Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 H 1.09005 * 109.50732 * 56.80069 * 3 2 1 5 5 C 1.53097 * 109.54404 * 296.69304 * 3 2 1 6 6 O 1.43017 * 109.26052 * 183.19197 * 5 3 2 7 7 C 1.43013 * 113.73439 * 58.66779 * 6 5 3 8 8 H 1.09008 * 109.50865 * 181.35164 * 7 6 5 9 9 C 1.52998 * 109.50674 * 61.26765 * 7 6 5 10 10 C 1.53095 * 109.26475 * 301.33048 * 7 6 5 11 11 N 1.47014 * 109.25678 * 56.84828 * 10 7 6 12 12 C 1.46901 * 111.00126 * 177.61079 * 11 10 7 13 13 H 1.09002 * 109.46852 * 177.82421 * 12 11 10 14 14 C 1.53000 * 109.47019 * 57.82766 * 12 11 10 15 15 C 1.50698 * 109.46928 * 297.82306 * 12 11 10 16 16 H 1.07995 * 119.99988 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99696 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00008 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99649 * 180.27436 * 17 15 12 20 20 H 1.48494 * 109.47493 * 269.72622 * 19 17 15 21 21 H 1.48505 * 109.46956 * 29.73241 * 19 17 15 22 22 H 1.48504 * 109.46686 * 149.72682 * 19 17 15 23 23 H 1.09005 * 109.47370 * 65.77461 * 1 2 3 24 24 H 1.09002 * 109.47133 * 185.76903 * 1 2 3 25 25 H 1.08997 * 109.47389 * 305.77207 * 1 2 3 26 26 H 1.09002 * 109.46911 * 240.00050 * 2 1 3 27 27 H 1.09001 * 109.46764 * 120.00251 * 2 1 3 28 28 H 1.08998 * 109.50678 * 303.12433 * 5 3 2 29 29 H 1.09005 * 109.50864 * 63.25853 * 5 3 2 30 30 H 1.09004 * 109.47200 * 59.99731 * 9 7 6 31 31 H 1.08999 * 109.47279 * 179.97438 * 9 7 6 32 32 H 1.08997 * 109.47491 * 299.99407 * 9 7 6 33 33 H 1.08998 * 109.50530 * 296.91877 * 10 7 6 34 34 H 1.08994 * 109.51303 * 176.78293 * 10 7 6 35 35 H 1.09007 * 109.47168 * 180.02562 * 14 12 11 36 36 H 1.09002 * 109.47026 * 299.99548 * 14 12 11 37 37 H 1.08993 * 109.47531 * 59.99662 * 14 12 11 38 38 H 0.97001 * 119.99836 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6310 1.9731 0.8598 5 6 1.5997 2.1413 -1.2890 6 8 2.1419 3.4645 -1.3171 7 6 3.5697 3.5031 -1.2460 8 1 3.9064 4.5399 -1.2482 9 6 4.1612 2.7714 -2.4525 10 6 4.0300 2.8180 0.0434 11 7 3.5083 1.4440 0.0753 12 6 3.9748 0.7313 1.2721 13 1 3.5432 -0.2694 1.2904 14 6 3.5403 1.4971 2.5234 15 6 5.4780 0.6296 1.2421 16 1 6.0315 1.0524 0.4167 17 6 6.1469 -0.0024 2.2689 18 7 5.4729 -0.5169 3.2742 19 14 8.0108 -0.1218 2.2354 20 1 8.4144 -1.3720 1.5432 21 1 8.5687 1.0479 1.5104 22 1 8.5308 -0.1362 3.6264 23 1 -0.3634 0.4217 -0.9372 24 1 -0.3633 -1.0225 0.1033 25 1 -0.3634 0.6007 0.8338 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9639 1.5805 -2.1498 29 1 0.5114 2.1932 -1.3215 30 1 3.8301 3.2573 -3.3704 31 1 5.2495 2.8016 -2.3981 32 1 3.8257 1.7344 -2.4490 33 1 3.6528 3.3707 0.9038 34 1 5.1193 2.7945 0.0742 35 1 3.8868 0.9685 3.4115 36 1 3.9719 2.4978 2.5051 37 1 2.4530 1.5707 2.5451 38 1 5.9434 -0.9618 3.9964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251665320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -46.816832 kcal Electronic energy + Delta-G solvation = -17383.593692 eV Core-core repulsion = 14839.994355 eV Total energy + Delta-G solvation = -2543.599337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58270 -36.07478 -34.00745 -32.44827 -30.77538 -28.77743 -27.06760 -25.29295 -24.98203 -23.65866 -20.93792 -20.27783 -18.29185 -16.51490 -16.10510 -15.45124 -14.78448 -14.39607 -14.21952 -13.96116 -13.38146 -12.98636 -12.74551 -12.49972 -12.12458 -11.92634 -11.57336 -11.46124 -11.07880 -10.97359 -10.83253 -10.67927 -10.59982 -10.40188 -10.32376 -10.05164 -9.96181 -9.61274 -8.88904 -8.80015 -8.34915 -7.13992 -6.01948 -4.05368 3.29829 3.36441 3.39275 4.27362 4.39645 4.83328 5.26737 5.34584 5.41159 5.50414 5.53278 5.60942 5.67917 5.76917 5.86600 5.96313 6.08794 6.19259 6.30438 6.31090 6.35596 6.51486 6.58254 6.69108 6.70806 6.79634 6.83585 6.87838 7.15232 7.47063 7.64229 7.71005 7.82492 8.12497 8.36887 8.58977 9.00168 9.59432 11.05083 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.009733 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.784863 B = 2876.074223 C = 3499.987756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.048 3.952 4 H 0.041 0.959 5 C 0.067 3.933 6 O -0.390 6.390 7 C 0.085 3.915 8 H 0.092 0.908 9 C -0.170 4.170 10 C 0.033 3.967 11 N -0.521 5.521 12 C 0.208 3.792 13 H 0.048 0.952 14 C -0.172 4.172 15 C -0.499 4.499 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.288 1.288 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.007 0.993 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 3.900 -6.983 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.062 4.062 4 H 0.059 0.941 5 C -0.010 4.010 6 O -0.309 6.309 7 C 0.027 3.973 8 H 0.110 0.890 9 C -0.227 4.227 10 C -0.095 4.095 11 N -0.246 5.246 12 C 0.102 3.898 13 H 0.065 0.935 14 C -0.231 4.231 15 C -0.538 4.538 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.200 1.200 22 H -0.214 1.214 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.026 0.974 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.085 3.718 -7.240 10.162 hybrid contribution 0.909 0.079 0.947 1.315 sum -5.176 3.798 -6.293 8.990 Atomic orbital electron populations 1.21807 0.96527 1.01242 1.01187 1.21556 0.94333 0.96191 1.03443 1.22210 0.91123 0.95998 0.96847 0.94129 1.22716 0.97497 0.83636 0.97105 1.87934 1.20774 1.27484 1.94670 1.22350 0.80493 0.99254 0.95197 0.88973 1.22222 1.01282 1.02299 0.96933 1.22605 1.01763 0.90109 0.95069 1.62581 1.05180 1.13617 1.43226 1.19377 0.95255 0.92860 0.82325 0.93470 1.22390 0.95760 1.00096 1.04883 1.21105 0.90848 1.35891 1.05921 0.92054 1.24919 0.98314 0.95569 0.95455 1.69883 1.35158 1.38062 1.10224 0.86544 0.85649 0.78429 0.77036 1.20738 1.19992 1.21405 0.93121 0.92926 0.93030 0.91583 0.90558 0.92664 0.89701 0.93515 0.91904 0.90782 0.94870 0.89107 0.89407 0.95273 0.97352 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.48 37.16 0.35 -1.66 16 2 C -0.12 -1.98 5.23 -26.74 -0.14 -2.12 16 3 C 0.05 0.87 1.74 -67.60 -0.12 0.75 16 4 H 0.04 0.81 6.58 -51.93 -0.34 0.47 16 5 C 0.07 1.09 5.53 37.21 0.21 1.30 16 6 O -0.39 -6.86 10.64 -35.23 -0.37 -7.23 16 7 C 0.08 1.43 3.92 -26.68 -0.10 1.32 16 8 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 9 C -0.17 -2.64 8.88 37.16 0.33 -2.31 16 10 C 0.03 0.66 4.31 -3.71 -0.02 0.64 16 11 N -0.52 -10.94 3.88 -219.80 -0.85 -11.79 16 12 C 0.21 5.09 2.05 -68.87 -0.14 4.95 16 13 H 0.05 1.26 5.89 -51.93 -0.31 0.95 16 14 C -0.17 -4.17 8.26 37.16 0.31 -3.87 16 15 C -0.50 -13.35 7.91 -34.44 -0.27 -13.63 16 16 H 0.06 1.64 6.84 -52.49 -0.36 1.28 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.05 0.60 6.90 -51.93 -0.36 0.24 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.47 6.08 -51.93 -0.32 1.16 16 28 H 0.06 0.88 6.49 -51.93 -0.34 0.54 16 29 H 0.08 1.20 6.83 -51.93 -0.35 0.84 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.26 6.13 -51.93 -0.32 0.94 16 33 H 0.03 0.69 6.41 -51.93 -0.33 0.36 16 34 H 0.09 1.90 6.54 -51.93 -0.34 1.56 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 36 H 0.03 0.69 6.42 -51.93 -0.33 0.36 16 37 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 280.25 15.07 4.22 4.22 Total: -1.00 -27.74 280.25 -7.11 -34.85 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.03 Total: 1.46 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 0.31 Total: -13.13 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.22 Total: -36.32 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.37 Total: -7.23 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.74 -7.11 -34.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251665320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.962 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds