Wall clock time and date at job start Mon Mar 30 2020 03:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 H 1.08999 * 109.46986 * 306.16423 * 3 2 1 5 5 C 1.50701 * 109.47269 * 186.16719 * 3 2 1 6 6 H 1.08000 * 119.99847 * 245.25218 * 5 3 2 7 7 C 1.37875 * 120.00176 * 65.25475 * 5 3 2 8 8 N 1.31515 * 119.99981 * 191.21957 * 7 5 3 9 9 Si 1.86801 * 119.99779 * 11.21626 * 7 5 3 10 10 H 1.48504 * 109.47022 * 91.99147 * 9 7 5 11 11 H 1.48498 * 109.46861 * 211.98934 * 9 7 5 12 12 H 1.48494 * 109.47357 * 331.99021 * 9 7 5 13 13 N 1.46905 * 109.47381 * 66.16472 * 3 2 1 14 14 C 1.46901 * 110.99748 * 251.41445 * 13 3 2 15 15 C 1.52998 * 109.46534 * 181.16276 * 14 13 3 16 16 O 1.42904 * 112.85335 * 287.92087 * 15 14 13 17 17 C 1.42906 * 113.99573 * 297.41512 * 16 15 14 18 18 C 1.53782 * 113.61486 * 156.61668 * 15 14 13 19 19 C 1.53780 * 87.08309 * 220.01718 * 18 15 14 20 20 C 1.53782 * 87.08124 * 25.43088 * 19 18 15 21 21 H 1.09001 * 109.47306 * 297.65676 * 1 2 3 22 22 H 1.08996 * 109.46836 * 57.65707 * 1 2 3 23 23 H 1.08999 * 109.46916 * 177.65478 * 1 2 3 24 24 H 1.08998 * 109.47425 * 239.99562 * 2 1 3 25 25 H 1.09002 * 109.47068 * 119.99573 * 2 1 3 26 26 H 0.97005 * 119.99773 * 180.02562 * 8 7 5 27 27 H 1.00895 * 110.99710 * 127.45579 * 13 3 2 28 28 H 1.08994 * 109.46807 * 301.15738 * 14 13 3 29 29 H 1.08993 * 109.47613 * 61.16182 * 14 13 3 30 30 H 1.08990 * 109.47222 * 305.68797 * 17 16 15 31 31 H 1.08994 * 109.46768 * 65.69575 * 17 16 15 32 32 H 1.09004 * 109.46681 * 185.68725 * 17 16 15 33 33 H 1.09000 * 113.61067 * 334.56749 * 18 15 14 34 34 H 1.08998 * 113.61888 * 105.46504 * 18 15 14 35 35 H 1.08996 * 113.61325 * 270.87875 * 19 18 15 36 36 H 1.09004 * 113.61059 * 139.97823 * 19 18 15 37 37 H 1.08999 * 113.61286 * 220.02202 * 20 19 18 38 38 H 1.09004 * 113.61404 * 89.11461 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5894 1.9872 -0.8297 5 6 3.5393 1.4452 -0.1526 6 1 4.1632 1.8071 0.6512 7 6 4.1144 0.9859 -1.3185 8 7 5.4121 0.7796 -1.3747 9 14 3.0504 0.6564 -2.8181 10 1 2.9991 1.8745 -3.6659 11 1 3.6296 -0.4661 -3.5989 12 1 1.6768 0.2989 -2.3816 13 7 1.6756 2.0908 1.2669 14 6 0.6169 3.0884 1.0622 15 6 0.2854 3.7610 2.3958 16 8 -0.4241 2.9012 3.2899 17 6 -1.7027 2.4861 2.8049 18 6 -0.3502 5.1529 2.2426 19 6 0.5142 5.5926 3.4360 20 6 1.4872 4.4678 3.0448 21 1 -0.3634 0.4770 0.9102 22 1 -0.3633 0.5498 -0.8682 23 1 -0.3633 -1.0268 -0.0421 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.8167 0.4567 -2.1951 27 1 2.4835 2.5058 1.7061 28 1 0.9588 3.8403 0.3511 29 1 -0.2744 2.5975 0.6715 30 1 -2.2932 3.3632 2.5406 31 1 -1.5707 1.8579 1.9241 32 1 -2.2192 1.9205 3.5804 33 1 -0.0906 5.6510 1.3084 34 1 -1.4204 5.1694 2.4489 35 1 0.0346 5.4386 4.4027 36 1 0.9350 6.5921 3.3256 37 1 1.9002 3.9312 3.8989 38 1 2.2491 4.7786 2.3300 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234038443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:50 Heat of formation + Delta-G solvation = -46.057176 kcal Electronic energy + Delta-G solvation = -16866.631673 eV Core-core repulsion = 14323.065278 eV Total energy + Delta-G solvation = -2543.566396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94276 -37.91028 -36.43444 -34.41591 -33.01081 -29.78960 -27.93018 -27.23402 -26.14782 -24.26460 -23.02835 -21.40592 -20.29676 -19.11364 -17.38737 -16.99964 -16.65403 -16.12038 -15.72131 -15.40798 -15.11596 -14.89294 -14.53037 -14.26316 -13.80544 -13.52499 -13.21228 -13.11410 -12.82632 -12.66585 -12.42317 -12.23424 -12.20439 -11.81534 -11.69906 -11.64889 -11.15496 -11.07515 -10.94655 -10.67027 -10.13978 -9.03135 -8.33391 -6.35644 1.31727 1.35458 1.46313 2.32851 2.81206 3.01586 3.35900 3.70211 3.88669 3.93771 4.02046 4.43602 4.44587 4.50347 4.54776 4.56139 4.62239 4.70113 4.73054 4.80797 4.86146 4.89360 4.95368 5.06093 5.12599 5.19959 5.31570 5.32997 5.39592 5.43761 5.54786 5.78687 6.02026 6.40280 6.50611 6.67280 6.88283 7.31503 8.82897 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032592 B = 0.008022 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.893393 B = 3489.675023 C = 3935.246455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.196 3.804 4 H 0.006 0.994 5 C -0.538 4.538 6 H 0.035 0.965 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.220 1.220 13 N -0.672 5.672 14 C 0.045 3.955 15 C 0.093 3.907 16 O -0.373 6.373 17 C 0.024 3.976 18 C -0.156 4.156 19 C -0.122 4.122 20 C -0.133 4.133 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.265 0.735 27 H 0.332 0.668 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 7.079 5.459 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.023 0.977 5 C -0.576 4.576 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.750 3.250 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.143 1.143 13 N -0.303 5.303 14 C -0.085 4.085 15 C 0.052 3.948 16 O -0.292 6.292 17 C -0.072 4.072 18 C -0.194 4.194 19 C -0.159 4.159 20 C -0.171 4.171 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.824 6.454 5.722 18.022 hybrid contribution 0.879 0.333 -1.508 1.777 sum -14.945 6.787 4.214 16.946 Atomic orbital electron populations 1.21733 0.95456 1.01080 1.01161 1.21823 0.95635 0.97939 0.99586 1.19347 0.92234 0.92201 0.87599 0.97675 1.21669 0.91933 1.42662 1.01328 0.94631 1.25806 0.95958 0.94202 1.02000 1.70099 1.12724 1.46882 1.28527 0.86230 0.81980 0.77921 0.78865 1.20408 1.21263 1.14252 1.60510 1.13008 1.32274 1.24475 1.22516 0.96011 0.93791 0.96152 1.22611 0.94407 0.88681 0.89057 1.87878 1.31604 1.66718 1.42970 1.22875 0.84262 0.99434 1.00581 1.23519 1.00684 0.95186 1.00004 1.22707 0.96631 0.98296 0.98289 1.22970 0.96035 0.97151 1.00908 0.92038 0.93794 0.92548 0.94088 0.93836 0.92567 0.84981 0.95376 0.90991 0.92667 0.94408 0.88529 0.88761 0.89850 0.89619 0.89913 0.91494 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.16 71.98 0.66 -4.09 16 2 C -0.11 -4.86 4.81 30.59 0.15 -4.71 16 3 C 0.20 9.14 1.73 44.17 0.08 9.21 16 4 H 0.01 0.26 6.34 -2.39 -0.02 0.24 16 5 C -0.54 -30.60 9.05 25.60 0.23 -30.37 16 6 H 0.04 2.24 7.62 -2.91 -0.02 2.22 16 7 C 0.02 1.08 5.38 84.65 0.46 1.54 16 8 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 9 Si 0.93 43.45 25.75 68.60 1.77 45.22 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.22 -9.33 5.26 99.48 0.52 -8.81 16 13 N -0.67 -27.66 6.02 -495.45 -2.98 -30.64 16 14 C 0.05 1.51 4.60 86.30 0.40 1.91 16 15 C 0.09 2.62 0.91 -10.27 -0.01 2.61 16 16 O -0.37 -11.09 10.56 -148.98 -1.57 -12.66 16 17 C 0.02 0.56 10.52 113.37 1.19 1.75 16 18 C -0.16 -3.39 7.19 31.12 0.22 -3.17 16 19 C -0.12 -2.59 8.02 31.12 0.25 -2.34 16 20 C -0.13 -3.65 6.50 31.12 0.20 -3.45 16 21 H 0.06 2.06 5.82 -2.39 -0.01 2.05 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.85 4.64 -2.39 -0.01 1.84 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 27 H 0.33 14.47 6.90 -89.70 -0.62 13.85 16 28 H 0.03 0.96 7.90 -2.39 -0.02 0.94 16 29 H 0.07 2.31 5.23 -2.39 -0.01 2.30 16 30 H 0.05 1.03 6.75 -2.39 -0.02 1.02 16 31 H 0.04 0.93 5.65 -2.39 -0.01 0.92 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.94 7.95 -2.39 -0.02 1.92 16 34 H 0.08 1.58 6.90 -2.39 -0.02 1.56 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 2.45 8.09 -2.38 -0.02 2.43 16 Total: -1.00 -64.80 288.71 1.57 -63.23 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.23 Total: 24.61 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 3.82 Total: -31.10 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.68 Total: -89.29 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.57 Total: -12.66 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.77 Total: 45.22 kcal Total: -64.80 1.57 -63.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234038443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.169 kcal (2) G-P(sol) polarization free energy of solvation -64.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds