Wall clock time and date at job start Mon Mar 30 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47166 * 2 1 4 4 H 1.09005 * 109.46966 * 305.26773 * 3 2 1 5 5 C 1.50709 * 109.46979 * 185.27600 * 3 2 1 6 6 H 1.08000 * 119.99852 * 239.99924 * 5 3 2 7 7 C 1.37869 * 120.00091 * 59.99498 * 5 3 2 8 8 N 1.31513 * 120.00449 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00035 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46836 * 89.99949 * 9 7 5 11 11 H 1.48499 * 109.46913 * 210.00307 * 9 7 5 12 12 H 1.48500 * 109.46942 * 330.00305 * 9 7 5 13 13 N 1.46894 * 109.47421 * 65.27383 * 3 2 1 14 14 C 1.46900 * 111.00154 * 204.98267 * 13 3 2 15 15 C 1.52995 * 109.47192 * 185.32540 * 14 13 3 16 16 H 1.08997 * 110.43316 * 56.09165 * 15 14 13 17 17 C 1.54263 * 110.48989 * 293.54979 * 15 14 13 18 18 C 1.53870 * 106.60094 * 217.71199 * 17 15 14 19 19 C 1.54266 * 106.60103 * 359.97438 * 18 17 15 20 20 C 1.54891 * 110.48623 * 178.77163 * 15 14 13 21 21 H 1.09003 * 110.75582 * 38.31023 * 20 15 14 22 22 O 1.42899 * 110.75606 * 274.93883 * 20 15 14 23 23 H 1.08997 * 109.47113 * 54.21392 * 1 2 3 24 24 H 1.09001 * 109.47097 * 174.21155 * 1 2 3 25 25 H 1.09001 * 109.47098 * 294.21105 * 1 2 3 26 26 H 1.09007 * 109.46859 * 239.99630 * 2 1 3 27 27 H 1.09003 * 109.46976 * 120.00393 * 2 1 3 28 28 H 0.96998 * 120.00330 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99994 * 328.94000 * 13 3 2 30 30 H 1.09000 * 109.46944 * 305.33124 * 14 13 3 31 31 H 1.09003 * 109.46851 * 65.32568 * 14 13 3 32 32 H 1.09002 * 110.03407 * 336.99342 * 17 15 14 33 33 H 1.09007 * 110.03543 * 98.37597 * 17 15 14 34 34 H 1.08997 * 110.03546 * 119.28649 * 18 17 15 35 35 H 1.09001 * 110.03436 * 240.66213 * 18 17 15 36 36 H 1.08993 * 110.49228 * 142.28693 * 19 18 17 37 37 H 1.09003 * 110.48944 * 264.80396 * 19 18 17 38 38 H 0.96698 * 113.99692 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6016 1.9828 -0.8391 5 6 3.5414 1.4444 -0.1307 6 1 4.1502 1.8877 0.6434 7 6 4.1377 0.8802 -1.2383 8 7 3.3964 0.3407 -2.1812 9 14 5.9988 0.8820 -1.3999 10 1 6.5503 -0.3510 -0.7829 11 1 6.3708 0.9256 -2.8369 12 1 6.5545 2.0728 -0.7083 13 7 1.6570 2.0973 1.2579 14 6 1.5779 3.5545 1.0901 15 6 1.3082 4.2101 2.4459 16 1 2.0726 3.9210 3.1671 17 6 -0.0939 3.8262 2.9620 18 6 -0.6672 5.0777 3.6495 19 6 0.4068 6.1784 3.5278 20 6 1.2508 5.7512 2.3009 21 1 0.7541 6.0336 1.3727 22 8 2.5620 6.3153 2.3674 23 1 -0.3633 0.6009 -0.8336 24 1 -0.3633 -1.0224 -0.1036 25 1 -0.3633 0.4214 0.9373 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8160 -0.0566 -2.9603 29 1 0.7869 1.7258 1.6087 30 1 2.5206 3.9256 0.6880 31 1 0.7685 3.7974 0.4016 32 1 -0.7315 3.5332 2.1279 33 1 -0.0170 3.0079 3.6782 34 1 -1.5830 5.3921 3.1492 35 1 -0.8693 4.8672 4.6998 36 1 -0.0589 7.1479 3.3510 37 1 1.0236 6.2106 4.4259 38 1 2.5806 7.2783 2.2821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251349605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:57 Heat of formation + Delta-G solvation = -74.704045 kcal Electronic energy + Delta-G solvation = -16422.042998 eV Core-core repulsion = 13877.234381 eV Total energy + Delta-G solvation = -2544.808617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.84244 -36.19265 -34.92575 -32.50445 -31.28539 -28.69156 -27.52163 -26.20780 -23.42209 -22.18814 -20.66073 -19.49053 -19.34343 -17.31103 -16.21601 -15.34201 -14.96993 -14.65979 -14.32920 -13.81554 -13.58352 -12.84258 -12.66170 -12.56816 -12.25073 -11.91078 -11.71791 -11.32470 -11.17003 -11.05137 -10.79856 -10.56243 -10.44588 -10.25719 -10.11554 -9.88989 -9.81771 -9.60753 -9.39811 -8.99525 -8.27783 -7.12623 -5.90128 -3.93559 3.37849 3.43587 3.49323 4.30582 4.51182 4.67466 4.71042 5.03015 5.33745 5.38972 5.45668 5.52550 5.59801 5.75393 5.80431 5.92393 5.99781 6.15146 6.18650 6.20413 6.23372 6.29255 6.38864 6.46766 6.74529 6.82259 6.88562 7.13815 7.26393 7.57007 7.81547 7.84343 8.00039 8.39487 8.47147 8.86079 9.15182 9.71279 11.15397 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.007300 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.160177 B = 3834.937030 C = 4674.486472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.686 5.686 14 C 0.078 3.922 15 C -0.079 4.079 16 H 0.088 0.912 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.156 4.156 20 C 0.100 3.900 21 H 0.061 0.939 22 O -0.557 6.557 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.258 0.742 29 H 0.314 0.686 30 H 0.077 0.923 31 H 0.010 0.990 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 9.101 8.346 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.317 5.317 14 C -0.052 4.052 15 C -0.097 4.097 16 H 0.107 0.893 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.194 4.194 20 C 0.040 3.960 21 H 0.079 0.921 22 O -0.361 6.361 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.097 8.379 8.473 13.869 hybrid contribution -0.090 0.634 -0.768 1.000 sum -7.187 9.013 7.705 13.865 Atomic orbital electron populations 1.21878 0.99691 0.99653 0.99472 1.21763 0.91153 1.00434 1.03046 1.19146 0.95434 0.89896 0.84442 0.98258 1.21246 0.91321 1.36017 1.04291 0.92024 1.24958 0.98095 0.95747 0.95834 1.69874 1.34648 1.39708 1.09685 0.86552 0.85905 0.78419 0.76862 1.20796 1.21482 1.19936 1.60653 1.35399 1.02254 1.33377 1.21814 1.00273 0.90018 0.93085 1.21978 0.97133 0.91362 0.99272 0.89319 1.22160 0.95989 0.97466 1.00116 1.22025 0.97848 0.95345 1.00666 1.23039 0.98150 0.98401 0.99780 1.22908 0.82632 0.94493 0.95924 0.92090 1.86606 1.28271 1.24925 1.96333 0.93965 0.94410 0.94644 0.88290 0.94052 0.93181 0.86835 0.90477 0.97147 0.91854 0.91191 0.92064 0.91887 0.92026 0.90862 0.78346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.63 37.16 0.36 -2.59 16 2 C -0.13 -3.02 5.36 -26.74 -0.14 -3.17 16 3 C 0.22 5.59 2.02 -68.87 -0.14 5.45 16 4 H 0.00 -0.01 7.86 -51.93 -0.41 -0.41 16 5 C -0.49 -13.98 8.54 -34.44 -0.29 -14.27 16 6 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -26.14 11.29 55.43 0.63 -25.51 16 9 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.69 -15.00 6.26 -107.95 -0.68 -15.68 16 14 C 0.08 1.55 4.82 -3.83 -0.02 1.53 16 15 C -0.08 -1.26 2.84 -88.96 -0.25 -1.51 16 16 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 17 C -0.12 -1.59 5.63 -25.62 -0.14 -1.74 16 18 C -0.12 -1.32 6.80 -25.62 -0.17 -1.49 16 19 C -0.16 -1.71 6.55 -25.05 -0.16 -1.88 16 20 C 0.10 1.36 3.70 -24.72 -0.09 1.27 16 21 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 22 O -0.56 -7.99 13.45 -35.23 -0.47 -8.46 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.62 6.64 -51.93 -0.34 0.28 16 26 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.31 6.21 5.92 -39.29 -0.23 5.98 16 30 H 0.08 1.75 7.91 -51.93 -0.41 1.34 16 31 H 0.01 0.20 8.05 -51.93 -0.42 -0.22 16 32 H 0.06 0.85 7.77 -51.93 -0.40 0.45 16 33 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.37 3.43 9.12 45.56 0.42 3.85 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -30.39 299.74 -8.07 -38.46 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.88 Total: 6.55 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.16 Total: -16.97 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.05 Total: -41.19 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.47 Total: -8.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.39 -8.07 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251349605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.247 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds