Wall clock time and date at job start Mon Mar 30 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47035 * 2 1 4 4 H 1.08998 * 109.86849 * 306.01117 * 3 2 1 5 5 O 1.43745 * 110.00083 * 67.09359 * 3 2 1 6 6 C 1.44380 * 106.97527 * 146.00889 * 5 3 2 7 7 C 1.54999 * 103.49056 * 319.94247 * 6 5 3 8 8 C 1.54103 * 109.87840 * 185.00004 * 3 2 1 9 9 H 1.08998 * 110.48732 * 357.20448 * 8 3 2 10 10 C 1.52997 * 110.48482 * 119.71971 * 8 3 2 11 11 N 1.46900 * 109.47220 * 184.99848 * 10 8 3 12 12 C 1.46894 * 111.00559 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 H 1.08996 * 109.47166 * 299.99673 * 1 2 3 23 23 H 1.08997 * 109.46805 * 59.99883 * 1 2 3 24 24 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47166 * 240.00327 * 2 1 3 26 26 H 1.09003 * 109.47458 * 119.99891 * 2 1 3 27 27 H 1.09004 * 110.61802 * 78.43982 * 6 5 3 28 28 H 1.08990 * 110.62211 * 201.27916 * 6 5 3 29 29 H 1.09000 * 110.90183 * 278.82508 * 7 6 5 30 30 H 1.08997 * 110.91120 * 155.22145 * 7 6 5 31 31 H 1.09003 * 109.46989 * 65.00066 * 10 8 3 32 32 H 1.09005 * 109.47424 * 304.99842 * 10 8 3 33 33 H 1.00905 * 110.99607 * 303.95664 * 11 10 8 34 34 H 1.09002 * 109.47104 * 59.99767 * 12 11 10 35 35 H 1.08998 * 109.46828 * 300.00600 * 12 11 10 36 36 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99953 * 13 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5953 1.9927 -0.8292 5 8 1.7082 2.0813 1.2442 6 6 2.7837 2.9952 1.5489 7 6 4.0543 2.2076 1.1393 8 6 3.5758 1.4554 -0.1263 9 1 3.9661 0.4378 -0.1382 10 6 4.0030 2.2062 -1.3891 11 7 5.4593 2.1028 -1.5513 12 6 5.9068 2.8142 -2.7561 13 6 7.4252 2.6837 -2.8911 14 6 7.8841 3.4130 -4.1274 15 1 7.1648 3.9193 -4.7540 16 6 9.2225 3.4347 -4.4581 17 7 10.0985 2.8185 -3.6949 18 14 9.7914 4.3393 -5.9902 19 1 9.4252 5.7744 -5.8824 20 1 11.2652 4.2125 -6.1213 21 1 9.1361 3.7496 -7.1853 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.6909 3.9074 0.9594 28 1 2.7999 3.2277 2.6136 29 1 4.3463 1.5067 1.9213 30 1 4.8732 2.8867 0.9019 31 1 3.7208 3.2554 -1.3009 32 1 3.5088 1.7687 -2.2566 33 1 5.9394 2.4430 -0.7316 34 1 5.6379 3.8675 -2.6770 35 1 5.4258 2.3813 -3.6332 36 1 7.6937 1.6302 -2.9703 37 1 7.9064 3.1163 -2.0139 38 1 11.0400 2.8335 -3.9277 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234162930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:27 Heat of formation + Delta-G solvation = -73.911309 kcal Electronic energy + Delta-G solvation = -15767.371247 eV Core-core repulsion = 13222.597005 eV Total energy + Delta-G solvation = -2544.774242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89071 -36.08861 -33.72910 -33.31257 -31.95055 -29.38833 -28.23924 -25.23535 -23.42480 -23.19061 -21.21008 -20.56230 -20.09997 -16.33971 -16.27328 -16.18940 -15.68582 -15.00499 -14.46772 -13.93359 -13.65724 -13.46452 -13.38276 -12.91745 -12.73480 -12.42305 -12.11479 -11.61529 -11.48672 -11.21583 -10.96283 -10.93154 -10.79424 -10.70804 -10.64939 -10.44468 -9.99034 -9.73137 -9.37051 -9.16871 -8.36169 -7.85712 -6.00673 -4.03508 3.32798 3.37168 3.39502 3.80774 4.33813 4.47970 4.51107 4.87898 4.91687 5.00168 5.06412 5.18376 5.24628 5.35152 5.41191 5.48748 5.62069 5.68709 5.73343 5.83303 5.85934 5.87085 6.03290 6.06492 6.15223 6.27330 6.31232 6.41530 6.85248 6.95581 7.44704 7.70543 7.80390 7.93029 8.06685 8.42138 9.03481 9.60297 11.10744 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052442 B = 0.004172 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.797869 B = 6709.999765 C = 6906.527494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.081 3.919 4 H 0.067 0.933 5 O -0.376 6.376 6 C 0.046 3.954 7 C -0.151 4.151 8 C -0.117 4.117 9 H 0.095 0.905 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.335 0.665 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.760 -2.572 9.308 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.023 3.977 4 H 0.085 0.915 5 O -0.295 6.295 6 C -0.030 4.030 7 C -0.189 4.189 8 C -0.136 4.136 9 H 0.113 0.887 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.063 4.063 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.031 0.969 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.787 -3.260 9.120 18.521 hybrid contribution 0.568 1.521 -0.717 1.775 sum -15.220 -1.739 8.403 17.472 Atomic orbital electron populations 1.21724 0.95531 1.01326 1.02088 1.21705 0.96478 0.94923 1.02765 1.22838 0.93862 0.93966 0.87072 0.91488 1.88840 1.43748 1.57063 1.39844 1.23538 0.85783 0.92743 1.00968 1.23177 0.98283 0.99666 0.97748 1.22638 0.94355 1.01657 0.94971 0.88691 1.21950 0.90680 0.97193 0.96505 1.60617 1.03182 1.61530 1.06865 1.22166 1.00011 0.93691 0.90418 1.19064 0.87627 0.97884 0.96625 1.21142 0.92546 1.33324 1.09209 0.92813 1.25002 0.96853 0.95605 0.96868 1.69962 1.02092 1.43116 1.38080 0.86641 0.77509 0.80223 0.83507 1.20286 1.21243 1.20200 0.92221 0.92926 0.92916 0.90592 0.91279 0.92421 0.89226 0.90411 0.90138 0.95858 0.91137 0.84734 0.96711 0.92325 0.95624 0.96860 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.83 37.16 0.37 -1.02 16 2 C -0.12 -1.23 5.43 -26.73 -0.14 -1.37 16 3 C 0.08 0.93 3.07 -26.15 -0.08 0.85 16 4 H 0.07 0.77 7.69 -51.93 -0.40 0.37 16 5 O -0.38 -4.69 10.85 -35.23 -0.38 -5.07 16 6 C 0.05 0.50 7.72 38.21 0.29 0.79 16 7 C -0.15 -1.69 6.52 -24.72 -0.16 -1.85 16 8 C -0.12 -1.43 2.91 -89.09 -0.26 -1.68 16 9 H 0.09 1.20 7.70 -51.93 -0.40 0.80 16 10 C 0.07 0.95 4.86 -3.83 -0.02 0.93 16 11 N -0.69 -12.21 6.50 -113.78 -0.74 -12.95 16 12 C 0.07 1.38 5.62 -3.83 -0.02 1.36 16 13 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.92 6.70 -51.93 -0.35 0.57 16 31 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.33 5.69 7.33 -39.29 -0.29 5.40 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -30.19 306.47 -8.25 -38.44 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.88 Total: -0.30 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.58 Total: -15.16 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.00 Total: -39.22 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.19 -8.25 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234162930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.469 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds