Wall clock time and date at job start Mon Mar 30 2020 03:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 H 1.08992 * 109.47254 * 56.41573 * 3 2 1 5 5 C 1.50703 * 109.46548 * 176.41246 * 3 2 1 6 6 H 1.08005 * 119.99924 * 120.00418 * 5 3 2 7 7 C 1.37875 * 120.00233 * 299.99422 * 5 3 2 8 8 N 1.31511 * 119.99882 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00011 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46928 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47234 * 120.00140 * 9 7 5 12 12 H 1.48502 * 109.47042 * 240.00419 * 9 7 5 13 13 N 1.46900 * 109.46984 * 296.40637 * 3 2 1 14 14 C 1.46897 * 111.00472 * 296.41875 * 13 3 2 15 15 C 1.46896 * 110.99740 * 172.45758 * 13 3 2 16 16 C 1.52994 * 109.47419 * 287.85658 * 15 13 3 17 17 H 1.08996 * 109.82835 * 61.01694 * 16 15 13 18 18 C 1.54390 * 109.90831 * 181.95149 * 16 15 13 19 19 C 1.55306 * 102.25408 * 140.91310 * 18 16 15 20 20 C 1.54945 * 100.94167 * 325.86784 * 19 18 16 21 21 O 1.43237 * 109.83384 * 300.12696 * 16 15 13 22 22 H 1.08992 * 109.47792 * 185.11133 * 1 2 3 23 23 H 1.09011 * 109.46986 * 305.11271 * 1 2 3 24 24 H 1.09000 * 109.46814 * 65.10608 * 1 2 3 25 25 H 1.08998 * 109.47236 * 239.99619 * 2 1 3 26 26 H 1.09002 * 109.46971 * 119.99361 * 2 1 3 27 27 H 0.97002 * 120.00286 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46826 * 301.65494 * 14 13 3 29 29 H 1.08996 * 109.47540 * 61.64987 * 14 13 3 30 30 H 1.08998 * 109.47225 * 181.65541 * 14 13 3 31 31 H 1.09000 * 109.47240 * 167.85520 * 15 13 3 32 32 H 1.09001 * 109.46921 * 47.85763 * 15 13 3 33 33 H 1.08998 * 110.84188 * 259.10715 * 18 16 15 34 34 H 1.09003 * 110.84608 * 22.71849 * 18 16 15 35 35 H 1.09000 * 111.12095 * 83.78651 * 19 18 16 36 36 H 1.09000 * 111.12289 * 207.90499 * 19 18 16 37 37 H 1.09004 * 110.30886 * 277.53138 * 20 19 18 38 38 H 1.08995 * 110.30771 * 155.36563 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6252 1.9746 0.8560 5 6 3.5444 1.4433 0.0889 6 1 4.1316 1.8944 -0.6974 7 6 4.1712 0.8685 1.1741 8 7 3.4562 0.3190 2.1314 9 14 6.0360 0.8701 1.2846 10 1 6.6020 1.5459 0.0895 11 1 6.4586 1.5956 2.5095 12 1 6.5296 -0.5292 1.3428 13 7 1.6225 2.1095 -1.2405 14 6 2.2329 1.4697 -2.4135 15 6 1.9381 3.5435 -1.1990 16 6 0.9877 4.2472 -0.2283 17 1 1.1126 3.8372 0.7738 18 6 1.2787 5.7633 -0.2138 19 6 -0.1476 6.3719 -0.1288 20 6 -0.9555 5.3454 -0.9622 21 8 -0.3665 4.0706 -0.6602 22 1 -0.3634 -1.0235 0.0915 23 1 -0.3633 0.5912 0.8407 24 1 -0.3633 0.4326 -0.9322 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8972 -0.0857 2.8947 28 1 3.3185 1.5004 -2.3203 29 1 1.9028 0.4327 -2.4747 30 1 1.9305 2.0011 -3.3158 31 1 1.8214 3.9702 -2.1952 32 1 2.9663 3.6797 -0.8637 33 1 1.8697 6.0364 0.6603 34 1 1.7778 6.0713 -1.1326 35 1 -0.4998 6.4050 0.9022 36 1 -0.1802 7.3615 -0.5845 37 1 -0.8608 5.5634 -2.0260 38 1 -2.0040 5.3579 -0.6646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251384242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:22 Heat of formation + Delta-G solvation = -49.067589 kcal Electronic energy + Delta-G solvation = -17046.595046 eV Core-core repulsion = 14502.898109 eV Total energy + Delta-G solvation = -2543.696937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09026 -36.85638 -32.78153 -31.74805 -31.21733 -29.57707 -26.74337 -25.57324 -23.74364 -22.14395 -21.20700 -20.42241 -18.71178 -16.44026 -16.30893 -15.49677 -15.15144 -14.32083 -13.90859 -13.63281 -13.16052 -13.00593 -12.70622 -12.49020 -11.78080 -11.58288 -11.36183 -11.28329 -11.08648 -10.88740 -10.79358 -10.71245 -10.52247 -10.37876 -10.37355 -9.96450 -9.56742 -9.36663 -8.98289 -8.85424 -8.29785 -6.94546 -5.93852 -4.08137 3.26043 3.34899 3.37618 4.29149 4.41274 4.79324 5.02462 5.13857 5.28512 5.35491 5.56425 5.64175 5.86311 5.93835 5.97812 6.08632 6.18088 6.23750 6.28718 6.49391 6.55754 6.59338 6.69898 6.79584 6.83123 6.87673 7.23151 7.32918 7.45881 7.61888 7.71026 7.83658 8.08608 8.24476 8.42629 8.57227 9.04088 9.58870 11.03921 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.008953 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.092420 B = 3126.693892 C = 3560.166812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.212 3.788 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.034 3.966 15 C 0.054 3.946 16 C 0.090 3.910 17 H 0.084 0.916 18 C -0.150 4.150 19 C -0.157 4.157 20 C 0.048 3.952 21 O -0.357 6.357 22 H 0.022 0.978 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.090 0.910 27 H 0.260 0.740 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 8.591 -4.643 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C 0.105 3.895 4 H 0.057 0.943 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.252 5.252 14 C -0.115 4.115 15 C -0.075 4.075 16 C 0.032 3.968 17 H 0.102 0.898 18 C -0.189 4.189 19 C -0.194 4.194 20 C -0.030 4.030 21 O -0.276 6.276 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.532 8.235 -4.528 10.905 hybrid contribution 2.167 0.268 0.234 2.196 sum -3.365 8.503 -4.295 10.103 Atomic orbital electron populations 1.21667 0.98677 0.97994 1.00845 1.21581 0.92375 0.99194 1.01738 1.19317 0.92374 0.91141 0.86623 0.94306 1.21807 0.93040 1.37512 1.05776 0.92609 1.24907 0.97706 0.95167 0.95669 1.69894 1.34682 1.38014 1.09676 0.86665 0.86492 0.77733 0.77841 1.20026 1.21085 1.21006 1.62424 1.57681 1.00696 1.04380 1.22180 0.97799 0.99137 0.92342 1.22261 0.96982 0.90872 0.97421 1.22798 0.82215 0.92962 0.98838 0.89849 1.23161 0.97072 0.95791 1.02841 1.23251 0.95770 0.99206 1.01198 1.23288 0.97415 0.84244 0.98005 1.88594 1.25559 1.26329 1.87114 0.95924 0.94190 0.93359 0.95017 0.89214 0.93012 0.95214 0.92271 0.94502 0.93087 0.93134 0.90302 0.90871 0.90695 0.90681 0.93101 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.72 37.16 0.36 -2.57 16 2 C -0.11 -2.72 5.07 -26.73 -0.14 -2.85 16 3 C 0.21 5.31 1.64 -68.86 -0.11 5.20 16 4 H 0.04 1.08 6.50 -51.93 -0.34 0.74 16 5 C -0.54 -14.52 6.87 -34.44 -0.24 -14.76 16 6 H 0.06 1.51 5.92 -52.48 -0.31 1.19 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.97 11.30 55.43 0.63 -24.34 16 9 Si 0.88 21.12 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.53 -11.69 4.05 -236.29 -0.96 -12.64 16 14 C 0.03 0.70 8.92 60.06 0.54 1.24 16 15 C 0.05 1.07 4.42 -3.83 -0.02 1.05 16 16 C 0.09 1.64 3.50 -26.01 -0.09 1.55 16 17 H 0.08 1.74 6.70 -51.93 -0.35 1.39 16 18 C -0.15 -2.12 6.55 -24.78 -0.16 -2.28 16 19 C -0.16 -1.88 7.16 -24.48 -0.18 -2.06 16 20 C 0.05 0.66 7.78 38.18 0.30 0.95 16 21 O -0.36 -6.68 10.89 -35.23 -0.38 -7.06 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.05 1.03 7.86 -51.93 -0.41 0.63 16 25 H 0.03 0.76 6.35 -51.93 -0.33 0.44 16 26 H 0.09 2.44 5.98 -51.93 -0.31 2.13 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.03 0.64 6.20 -51.93 -0.32 0.32 16 29 H 0.06 1.22 6.40 -51.93 -0.33 0.88 16 30 H 0.04 0.67 7.96 -51.93 -0.41 0.25 16 31 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 32 H 0.05 1.08 6.73 -51.93 -0.35 0.73 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 291.64 15.07 4.39 4.39 Total: -1.00 -28.63 291.64 -7.54 -36.17 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.37 Total: 0.17 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 0.17 Total: -12.78 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.33 Total: -36.98 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.38 Total: -7.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.63 -7.54 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251384242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.898 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds