Wall clock time and date at job start Mon Mar 30 2020 03:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08996 * 109.87569 * 305.44717 * 3 2 1 5 5 O 1.43748 * 109.87906 * 66.45433 * 3 2 1 6 6 C 1.44375 * 106.97808 * 145.93611 * 5 3 2 7 7 C 1.54998 * 103.48935 * 319.94072 * 6 5 3 8 8 C 1.54101 * 109.87945 * 184.28049 * 3 2 1 9 9 H 1.09003 * 110.48280 * 119.86816 * 8 3 2 10 10 C 1.52997 * 110.48625 * 357.22722 * 8 3 2 11 11 N 1.46899 * 109.47341 * 174.99527 * 10 8 3 12 12 C 1.46899 * 111.00401 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47242 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47212 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99874 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00084 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46874 * 59.99652 * 18 16 14 20 20 H 1.48496 * 109.47404 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46766 * 299.99816 * 18 16 14 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 27 27 H 1.08999 * 110.61951 * 78.43453 * 6 5 3 28 28 H 1.08994 * 110.62038 * 201.28006 * 6 5 3 29 29 H 1.09006 * 110.90749 * 155.22391 * 7 6 5 30 30 H 1.09007 * 110.90657 * 278.78753 * 7 6 5 31 31 H 1.09003 * 109.47361 * 294.99490 * 10 8 3 32 32 H 1.08999 * 109.47236 * 54.99592 * 10 8 3 33 33 H 1.00895 * 111.00361 * 303.95318 * 11 10 8 34 34 H 1.08997 * 109.47392 * 300.00566 * 12 11 10 35 35 H 1.09000 * 109.46642 * 59.99923 * 12 11 10 36 36 H 1.09008 * 109.47157 * 299.99952 * 13 12 11 37 37 H 1.09000 * 109.47519 * 60.00271 * 13 12 11 38 38 H 0.96997 * 120.00132 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6031 1.9900 -0.8350 5 8 1.6939 2.0833 1.2393 6 6 2.7659 2.9973 1.5551 7 6 4.0410 2.2088 1.1618 8 6 3.5772 1.4548 -0.1082 9 1 3.8922 1.9882 -1.0050 10 6 4.1251 0.0263 -0.1129 11 7 5.5766 0.0593 -0.3367 12 6 6.1387 -1.2979 -0.3470 13 6 7.6488 -1.2227 -0.5815 14 6 8.2254 -2.6150 -0.5926 15 1 7.5794 -3.4682 -0.4467 16 6 9.5776 -2.7997 -0.7881 17 7 10.3643 -1.7607 -0.9654 18 14 10.2924 -4.5255 -0.8013 19 1 9.6615 -5.3142 -1.8898 20 1 11.7580 -4.4526 -1.0289 21 1 10.0258 -5.1816 0.5040 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.6803 3.9085 0.9631 28 1 2.7696 3.2315 2.6196 29 1 4.8629 2.8873 0.9330 30 1 4.3240 1.5094 1.9485 31 1 3.9162 -0.4463 0.8468 32 1 3.6475 -0.5434 -0.9101 33 1 5.8000 0.5499 -1.1896 34 1 5.9437 -1.7792 0.6113 35 1 5.6750 -1.8771 -1.1455 36 1 7.8442 -0.7412 -1.5397 37 1 8.1122 -0.6436 0.2173 38 1 11.3156 -1.8906 -1.1033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234222812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:29 Heat of formation + Delta-G solvation = -68.771181 kcal Electronic energy + Delta-G solvation = -15881.838736 eV Core-core repulsion = 13337.287387 eV Total energy + Delta-G solvation = -2544.551349 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89847 -36.08789 -33.88166 -33.12677 -31.94544 -29.38680 -28.15044 -25.04566 -23.56134 -23.04802 -21.71896 -20.57407 -19.36968 -16.64643 -16.23571 -15.82841 -15.58032 -15.17121 -14.50276 -13.96514 -13.87133 -13.54685 -13.29559 -12.83290 -12.57371 -12.07155 -11.89697 -11.58470 -11.54899 -11.16534 -11.00371 -10.89098 -10.84798 -10.66516 -10.51142 -10.42316 -9.95189 -9.67100 -9.34865 -9.15398 -8.35043 -7.79312 -5.99769 -4.02500 3.33458 3.37767 3.40173 3.84897 4.37598 4.49477 4.63002 4.74216 5.00128 5.08349 5.12913 5.24687 5.31102 5.36148 5.49003 5.49657 5.63689 5.66010 5.81084 5.84978 5.89317 5.99869 6.14097 6.14288 6.23509 6.31234 6.33981 6.41742 6.90787 6.97717 7.47428 7.72388 7.82438 7.95677 8.08272 8.43497 9.04577 9.61314 11.11663 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045680 B = 0.004484 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.806407 B = 6242.336777 C = 6678.226029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.082 3.918 4 H 0.065 0.935 5 O -0.375 6.375 6 C 0.042 3.958 7 C -0.135 4.135 8 C -0.117 4.117 9 H 0.080 0.920 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.334 0.666 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 7.575 1.732 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.082 0.918 5 O -0.295 6.295 6 C -0.034 4.034 7 C -0.173 4.173 8 C -0.136 4.136 9 H 0.098 0.902 10 C -0.063 4.063 11 N -0.323 5.323 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.408 7.681 2.491 18.287 hybrid contribution 0.420 -1.180 -1.062 1.642 sum -15.988 6.501 1.429 17.318 Atomic orbital electron populations 1.21738 0.95696 1.01328 1.01918 1.21849 0.96247 0.95242 1.03116 1.22773 0.93751 0.93915 0.87179 0.91752 1.88854 1.43467 1.57002 1.40145 1.23590 0.86313 0.92575 1.00951 1.23058 0.97431 0.99286 0.97523 1.22568 0.94044 0.97578 0.99391 0.90168 1.22126 0.89186 0.94232 1.00785 1.60562 1.09768 1.19521 1.42407 1.22144 0.98615 0.86385 0.99023 1.19061 0.87917 0.96954 0.97243 1.21146 0.92895 0.92617 1.49492 0.92834 1.24997 0.97199 0.96818 0.95291 1.69961 1.04684 1.29427 1.49232 0.86646 0.77920 0.84786 0.78569 1.20296 1.21251 1.20205 0.93126 0.92916 0.92219 0.90845 0.90425 0.92642 0.89261 0.90098 0.90006 0.91022 0.95283 0.84861 0.92429 0.96742 0.96867 0.95681 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.82 37.16 0.37 -1.11 16 2 C -0.13 -1.39 4.46 -26.73 -0.12 -1.51 16 3 C 0.08 0.94 3.41 -26.16 -0.09 0.85 16 4 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 5 O -0.38 -4.76 10.81 -35.23 -0.38 -5.14 16 6 C 0.04 0.45 7.72 38.21 0.29 0.75 16 7 C -0.14 -1.61 6.60 -24.73 -0.16 -1.78 16 8 C -0.12 -1.41 3.21 -89.10 -0.29 -1.70 16 9 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 10 C 0.07 0.94 3.84 -3.83 -0.01 0.93 16 11 N -0.69 -12.14 6.39 -113.78 -0.73 -12.87 16 12 C 0.07 1.40 5.62 -3.83 -0.02 1.38 16 13 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 25 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 26 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.09 7.77 -51.92 -0.40 0.68 16 31 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 32 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 33 H 0.33 5.65 8.73 -39.29 -0.34 5.31 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -30.17 302.79 -8.17 -38.34 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.75 Total: 0.02 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.59 Total: -15.32 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.01 Total: -39.18 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.38 Total: -5.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.17 -8.17 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234222812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.432 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds