Wall clock time and date at job start Mon Mar 30 2020 03:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47102 * 2 1 4 4 H 1.09001 * 109.46967 * 301.29552 * 3 2 1 5 5 C 1.50699 * 109.46920 * 181.29528 * 3 2 1 6 6 H 1.07996 * 119.99958 * 244.83331 * 5 3 2 7 7 C 1.37884 * 120.00186 * 64.83699 * 5 3 2 8 8 N 1.31520 * 119.99455 * 9.99335 * 7 5 3 9 9 Si 1.86791 * 120.00101 * 189.99557 * 7 5 3 10 10 H 1.48506 * 109.47449 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47116 * 239.99746 * 9 7 5 12 12 H 1.48500 * 109.47327 * 119.99846 * 9 7 5 13 13 N 1.46895 * 109.46948 * 61.29546 * 3 2 1 14 14 C 1.46898 * 110.99832 * 185.76634 * 13 3 2 15 15 C 1.46905 * 111.00192 * 61.81297 * 13 3 2 16 16 H 1.09003 * 110.43298 * 326.35152 * 15 13 3 17 17 C 1.54813 * 110.48683 * 89.03443 * 15 13 3 18 18 C 1.54992 * 102.09196 * 139.56023 * 17 15 13 19 19 O 1.44380 * 103.48789 * 322.97473 * 18 17 15 20 20 C 1.43738 * 106.97392 * 40.06483 * 19 18 17 21 21 H 1.09005 * 110.00706 * 92.98216 * 20 19 18 22 22 C 1.53008 * 109.87642 * 214.05726 * 20 19 18 23 23 H 1.09004 * 109.47397 * 304.43211 * 1 2 3 24 24 H 1.09005 * 109.47120 * 64.42670 * 1 2 3 25 25 H 1.09002 * 109.47285 * 184.42364 * 1 2 3 26 26 H 1.09001 * 109.47167 * 240.00294 * 2 1 3 27 27 H 1.09001 * 109.47163 * 119.99793 * 2 1 3 28 28 H 0.96994 * 120.00083 * 0.06444 * 8 7 5 29 29 H 1.08995 * 109.47510 * 72.08890 * 14 13 3 30 30 H 1.09003 * 109.47455 * 192.08580 * 14 13 3 31 31 H 1.08999 * 109.47130 * 312.08524 * 14 13 3 32 32 H 1.09006 * 110.90939 * 257.75984 * 17 15 13 33 33 H 1.08999 * 110.90854 * 21.36101 * 17 15 13 34 34 H 1.09005 * 110.61480 * 204.47707 * 18 17 15 35 35 H 1.08996 * 110.75428 * 81.54617 * 18 17 15 36 36 H 1.09003 * 109.46748 * 170.08334 * 22 20 19 37 37 H 1.08999 * 109.47197 * 290.08776 * 22 20 19 38 38 H 1.09000 * 109.46848 * 50.08942 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6577 1.9630 -0.8782 5 6 3.5466 1.4426 -0.0321 6 1 4.1045 1.8340 0.8056 7 6 4.2128 0.9431 -1.1311 8 7 3.5466 0.6497 -2.2265 9 14 6.0613 0.6831 -1.0642 10 1 6.5702 1.0879 0.2710 11 1 6.7153 1.5062 -2.1131 12 1 6.3682 -0.7510 -1.2974 13 7 1.5760 2.1259 1.2148 14 6 1.9305 3.5511 1.1850 15 6 2.1080 1.4761 2.4201 16 1 2.1985 0.4011 2.2644 17 6 3.4768 2.0878 2.8061 18 6 3.3728 2.1677 4.3504 19 8 1.9913 2.5208 4.5771 20 6 1.2066 1.7713 3.6345 21 1 0.8746 0.8362 4.0857 22 6 -0.0053 2.5955 3.1948 23 1 -0.3634 0.5811 0.8476 24 1 -0.3633 0.4436 -0.9270 25 1 -0.3634 -1.0246 0.0793 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5869 0.7857 -2.2615 29 1 1.3043 4.0663 0.4567 30 1 1.7723 3.9857 2.1720 31 1 2.9782 3.6591 0.9042 32 1 4.2944 1.4329 2.5046 33 1 3.5954 3.0807 2.3723 34 1 4.0354 2.9406 4.7402 35 1 3.6019 1.2032 4.8034 36 1 -0.4962 2.1009 2.3566 37 1 -0.7055 2.6836 4.0255 38 1 0.3226 3.5890 2.8890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251366102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:23 Heat of formation + Delta-G solvation = -48.207139 kcal Electronic energy + Delta-G solvation = -17661.887527 eV Core-core repulsion = 15118.227902 eV Total energy + Delta-G solvation = -2543.659625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25579 -38.28424 -35.02146 -33.27013 -32.35341 -31.28275 -28.39292 -27.33177 -25.68230 -24.17477 -22.81990 -22.22940 -20.14664 -18.67461 -18.00496 -16.77643 -16.37179 -15.92263 -15.69821 -15.61327 -15.10973 -14.49408 -14.13709 -13.83873 -13.52679 -13.43523 -13.14241 -12.82070 -12.64436 -12.44265 -12.43693 -12.33128 -12.00761 -11.83216 -11.77540 -11.63115 -11.42395 -11.15921 -10.70083 -10.52886 -10.35014 -8.90267 -8.42170 -6.22496 1.50622 1.57145 1.71206 2.56973 3.02129 3.23845 3.27373 3.86922 4.03277 4.14779 4.21929 4.34246 4.44460 4.49739 4.54926 4.63544 4.72571 4.75600 4.79438 4.89054 4.97229 5.03057 5.07820 5.13938 5.19830 5.24992 5.31068 5.37340 5.52087 5.58267 5.68972 6.01264 6.03349 6.22454 6.52736 6.60671 6.69743 7.57343 8.85115 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.011269 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.135245 B = 2484.144738 C = 3106.348194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C 0.202 3.798 4 H -0.004 1.004 5 C -0.629 4.629 6 H 0.072 0.928 7 C -0.023 4.023 8 N -0.938 5.938 9 Si 1.102 2.898 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.285 1.285 13 N -0.508 5.508 14 C 0.032 3.968 15 C 0.064 3.936 16 H 0.078 0.922 17 C -0.179 4.179 18 C 0.049 3.951 19 O -0.392 6.392 20 C 0.079 3.921 21 H 0.072 0.928 22 C -0.129 4.129 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.261 0.739 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 1.778 10.917 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.014 0.986 5 C -0.668 4.668 6 H 0.090 0.910 7 C -0.223 4.223 8 N -0.576 5.576 9 Si 0.927 3.073 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.212 1.212 13 N -0.230 5.230 14 C -0.116 4.116 15 C -0.046 4.046 16 H 0.096 0.904 17 C -0.218 4.218 18 C -0.027 4.027 19 O -0.312 6.312 20 C 0.021 3.979 21 H 0.089 0.911 22 C -0.187 4.187 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.321 1.379 10.199 10.551 hybrid contribution -0.121 0.305 0.033 0.330 sum -2.442 1.684 10.232 10.654 Atomic orbital electron populations 1.21641 0.95366 1.00559 1.01341 1.21524 0.95464 0.98106 0.99366 1.19224 0.92588 0.90866 0.87852 0.98576 1.23239 0.93674 1.44029 1.05886 0.91038 1.26789 1.09470 0.93810 0.92190 1.70836 1.10131 1.48196 1.28446 0.83112 0.71402 0.76777 0.76012 1.19647 1.21597 1.21161 1.62498 1.56825 1.02036 1.01668 1.22384 0.98488 0.89723 1.01018 1.22936 0.91695 0.99032 0.90895 0.90438 1.23854 0.99050 1.02480 0.96380 1.23586 0.83431 1.01324 0.94376 1.88810 1.17870 1.67052 1.57479 1.22807 0.92468 0.94997 0.87634 0.91056 1.21790 0.95653 1.00464 1.00747 0.91326 0.94655 0.93128 0.95019 0.93617 0.92896 0.93036 0.90672 0.96135 0.91283 0.90486 0.87970 0.91405 0.90514 0.92643 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.83 71.98 0.71 -4.11 16 2 C -0.11 -4.70 4.95 30.59 0.15 -4.55 16 3 C 0.20 9.49 1.40 44.17 0.06 9.55 16 4 H 0.00 -0.19 7.44 -2.39 -0.02 -0.21 16 5 C -0.63 -32.23 6.84 25.60 0.18 -32.05 16 6 H 0.07 3.55 3.75 -2.91 -0.01 3.54 16 7 C -0.02 -1.24 5.18 84.66 0.44 -0.80 16 8 N -0.94 -55.22 12.97 21.45 0.28 -54.94 16 9 Si 1.10 49.18 29.91 68.60 2.05 51.23 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 13 N -0.51 -19.72 2.42 -870.40 -2.10 -21.82 16 14 C 0.03 1.20 7.22 127.69 0.92 2.12 16 15 C 0.06 2.29 2.54 45.90 0.12 2.40 16 16 H 0.08 2.99 5.63 -2.39 -0.01 2.98 16 17 C -0.18 -6.17 4.35 31.89 0.14 -6.03 16 18 C 0.05 1.39 7.72 72.66 0.56 1.95 16 19 O -0.39 -12.30 11.19 -148.98 -1.67 -13.96 16 20 C 0.08 2.43 3.83 30.97 0.12 2.54 16 21 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 22 C -0.13 -3.71 8.44 71.98 0.61 -3.10 16 23 H 0.07 2.35 6.55 -2.38 -0.02 2.34 16 24 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.03 1.59 6.43 -2.39 -0.02 1.57 16 27 H 0.05 1.98 6.02 -2.39 -0.01 1.96 16 28 H 0.26 15.52 6.15 -92.71 -0.57 14.95 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.52 5.42 -2.39 -0.01 2.50 16 31 H 0.02 0.85 5.48 -2.39 -0.01 0.84 16 32 H 0.07 2.58 7.04 -2.38 -0.02 2.56 16 33 H 0.08 2.82 4.83 -2.39 -0.01 2.81 16 34 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.28 6.58 -2.39 -0.02 2.26 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.74 5.37 -2.39 -0.01 1.72 16 Total: -1.00 -57.71 273.78 3.80 -53.91 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.24 Total: 17.66 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.00 Total: -32.07 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.83 Total: -76.76 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.67 Total: -13.96 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.05 Total: 51.23 kcal Total: -57.71 3.80 -53.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251366102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.704 kcal (2) G-P(sol) polarization free energy of solvation -57.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds