Wall clock time and date at job start Mon Mar 30 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47166 * 2 1 4 4 H 1.09005 * 109.46966 * 305.26773 * 3 2 1 5 5 C 1.50709 * 109.46979 * 185.27600 * 3 2 1 6 6 H 1.08000 * 119.99852 * 239.99924 * 5 3 2 7 7 C 1.37869 * 120.00091 * 59.99498 * 5 3 2 8 8 N 1.31513 * 120.00449 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00035 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46836 * 89.99949 * 9 7 5 11 11 H 1.48499 * 109.46913 * 210.00307 * 9 7 5 12 12 H 1.48500 * 109.46942 * 330.00305 * 9 7 5 13 13 N 1.46894 * 109.47421 * 65.27383 * 3 2 1 14 14 C 1.46900 * 111.00154 * 204.98267 * 13 3 2 15 15 C 1.52995 * 109.47192 * 185.32540 * 14 13 3 16 16 H 1.08997 * 110.43316 * 56.09165 * 15 14 13 17 17 C 1.54263 * 110.48989 * 293.54979 * 15 14 13 18 18 C 1.53870 * 106.60094 * 217.71199 * 17 15 14 19 19 C 1.54266 * 106.60103 * 359.97438 * 18 17 15 20 20 C 1.54891 * 110.48623 * 178.77163 * 15 14 13 21 21 H 1.09003 * 110.75582 * 38.31023 * 20 15 14 22 22 O 1.42899 * 110.75606 * 274.93883 * 20 15 14 23 23 H 1.08997 * 109.47113 * 54.21392 * 1 2 3 24 24 H 1.09001 * 109.47097 * 174.21155 * 1 2 3 25 25 H 1.09001 * 109.47098 * 294.21105 * 1 2 3 26 26 H 1.09007 * 109.46859 * 239.99630 * 2 1 3 27 27 H 1.09003 * 109.46976 * 120.00393 * 2 1 3 28 28 H 0.96998 * 120.00330 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99994 * 328.94000 * 13 3 2 30 30 H 1.09000 * 109.46944 * 305.33124 * 14 13 3 31 31 H 1.09003 * 109.46851 * 65.32568 * 14 13 3 32 32 H 1.09002 * 110.03407 * 336.99342 * 17 15 14 33 33 H 1.09007 * 110.03543 * 98.37597 * 17 15 14 34 34 H 1.08997 * 110.03546 * 119.28649 * 18 17 15 35 35 H 1.09001 * 110.03436 * 240.66213 * 18 17 15 36 36 H 1.08993 * 110.49228 * 142.28693 * 19 18 17 37 37 H 1.09003 * 110.48944 * 264.80396 * 19 18 17 38 38 H 0.96698 * 113.99692 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6016 1.9828 -0.8391 5 6 3.5414 1.4444 -0.1307 6 1 4.1502 1.8877 0.6434 7 6 4.1377 0.8802 -1.2383 8 7 3.3964 0.3407 -2.1812 9 14 5.9988 0.8820 -1.3999 10 1 6.5503 -0.3510 -0.7829 11 1 6.3708 0.9256 -2.8369 12 1 6.5545 2.0728 -0.7083 13 7 1.6570 2.0973 1.2579 14 6 1.5779 3.5545 1.0901 15 6 1.3082 4.2101 2.4459 16 1 2.0726 3.9210 3.1671 17 6 -0.0939 3.8262 2.9620 18 6 -0.6672 5.0777 3.6495 19 6 0.4068 6.1784 3.5278 20 6 1.2508 5.7512 2.3009 21 1 0.7541 6.0336 1.3727 22 8 2.5620 6.3153 2.3674 23 1 -0.3633 0.6009 -0.8336 24 1 -0.3633 -1.0224 -0.1036 25 1 -0.3633 0.4214 0.9373 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8160 -0.0566 -2.9603 29 1 0.7869 1.7258 1.6087 30 1 2.5206 3.9256 0.6880 31 1 0.7685 3.7974 0.4016 32 1 -0.7315 3.5332 2.1279 33 1 -0.0170 3.0079 3.6782 34 1 -1.5830 5.3921 3.1492 35 1 -0.8693 4.8672 4.6998 36 1 -0.0589 7.1479 3.3510 37 1 1.0236 6.2106 4.4259 38 1 2.5806 7.2783 2.2821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251349605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:57 Heat of formation + Delta-G solvation = -96.717147 kcal Electronic energy + Delta-G solvation = -16422.997557 eV Core-core repulsion = 13877.234381 eV Total energy + Delta-G solvation = -2545.763177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00689 -37.95964 -36.10927 -34.41327 -33.06477 -30.16711 -28.54160 -28.15583 -25.14849 -23.87537 -21.79588 -21.22405 -20.64905 -18.48271 -18.30897 -16.85108 -16.64440 -16.06738 -15.71733 -15.53653 -14.72182 -14.64380 -14.21124 -13.95313 -13.58916 -13.44185 -13.16023 -13.03050 -12.86796 -12.54793 -12.48500 -12.10408 -12.02062 -11.79627 -11.55759 -11.38812 -11.30361 -11.16815 -11.01187 -10.74923 -10.43985 -9.00259 -8.08368 -6.20382 1.39390 1.39713 1.51116 2.42829 3.15733 3.29459 3.52300 3.67399 3.99095 4.03905 4.35184 4.41593 4.49258 4.50525 4.56503 4.58289 4.68894 4.72054 4.78314 4.92309 5.02343 5.08195 5.13491 5.21120 5.25024 5.28626 5.36508 5.42450 5.49721 5.60045 5.73962 5.89165 6.35471 6.50334 6.93118 6.97523 7.03647 7.48699 8.94883 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.007300 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.160177 B = 3834.937030 C = 4674.486472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.224 3.776 4 H -0.034 1.034 5 C -0.514 4.514 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.276 1.276 13 N -0.686 5.686 14 C 0.084 3.916 15 C -0.078 4.078 16 H 0.065 0.935 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.145 4.145 20 C 0.098 3.902 21 H 0.065 0.935 22 O -0.583 6.583 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.037 0.963 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 9.822 9.471 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.115 3.885 4 H -0.017 1.017 5 C -0.553 4.553 6 H 0.062 0.938 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.201 1.201 13 N -0.318 5.318 14 C -0.046 4.046 15 C -0.097 4.097 16 H 0.083 0.917 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.183 4.183 20 C 0.039 3.961 21 H 0.083 0.917 22 O -0.391 6.391 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.225 9.117 9.611 15.593 hybrid contribution 0.282 0.433 -1.138 1.250 sum -7.943 9.551 8.473 15.037 Atomic orbital electron populations 1.21744 0.96049 1.01252 1.00532 1.21585 0.94429 0.98711 1.01214 1.18937 0.93922 0.90831 0.84774 1.01655 1.21475 0.92988 1.36508 1.04321 0.93806 1.25675 1.02424 0.95279 0.95454 1.69992 1.36239 1.39818 1.09926 0.85601 0.80716 0.78437 0.77135 1.19912 1.20540 1.20088 1.60536 1.36454 1.03447 1.31408 1.21743 0.98324 0.88869 0.95630 1.21907 0.98403 0.93353 0.96084 0.91678 1.22129 0.93982 0.99019 1.00289 1.22027 0.98153 0.93699 1.01459 1.22960 0.97602 0.99698 0.98003 1.22923 0.82898 0.92608 0.97709 0.91663 1.86549 1.28990 1.27085 1.96475 0.94503 0.92208 0.92262 0.91379 0.94495 0.92976 0.85197 0.94410 0.96733 0.91908 0.91073 0.90396 0.90385 0.89409 0.91055 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.63 71.98 0.69 -4.58 16 2 C -0.12 -5.88 5.36 30.59 0.16 -5.72 16 3 C 0.22 11.81 2.02 44.17 0.09 11.90 16 4 H -0.03 -1.99 7.86 -2.38 -0.02 -2.01 16 5 C -0.51 -30.33 8.54 25.60 0.22 -30.11 16 6 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.56 5.29 84.65 0.45 1.01 16 8 N -0.92 -54.49 11.29 21.44 0.24 -54.25 16 9 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.69 -30.58 6.26 -495.45 -3.10 -33.68 16 14 C 0.08 3.42 4.82 86.30 0.42 3.84 16 15 C -0.08 -2.50 2.84 -9.72 -0.03 -2.53 16 16 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.12 -2.88 5.63 31.32 0.18 -2.70 16 18 C -0.12 -2.13 6.80 31.32 0.21 -1.92 16 19 C -0.14 -2.75 6.55 31.68 0.21 -2.55 16 20 C 0.10 2.55 3.70 31.90 0.12 2.67 16 21 H 0.07 1.64 8.06 -2.39 -0.02 1.62 16 22 O -0.58 -16.41 13.45 -148.98 -2.00 -18.42 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 1.96 6.64 -2.39 -0.02 1.94 16 26 H 0.07 3.75 5.95 -2.38 -0.01 3.74 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.33 12.83 5.92 -89.69 -0.53 12.30 16 30 H 0.04 1.80 7.91 -2.39 -0.02 1.79 16 31 H 0.01 0.58 8.05 -2.39 -0.02 0.56 16 32 H 0.06 1.56 7.77 -2.39 -0.02 1.54 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.39 6.78 9.12 -74.06 -0.68 6.11 16 Total: -1.00 -67.21 299.74 -0.30 -67.50 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.18 Total: 21.46 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 2.72 Total: -30.69 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -2.86 Total: -87.93 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -2.00 Total: -18.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.21 -0.30 -67.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251349605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.215 kcal (2) G-P(sol) polarization free energy of solvation -67.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds