049 18 6 -0.3502 5.1529 2.2426 19 6 0.5142 5.5926 3.4360 20 6 1.4872 4.4678 3.0448 21 1 -0.3634 0.4770 0.9102 22 1 -0.3633 0.5498 -0.8682 23 1 -0.3633 -1.0268 -0.0421 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.8167 0.4567 -2.1951 27 1 2.4835 2.5058 1.7061 28 1 0.9588 3.8403 0.3511 29 1 -0.2744 2.5975 0.6715 30 1 -2.2932 3.3632 2.5406 31 1 -1.5707 1.8579 1.9241 32 1 -2.2192 1.9205 3.5804 33 1 -0.0906 5.6510 1.3084 34 1 -1.4204 5.1694 2.4489 35 1 0.0346 5.4386 4.4027 36 1 0.9350 6.5921 3.3256 37 1 1.9002 3.9312 3.8989 38 1 2.2491 4.7786 2.3300 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234038443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:50 Heat of formation + Delta-G solvation = -25.135481 kcal Electronic energy + Delta-G solvation = -16865.724440 eV Core-core repulsion = 14323.065278 eV Total energy + Delta-G solvation = -2542.659163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80583 -36.16608 -35.34996 -32.35228 -31.35871 -28.06795 -26.91213 -25.80256 -24.90478 -22.50679 -21.78047 -19.57368 -19.19781 -17.10756 -16.04477 -15.49526 -15.29154 -14.97751 -14.10163 -13.95674 -13.85086 -13.25829 -12.88876 -12.62942 -12.40425 -12.15418 -11.81268 -11.53691 -11.33801 -11.25711 -10.95077 -10.79603 -10.71883 -10.56952 -10.37129 -9.85253 -9.82739 -9.32365 -9.09375 -8.97913 -8.47326 -7.34374 -6.12506 -4.09995 3.26009 3.36038 3.39501 3.89318 4.39703 4.56192 4.75078 4.96296 5.04248 5.19569 5.40875 5.48472 5.57540 5.62305 5.79933 5.82319 5.83155 5.89972 5.97011 6.08633 6.12439 6.19923 6.23788 6.31438 6.38912 6.44993 6.68533 6.81335 7.08277 7.10477 7.48269 7.51827 7.65478 8.02002 8.40844 8.62798 8.95178 9.52560 11.00386 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032592 B = 0.008022 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.893393 B = 3489.675023 C = 3935.246455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.190 3.810 4 H 0.005 0.995 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.894 5.894 9 Si 0.863 3.137 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.245 1.245 13 N -0.671 5.671 14 C 0.046 3.954 15 C 0.098 3.902 16 O -0.352 6.352 17 C 0.030 3.970 18 C -0.167 4.167 19 C -0.135 4.135 20 C -0.123 4.123 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.339 0.661 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 6.490 5.810 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.081 3.919 4 H 0.023 0.977 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.169 1.169 13 N -0.303 5.303 14 C -0.085 4.085 15 C 0.058 3.942 16 O -0.270 6.270 17 C -0.067 4.067 18 C -0.205 4.205 19 C -0.172 4.172 20 C -0.161 4.161 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.158 0.842 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.914 5.856 6.054 15.418 hybrid contribution -0.075 0.507 -1.718 1.793 sum -12.988 6.363 4.336 15.099 Atomic orbital electron populations 1.21844 0.98757 0.99340 1.00469 1.21895 0.92708 0.99426 1.00781 1.19473 0.95254 0.90919 0.86299 0.97707 1.21358 0.89662 1.43644 1.02454 0.90675 1.24928 0.94758 0.94272 0.98733 1.69956 1.10580 1.45069 1.27521 0.87253 0.82637 0.78011 0.83138 1.20924 1.21335 1.16940 1.60503 1.12701 1.30903 1.26149 1.22413 0.97199 0.94499 0.94350 1.22566 0.93443 0.87782 0.90406 1.87897 1.30290 1.66319 1.42535 1.22699 0.85089 0.98517 1.00358 1.23565 0.99837 0.97660 0.99482 1.22760 0.97832 0.98395 0.98229 1.22921 0.95803 0.95914 1.01425 0.92565 0.94670 0.94750 0.93061 0.92354 0.92675 0.84171 0.95083 0.91609 0.94641 0.93455 0.90168 0.89444 0.91377 0.90109 0.91632 0.90255 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.16 37.16 0.34 -2.43 16 2 C -0.11 -2.46 4.81 -26.73 -0.13 -2.59 16 3 C 0.19 4.46 1.73 -68.86 -0.12 4.34 16 4 H 0.01 0.13 6.34 -51.93 -0.33 -0.20 16 5 C -0.53 -14.77 9.05 -34.44 -0.31 -15.09 16 6 H 0.08 2.25 7.62 -52.49 -0.40 1.85 16 7 C 0.08 2.17 5.38 -17.82 -0.10 2.07 16 8 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.86 21.15 25.75 -169.99 -4.38 16.77 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.67 5.26 56.52 0.30 -5.37 16 13 N -0.67 -13.84 6.02 -107.95 -0.65 -14.49 16 14 C 0.05 0.80 4.60 -3.82 -0.02 0.78 16 15 C 0.10 1.47 0.91 -89.81 -0.08 1.39 16 16 O -0.35 -5.56 10.56 -35.23 -0.37 -5.94 16 17 C 0.03 0.38 10.52 101.05 1.06 1.45 16 18 C -0.17 -2.06 7.19 -25.92 -0.19 -2.25 16 19 C -0.13 -1.59 8.02 -25.92 -0.21 -1.80 16 20 C -0.12 -1.73 6.50 -25.92 -0.17 -1.90 16 21 H 0.06 1.02 5.82 -51.93 -0.30 0.72 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 1.20 4.64 -51.93 -0.24 0.96 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.34 7.17 6.90 -39.29 -0.27 6.90 16 28 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 29 H 0.07 1.13 5.23 -51.93 -0.27 0.86 16 30 H 0.04 0.39 6.75 -51.93 -0.35 0.04 16 31 H 0.05 0.64 5.65 -51.93 -0.29 0.35 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 34 H 0.07 0.78 6.90 -51.93 -0.36 0.42 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -29.79 288.71 -6.45 -36.24 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.26 Total: 5.46 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.12 Total: -40.86 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.37 Total: -5.94 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.38 Total: 16.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.79 -6.45 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234038443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.105 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds