Wall clock time and date at job start Mon Mar 30 2020 03:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 H 1.08992 * 109.47254 * 56.41573 * 3 2 1 5 5 C 1.50703 * 109.46548 * 176.41246 * 3 2 1 6 6 H 1.08005 * 119.99924 * 120.00418 * 5 3 2 7 7 C 1.37875 * 120.00233 * 299.99422 * 5 3 2 8 8 N 1.31511 * 119.99882 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00011 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46928 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47234 * 120.00140 * 9 7 5 12 12 H 1.48502 * 109.47042 * 240.00419 * 9 7 5 13 13 N 1.46900 * 109.46984 * 296.40637 * 3 2 1 14 14 C 1.46897 * 111.00472 * 296.41875 * 13 3 2 15 15 C 1.46896 * 110.99740 * 172.45758 * 13 3 2 16 16 C 1.52994 * 109.47419 * 287.85658 * 15 13 3 17 17 H 1.08996 * 109.82835 * 61.01694 * 16 15 13 18 18 C 1.54390 * 109.90831 * 181.95149 * 16 15 13 19 19 C 1.55306 * 102.25408 * 140.91310 * 18 16 15 20 20 C 1.54945 * 100.94167 * 325.86784 * 19 18 16 21 21 O 1.43237 * 109.83384 * 300.12696 * 16 15 13 22 22 H 1.08992 * 109.47792 * 185.11133 * 1 2 3 23 23 H 1.09011 * 109.46986 * 305.11271 * 1 2 3 24 24 H 1.09000 * 109.46814 * 65.10608 * 1 2 3 25 25 H 1.08998 * 109.47236 * 239.99619 * 2 1 3 26 26 H 1.09002 * 109.46971 * 119.99361 * 2 1 3 27 27 H 0.97002 * 120.00286 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46826 * 301.65494 * 14 13 3 29 29 H 1.08996 * 109.47540 * 61.64987 * 14 13 3 30 30 H 1.08998 * 109.47225 * 181.65541 * 14 13 3 31 31 H 1.09000 * 109.47240 * 167.85520 * 15 13 3 32 32 H 1.09001 * 109.46921 * 47.85763 * 15 13 3 33 33 H 1.08998 * 110.84188 * 259.10715 * 18 16 15 34 34 H 1.09003 * 110.84608 * 22.71849 * 18 16 15 35 35 H 1.09000 * 111.12095 * 83.78651 * 19 18 16 36 36 H 1.09000 * 111.12289 * 207.90499 * 19 18 16 37 37 H 1.09004 * 110.30886 * 277.53138 * 20 19 18 38 38 H 1.08995 * 110.30771 * 155.36563 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6252 1.9746 0.8560 5 6 3.5444 1.4433 0.0889 6 1 4.1316 1.8944 -0.6974 7 6 4.1712 0.8685 1.1741 8 7 3.4562 0.3190 2.1314 9 14 6.0360 0.8701 1.2846 10 1 6.6020 1.5459 0.0895 11 1 6.4586 1.5956 2.5095 12 1 6.5296 -0.5292 1.3428 13 7 1.6225 2.1095 -1.2405 14 6 2.2329 1.4697 -2.4135 15 6 1.9381 3.5435 -1.1990 16 6 0.9877 4.2472 -0.2283 17 1 1.1126 3.8372 0.7738 18 6 1.2787 5.7633 -0.2138 19 6 -0.1476 6.3719 -0.1288 20 6 -0.9555 5.3454 -0.9622 21 8 -0.3665 4.0706 -0.6602 22 1 -0.3634 -1.0235 0.0915 23 1 -0.3633 0.5912 0.8407 24 1 -0.3633 0.4326 -0.9322 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8972 -0.0857 2.8947 28 1 3.3185 1.5004 -2.3203 29 1 1.9028 0.4327 -2.4747 30 1 1.9305 2.0011 -3.3158 31 1 1.8214 3.9702 -2.1952 32 1 2.9663 3.6797 -0.8637 33 1 1.8697 6.0364 0.6603 34 1 1.7778 6.0713 -1.1326 35 1 -0.4998 6.4050 0.9022 36 1 -0.1802 7.3615 -0.5845 37 1 -0.8608 5.5634 -2.0260 38 1 -2.0040 5.3579 -0.6646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251384242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:22 Heat of formation + Delta-G solvation = -67.141836 kcal Electronic energy + Delta-G solvation = -17047.378804 eV Core-core repulsion = 14502.898109 eV Total energy + Delta-G solvation = -2544.480695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43924 -38.61124 -34.72969 -33.22937 -32.84486 -30.99719 -28.73381 -27.04200 -25.61265 -23.76707 -22.37787 -21.95689 -20.60260 -18.32173 -17.71153 -17.05421 -16.71969 -16.16278 -15.45587 -15.24657 -14.80361 -14.50327 -14.16893 -14.08629 -13.49577 -13.32431 -13.12885 -12.76874 -12.62841 -12.50614 -12.50202 -12.28174 -11.98447 -11.94287 -11.81225 -11.60849 -11.55757 -11.22176 -10.91813 -10.46341 -10.21249 -8.80242 -7.99290 -6.23744 1.35735 1.38704 1.48164 2.40388 3.05146 3.16555 3.57959 3.71710 3.97026 4.06673 4.30564 4.47886 4.52766 4.56846 4.71505 4.75506 4.80289 4.87224 4.91985 4.94862 4.95650 5.03144 5.07396 5.13642 5.16755 5.31693 5.36951 5.43628 5.53935 5.65273 5.82528 6.08433 6.22694 6.32456 6.47625 6.75165 6.99888 7.46863 8.94114 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.008953 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.092420 B = 3126.693892 C = 3560.166812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.533 5.533 14 C 0.037 3.963 15 C 0.055 3.945 16 C 0.091 3.909 17 H 0.044 0.956 18 C -0.146 4.146 19 C -0.145 4.145 20 C 0.038 3.962 21 O -0.388 6.388 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 9.925 -5.838 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.115 3.885 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.256 5.256 14 C -0.111 4.111 15 C -0.073 4.073 16 C 0.033 3.967 17 H 0.062 0.938 18 C -0.184 4.184 19 C -0.182 4.182 20 C -0.039 4.039 21 O -0.308 6.308 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.670 9.582 -5.737 12.525 hybrid contribution 2.146 -0.128 0.572 2.224 sum -3.524 9.454 -5.165 11.335 Atomic orbital electron populations 1.21503 0.96499 0.99206 1.00535 1.21458 0.94281 0.98578 1.00251 1.19026 0.91348 0.91163 0.86953 0.97823 1.22018 0.94065 1.37158 1.05627 0.93085 1.25625 1.01868 0.95011 0.95459 1.70023 1.36269 1.38670 1.10119 0.85688 0.81466 0.77701 0.77849 1.19569 1.20713 1.20703 1.62382 1.57707 1.01912 1.03588 1.22192 0.96717 0.99403 0.92789 1.22314 0.96388 0.89702 0.98926 1.22618 0.82338 0.95551 0.96211 0.93821 1.23140 0.98802 0.92620 1.03808 1.23235 0.93495 1.00098 1.01382 1.23584 0.98197 0.82861 0.99212 1.88543 1.25553 1.29499 1.87181 0.93733 0.95315 0.92877 0.94985 0.92030 0.92998 0.96721 0.92562 0.91590 0.90943 0.95045 0.89959 0.89349 0.90564 0.87387 0.91732 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.72 71.98 0.70 -4.53 16 2 C -0.11 -5.37 5.07 30.60 0.16 -5.21 16 3 C 0.22 11.45 1.64 44.17 0.07 11.52 16 4 H 0.00 0.23 6.50 -2.39 -0.02 0.21 16 5 C -0.55 -30.02 6.87 25.60 0.18 -29.84 16 6 H 0.05 2.79 5.92 -2.91 -0.02 2.77 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -52.72 11.30 21.45 0.24 -52.48 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.53 -23.61 4.05 -901.50 -3.65 -27.26 16 14 C 0.04 1.51 8.92 127.69 1.14 2.65 16 15 C 0.06 2.19 4.42 86.30 0.38 2.57 16 16 C 0.09 3.34 3.50 31.06 0.11 3.45 16 17 H 0.04 1.93 6.70 -2.39 -0.02 1.91 16 18 C -0.15 -3.85 6.55 31.86 0.21 -3.64 16 19 C -0.14 -3.07 7.16 32.05 0.23 -2.84 16 20 C 0.04 0.95 7.78 72.65 0.56 1.52 16 21 O -0.39 -14.27 10.89 -148.98 -1.62 -15.89 16 22 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.05 2.24 7.86 -2.39 -0.02 2.22 16 25 H 0.03 1.56 6.35 -2.39 -0.02 1.54 16 26 H 0.06 3.44 5.98 -2.39 -0.01 3.43 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.01 0.62 6.20 -2.39 -0.01 0.61 16 29 H 0.06 2.27 6.40 -2.39 -0.02 2.25 16 30 H 0.07 2.25 7.96 -2.39 -0.02 2.23 16 31 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 32 H 0.03 1.35 6.73 -2.39 -0.02 1.34 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.07 7.85 -2.39 -0.02 2.05 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.27 291.64 2.20 -60.07 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.01 Total: 12.59 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 4.18 Total: -22.81 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -3.41 Total: -79.74 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.62 Total: -15.89 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.27 2.20 -60.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251384242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.070 kcal (2) G-P(sol) polarization free energy of solvation -62.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds