Wall clock time and date at job start Mon Mar 30 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47035 * 2 1 4 4 H 1.08998 * 109.86849 * 306.01117 * 3 2 1 5 5 O 1.43745 * 110.00083 * 67.09359 * 3 2 1 6 6 C 1.44380 * 106.97527 * 146.00889 * 5 3 2 7 7 C 1.54999 * 103.49056 * 319.94247 * 6 5 3 8 8 C 1.54103 * 109.87840 * 185.00004 * 3 2 1 9 9 H 1.08998 * 110.48732 * 357.20448 * 8 3 2 10 10 C 1.52997 * 110.48482 * 119.71971 * 8 3 2 11 11 N 1.46900 * 109.47220 * 184.99848 * 10 8 3 12 12 C 1.46894 * 111.00559 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 H 1.08996 * 109.47166 * 299.99673 * 1 2 3 23 23 H 1.08997 * 109.46805 * 59.99883 * 1 2 3 24 24 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47166 * 240.00327 * 2 1 3 26 26 H 1.09003 * 109.47458 * 119.99891 * 2 1 3 27 27 H 1.09004 * 110.61802 * 78.43982 * 6 5 3 28 28 H 1.08990 * 110.62211 * 201.27916 * 6 5 3 29 29 H 1.09000 * 110.90183 * 278.82508 * 7 6 5 30 30 H 1.08997 * 110.91120 * 155.22145 * 7 6 5 31 31 H 1.09003 * 109.46989 * 65.00066 * 10 8 3 32 32 H 1.09005 * 109.47424 * 304.99842 * 10 8 3 33 33 H 1.00905 * 110.99607 * 303.95664 * 11 10 8 34 34 H 1.09002 * 109.47104 * 59.99767 * 12 11 10 35 35 H 1.08998 * 109.46828 * 300.00600 * 12 11 10 36 36 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99953 * 13 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5953 1.9927 -0.8292 5 8 1.7082 2.0813 1.2442 6 6 2.7837 2.9952 1.5489 7 6 4.0543 2.2076 1.1393 8 6 3.5758 1.4554 -0.1263 9 1 3.9661 0.4378 -0.1382 10 6 4.0030 2.2062 -1.3891 11 7 5.4593 2.1028 -1.5513 12 6 5.9068 2.8142 -2.7561 13 6 7.4252 2.6837 -2.8911 14 6 7.8841 3.4130 -4.1274 15 1 7.1648 3.9193 -4.7540 16 6 9.2225 3.4347 -4.4581 17 7 10.0985 2.8185 -3.6949 18 14 9.7914 4.3393 -5.9902 19 1 9.4252 5.7744 -5.8824 20 1 11.2652 4.2125 -6.1213 21 1 9.1361 3.7496 -7.1853 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.6909 3.9074 0.9594 28 1 2.7999 3.2277 2.6136 29 1 4.3463 1.5067 1.9213 30 1 4.8732 2.8867 0.9019 31 1 3.7208 3.2554 -1.3009 32 1 3.5088 1.7687 -2.2566 33 1 5.9394 2.4430 -0.7316 34 1 5.6379 3.8675 -2.6770 35 1 5.4258 2.3813 -3.6332 36 1 7.6937 1.6302 -2.9703 37 1 7.9064 3.1163 -2.0139 38 1 11.0400 2.8335 -3.9277 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234162930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:27 Heat of formation + Delta-G solvation = -93.478136 kcal Electronic energy + Delta-G solvation = -15768.219728 eV Core-core repulsion = 13222.597005 eV Total energy + Delta-G solvation = -2545.622723 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83405 -37.55539 -35.25617 -34.49978 -33.40983 -30.96111 -29.35207 -26.80888 -24.92021 -24.14540 -22.53214 -21.95849 -21.16596 -18.50292 -17.45615 -17.09499 -16.62564 -16.50577 -16.18000 -15.34795 -14.89086 -14.52832 -14.44348 -14.24641 -13.84297 -13.70894 -13.65434 -13.17069 -12.83334 -12.50094 -12.42951 -12.32433 -12.11719 -11.85604 -11.73290 -11.60653 -11.56615 -11.37840 -11.11001 -10.62809 -10.56572 -9.32137 -8.20903 -6.32711 1.40446 1.43643 1.51644 2.40252 2.93921 3.12518 3.19660 3.57544 3.84750 3.95043 4.11159 4.23514 4.27750 4.36361 4.43625 4.46767 4.57444 4.59816 4.70387 4.81986 4.87249 4.92467 4.94827 5.04502 5.08689 5.12989 5.24467 5.28517 5.43167 5.45139 5.65643 5.77050 5.96529 6.11769 6.25345 6.51150 6.84312 7.36706 8.91064 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052442 B = 0.004172 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.797869 B = 6709.999765 C = 6906.527494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.082 3.918 4 H 0.067 0.933 5 O -0.389 6.389 6 C 0.045 3.955 7 C -0.150 4.150 8 C -0.112 4.112 9 H 0.090 0.910 10 C 0.070 3.930 11 N -0.695 5.695 12 C 0.083 3.917 13 C 0.031 3.969 14 C -0.548 4.548 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.267 1.267 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.338 0.662 34 H 0.019 0.981 35 H 0.058 0.942 36 H -0.005 1.005 37 H -0.008 1.008 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 -2.072 8.911 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.024 3.976 4 H 0.085 0.915 5 O -0.308 6.308 6 C -0.031 4.031 7 C -0.188 4.188 8 C -0.131 4.131 9 H 0.109 0.891 10 C -0.059 4.059 11 N -0.327 5.327 12 C -0.046 4.046 13 C -0.006 4.006 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.013 0.987 37 H 0.010 0.990 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.758 -2.760 8.733 19.097 hybrid contribution 0.851 1.340 -0.540 1.677 sum -15.907 -1.420 8.193 17.949 Atomic orbital electron populations 1.21699 0.94824 1.02077 1.01794 1.21716 0.97100 0.94037 1.02982 1.22845 0.93065 0.94765 0.86900 0.91494 1.88833 1.44429 1.57456 1.40116 1.23649 0.84925 0.92375 1.02163 1.23179 0.98453 0.99731 0.97435 1.22551 0.95111 1.01131 0.94311 0.89130 1.21983 0.88225 0.97900 0.97796 1.60518 1.05399 1.60947 1.05834 1.21784 0.96423 0.94309 0.92071 1.18921 0.91093 0.95380 0.95211 1.21594 0.93214 1.33686 1.10113 0.92137 1.25978 0.96980 0.96359 1.00369 1.70098 1.02514 1.44418 1.40091 0.85473 0.77051 0.79161 0.79180 1.19109 1.20769 1.19153 0.93053 0.92644 0.91684 0.90028 0.91413 0.92239 0.87478 0.89727 0.90504 0.95345 0.90973 0.84328 0.96326 0.92342 0.98699 0.99002 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.83 71.98 0.71 -1.78 16 2 C -0.12 -2.27 5.43 30.60 0.17 -2.10 16 3 C 0.08 1.77 3.07 30.97 0.10 1.86 16 4 H 0.07 1.44 7.69 -2.39 -0.02 1.42 16 5 O -0.39 -9.08 10.85 -148.98 -1.62 -10.69 16 6 C 0.05 0.89 7.72 72.67 0.56 1.45 16 7 C -0.15 -3.15 6.52 31.90 0.21 -2.95 16 8 C -0.11 -2.58 2.91 -9.80 -0.03 -2.61 16 9 H 0.09 2.19 7.70 -2.39 -0.02 2.17 16 10 C 0.07 1.92 4.86 86.30 0.42 2.34 16 11 N -0.70 -24.27 6.50 -513.90 -3.34 -27.62 16 12 C 0.08 3.50 5.62 86.30 0.49 3.98 16 13 C 0.03 1.68 5.23 29.85 0.16 1.84 16 14 C -0.55 -31.43 9.11 25.60 0.23 -31.19 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 16 C 0.00 0.07 5.46 84.66 0.46 0.54 16 17 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 18 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H 0.05 0.95 7.91 -2.39 -0.02 0.93 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.67 6.70 -2.39 -0.02 1.66 16 31 H 0.03 0.76 8.13 -2.39 -0.02 0.75 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.34 11.42 7.33 -89.69 -0.66 10.77 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -63.78 306.47 1.16 -62.61 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.35 Total: 14.82 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.47 Total: -28.63 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.06 Total: -84.34 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.62 Total: -10.69 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -63.78 1.16 -62.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234162930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.868 kcal (2) G-P(sol) polarization free energy of solvation -63.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds