Wall clock time and date at job start Mon Mar 30 2020 03:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47102 * 2 1 4 4 H 1.09001 * 109.46967 * 301.29552 * 3 2 1 5 5 C 1.50699 * 109.46920 * 181.29528 * 3 2 1 6 6 H 1.07996 * 119.99958 * 244.83331 * 5 3 2 7 7 C 1.37884 * 120.00186 * 64.83699 * 5 3 2 8 8 N 1.31520 * 119.99455 * 9.99335 * 7 5 3 9 9 Si 1.86791 * 120.00101 * 189.99557 * 7 5 3 10 10 H 1.48506 * 109.47449 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47116 * 239.99746 * 9 7 5 12 12 H 1.48500 * 109.47327 * 119.99846 * 9 7 5 13 13 N 1.46895 * 109.46948 * 61.29546 * 3 2 1 14 14 C 1.46898 * 110.99832 * 185.76634 * 13 3 2 15 15 C 1.46905 * 111.00192 * 61.81297 * 13 3 2 16 16 H 1.09003 * 110.43298 * 326.35152 * 15 13 3 17 17 C 1.54813 * 110.48683 * 89.03443 * 15 13 3 18 18 C 1.54992 * 102.09196 * 139.56023 * 17 15 13 19 19 O 1.44380 * 103.48789 * 322.97473 * 18 17 15 20 20 C 1.43738 * 106.97392 * 40.06483 * 19 18 17 21 21 H 1.09005 * 110.00706 * 92.98216 * 20 19 18 22 22 C 1.53008 * 109.87642 * 214.05726 * 20 19 18 23 23 H 1.09004 * 109.47397 * 304.43211 * 1 2 3 24 24 H 1.09005 * 109.47120 * 64.42670 * 1 2 3 25 25 H 1.09002 * 109.47285 * 184.42364 * 1 2 3 26 26 H 1.09001 * 109.47167 * 240.00294 * 2 1 3 27 27 H 1.09001 * 109.47163 * 119.99793 * 2 1 3 28 28 H 0.96994 * 120.00083 * 0.06444 * 8 7 5 29 29 H 1.08995 * 109.47510 * 72.08890 * 14 13 3 30 30 H 1.09003 * 109.47455 * 192.08580 * 14 13 3 31 31 H 1.08999 * 109.47130 * 312.08524 * 14 13 3 32 32 H 1.09006 * 110.90939 * 257.75984 * 17 15 13 33 33 H 1.08999 * 110.90854 * 21.36101 * 17 15 13 34 34 H 1.09005 * 110.61480 * 204.47707 * 18 17 15 35 35 H 1.08996 * 110.75428 * 81.54617 * 18 17 15 36 36 H 1.09003 * 109.46748 * 170.08334 * 22 20 19 37 37 H 1.08999 * 109.47197 * 290.08776 * 22 20 19 38 38 H 1.09000 * 109.46848 * 50.08942 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6577 1.9630 -0.8782 5 6 3.5466 1.4426 -0.0321 6 1 4.1045 1.8340 0.8056 7 6 4.2128 0.9431 -1.1311 8 7 3.5466 0.6497 -2.2265 9 14 6.0613 0.6831 -1.0642 10 1 6.5702 1.0879 0.2710 11 1 6.7153 1.5062 -2.1131 12 1 6.3682 -0.7510 -1.2974 13 7 1.5760 2.1259 1.2148 14 6 1.9305 3.5511 1.1850 15 6 2.1080 1.4761 2.4201 16 1 2.1985 0.4011 2.2644 17 6 3.4768 2.0878 2.8061 18 6 3.3728 2.1677 4.3504 19 8 1.9913 2.5208 4.5771 20 6 1.2066 1.7713 3.6345 21 1 0.8746 0.8362 4.0857 22 6 -0.0053 2.5955 3.1948 23 1 -0.3634 0.5811 0.8476 24 1 -0.3633 0.4436 -0.9270 25 1 -0.3634 -1.0246 0.0793 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5869 0.7857 -2.2615 29 1 1.3043 4.0663 0.4567 30 1 1.7723 3.9857 2.1720 31 1 2.9782 3.6591 0.9042 32 1 4.2944 1.4329 2.5046 33 1 3.5954 3.0807 2.3723 34 1 4.0354 2.9406 4.7402 35 1 3.6019 1.2032 4.8034 36 1 -0.4962 2.1009 2.3566 37 1 -0.7055 2.6836 4.0255 38 1 0.3226 3.5890 2.8890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251366102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:23 Heat of formation + Delta-G solvation = -32.318210 kcal Electronic energy + Delta-G solvation = -17661.198531 eV Core-core repulsion = 15118.227902 eV Total energy + Delta-G solvation = -2542.970629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78862 -36.67048 -33.23111 -31.47542 -31.00705 -29.79465 -26.70566 -25.70532 -24.05886 -22.47324 -21.42032 -20.58414 -18.48868 -16.80007 -16.50198 -15.38258 -14.97821 -14.30331 -14.05363 -13.81802 -13.56768 -12.84050 -12.50023 -12.23477 -12.07261 -11.88785 -11.75445 -11.11745 -11.04155 -10.92193 -10.78597 -10.63194 -10.42181 -10.25217 -10.21953 -9.95721 -9.77693 -9.52362 -9.19948 -8.84578 -8.31493 -7.14547 -6.35057 -4.11345 3.38034 3.40119 3.52172 4.32478 4.47262 4.84917 5.27092 5.30609 5.39112 5.50890 5.62852 5.73140 5.88028 6.01521 6.05665 6.09826 6.15397 6.18519 6.28790 6.37930 6.45384 6.47886 6.56563 6.64512 6.74462 6.84239 6.87662 6.94104 7.09161 7.32812 7.35950 7.41617 7.90456 8.13115 8.25153 8.53214 8.80449 9.61136 10.97321 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.011269 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.135245 B = 2484.144738 C = 3106.348194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.198 3.802 4 H 0.031 0.969 5 C -0.634 4.634 6 H 0.067 0.933 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.062 2.938 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.517 5.517 14 C 0.025 3.975 15 C 0.068 3.932 16 H 0.091 0.909 17 C -0.179 4.179 18 C 0.043 3.957 19 O -0.385 6.385 20 C 0.074 3.926 21 H 0.058 0.942 22 C -0.134 4.134 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.273 0.727 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 1.660 8.867 9.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C 0.091 3.909 4 H 0.048 0.952 5 C -0.673 4.673 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.891 3.109 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.239 5.239 14 C -0.123 4.123 15 C -0.042 4.042 16 H 0.109 0.891 17 C -0.217 4.217 18 C -0.034 4.034 19 O -0.304 6.304 20 C 0.016 3.984 21 H 0.076 0.924 22 C -0.191 4.191 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.177 1.252 8.122 8.502 hybrid contribution -0.143 0.309 0.625 0.712 sum -2.320 1.561 8.748 9.184 Atomic orbital electron populations 1.21759 0.98086 0.99036 1.01154 1.21692 0.93087 0.99511 1.00930 1.19418 0.93796 0.90181 0.87524 0.95168 1.22881 0.92225 1.45793 1.06377 0.91506 1.25623 1.06181 0.93802 0.92231 1.70730 1.10713 1.45742 1.27220 0.83648 0.75203 0.76836 0.75170 1.21682 1.21579 1.21365 1.62531 1.57130 1.01876 1.02404 1.22419 0.99908 0.90068 0.99949 1.22885 0.90568 0.99975 0.90736 0.89075 1.23955 1.00007 1.03635 0.94106 1.23524 0.83775 0.99605 0.96520 1.88813 1.17203 1.66797 1.57601 1.22823 0.92725 0.94130 0.88702 0.92447 1.21841 0.95785 1.01232 1.00222 0.92397 0.94161 0.95201 0.91884 0.93760 0.91589 0.93150 0.92580 0.93983 0.89767 0.89455 0.90031 0.93007 0.90047 0.94489 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.83 37.15 0.37 -2.32 16 2 C -0.11 -2.50 4.95 -26.73 -0.13 -2.63 16 3 C 0.20 4.57 1.40 -68.86 -0.10 4.48 16 4 H 0.03 0.79 7.44 -51.93 -0.39 0.40 16 5 C -0.63 -16.07 6.84 -34.44 -0.24 -16.31 16 6 H 0.07 1.66 3.75 -52.49 -0.20 1.47 16 7 C 0.03 0.74 5.18 -17.81 -0.09 0.64 16 8 N -0.91 -26.01 12.97 55.43 0.72 -25.29 16 9 Si 1.06 24.35 29.91 -169.99 -5.09 19.27 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.52 -10.21 2.42 -226.47 -0.55 -10.75 16 14 C 0.02 0.47 7.22 60.06 0.43 0.91 16 15 C 0.07 1.27 2.54 -66.18 -0.17 1.10 16 16 H 0.09 1.81 5.63 -51.93 -0.29 1.52 16 17 C -0.18 -3.22 4.35 -24.72 -0.11 -3.33 16 18 C 0.04 0.67 7.72 38.21 0.29 0.96 16 19 O -0.38 -6.66 11.19 -35.23 -0.39 -7.05 16 20 C 0.07 1.25 3.83 -26.16 -0.10 1.15 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 22 C -0.13 -2.10 8.44 37.16 0.31 -1.79 16 23 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 1.55 6.43 -51.93 -0.33 1.21 16 27 H 0.04 0.96 6.02 -51.93 -0.31 0.65 16 28 H 0.27 7.79 6.15 -40.82 -0.25 7.54 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.99 5.42 -51.93 -0.28 0.70 16 31 H 0.04 0.88 5.48 -51.93 -0.28 0.59 16 32 H 0.08 1.62 7.04 -51.93 -0.37 1.26 16 33 H 0.09 1.65 4.83 -51.93 -0.25 1.40 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.31 6.58 -51.93 -0.34 0.97 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.06 5.37 -51.93 -0.28 0.78 16 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -27.06 273.78 -6.38 -33.43 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.67 Total: 3.41 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 0.47 Total: -17.14 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.17 Total: -36.04 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.39 Total: -7.05 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.09 Total: 19.27 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.06 -6.38 -33.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251366102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.115 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds