Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 H 1.09005 * 109.50732 * 56.80069 * 3 2 1 5 5 C 1.53097 * 109.54404 * 296.69304 * 3 2 1 6 6 O 1.43017 * 109.26052 * 183.19197 * 5 3 2 7 7 C 1.43013 * 113.73439 * 58.66779 * 6 5 3 8 8 H 1.09008 * 109.50865 * 181.35164 * 7 6 5 9 9 C 1.52998 * 109.50674 * 61.26765 * 7 6 5 10 10 C 1.53095 * 109.26475 * 301.33048 * 7 6 5 11 11 N 1.47014 * 109.25678 * 56.84828 * 10 7 6 12 12 C 1.46901 * 111.00126 * 177.61079 * 11 10 7 13 13 H 1.09002 * 109.46852 * 177.82421 * 12 11 10 14 14 C 1.53000 * 109.47019 * 57.82766 * 12 11 10 15 15 C 1.50698 * 109.46928 * 297.82306 * 12 11 10 16 16 H 1.07995 * 119.99988 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99696 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00008 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99649 * 180.27436 * 17 15 12 20 20 H 1.48494 * 109.47493 * 269.72622 * 19 17 15 21 21 H 1.48505 * 109.46956 * 29.73241 * 19 17 15 22 22 H 1.48504 * 109.46686 * 149.72682 * 19 17 15 23 23 H 1.09005 * 109.47370 * 65.77461 * 1 2 3 24 24 H 1.09002 * 109.47133 * 185.76903 * 1 2 3 25 25 H 1.08997 * 109.47389 * 305.77207 * 1 2 3 26 26 H 1.09002 * 109.46911 * 240.00050 * 2 1 3 27 27 H 1.09001 * 109.46764 * 120.00251 * 2 1 3 28 28 H 1.08998 * 109.50678 * 303.12433 * 5 3 2 29 29 H 1.09005 * 109.50864 * 63.25853 * 5 3 2 30 30 H 1.09004 * 109.47200 * 59.99731 * 9 7 6 31 31 H 1.08999 * 109.47279 * 179.97438 * 9 7 6 32 32 H 1.08997 * 109.47491 * 299.99407 * 9 7 6 33 33 H 1.08998 * 109.50530 * 296.91877 * 10 7 6 34 34 H 1.08994 * 109.51303 * 176.78293 * 10 7 6 35 35 H 1.09007 * 109.47168 * 180.02562 * 14 12 11 36 36 H 1.09002 * 109.47026 * 299.99548 * 14 12 11 37 37 H 1.08993 * 109.47531 * 59.99662 * 14 12 11 38 38 H 0.97001 * 119.99836 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6310 1.9731 0.8598 5 6 1.5997 2.1413 -1.2890 6 8 2.1419 3.4645 -1.3171 7 6 3.5697 3.5031 -1.2460 8 1 3.9064 4.5399 -1.2482 9 6 4.1612 2.7714 -2.4525 10 6 4.0300 2.8180 0.0434 11 7 3.5083 1.4440 0.0753 12 6 3.9748 0.7313 1.2721 13 1 3.5432 -0.2694 1.2904 14 6 3.5403 1.4971 2.5234 15 6 5.4780 0.6296 1.2421 16 1 6.0315 1.0524 0.4167 17 6 6.1469 -0.0024 2.2689 18 7 5.4729 -0.5169 3.2742 19 14 8.0108 -0.1218 2.2354 20 1 8.4144 -1.3720 1.5432 21 1 8.5687 1.0479 1.5104 22 1 8.5308 -0.1362 3.6264 23 1 -0.3634 0.4217 -0.9372 24 1 -0.3633 -1.0225 0.1033 25 1 -0.3634 0.6007 0.8338 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9639 1.5805 -2.1498 29 1 0.5114 2.1932 -1.3215 30 1 3.8301 3.2573 -3.3704 31 1 5.2495 2.8016 -2.3981 32 1 3.8257 1.7344 -2.4490 33 1 3.6528 3.3707 0.9038 34 1 5.1193 2.7945 0.0742 35 1 3.8868 0.9685 3.4115 36 1 3.9719 2.4978 2.5051 37 1 2.4530 1.5707 2.5451 38 1 5.9434 -0.9618 3.9964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251665320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -64.312067 kcal Electronic energy + Delta-G solvation = -17384.352342 eV Core-core repulsion = 14839.994355 eV Total energy + Delta-G solvation = -2544.357987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07499 -37.67433 -35.54544 -34.27974 -32.24467 -30.46255 -28.46873 -27.35376 -26.53084 -25.06488 -22.54924 -21.82616 -19.83487 -18.39738 -17.63647 -17.04152 -16.52051 -15.96323 -15.78400 -15.40941 -14.86590 -14.69382 -14.28896 -13.89975 -13.67942 -13.54192 -13.04670 -12.95101 -12.74512 -12.64785 -12.58220 -12.32977 -12.06335 -11.99831 -11.97488 -11.90268 -11.49660 -11.03511 -10.82909 -10.50150 -10.26188 -8.85940 -8.10563 -6.20573 1.41662 1.42502 1.52150 2.42178 2.95006 3.18409 3.26201 3.92060 4.04164 4.14909 4.19324 4.27355 4.37818 4.50028 4.61709 4.70004 4.72005 4.75654 4.85136 4.87801 4.95449 5.00260 5.08167 5.13423 5.18043 5.20706 5.35826 5.42226 5.49345 5.55573 5.70571 5.78470 6.19890 6.28902 6.46236 6.73515 6.92508 7.48127 8.95633 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.009733 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.784863 B = 2876.074223 C = 3499.987756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.046 3.954 4 H 0.024 0.976 5 C 0.072 3.928 6 O -0.396 6.396 7 C 0.089 3.911 8 H 0.115 0.885 9 C -0.163 4.163 10 C 0.034 3.966 11 N -0.525 5.525 12 C 0.214 3.786 13 H 0.022 0.978 14 C -0.156 4.156 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.277 1.277 21 H -0.268 1.268 22 H -0.286 1.286 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 4.605 -8.604 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.063 4.063 4 H 0.042 0.958 5 C -0.005 4.005 6 O -0.315 6.315 7 C 0.031 3.969 8 H 0.133 0.867 9 C -0.220 4.220 10 C -0.094 4.094 11 N -0.249 5.249 12 C 0.107 3.893 13 H 0.040 0.960 14 C -0.216 4.216 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.193 1.193 22 H -0.212 1.212 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.502 4.432 -8.877 11.862 hybrid contribution 1.001 -0.141 1.453 1.770 sum -5.502 4.291 -7.424 10.188 Atomic orbital electron populations 1.21754 0.93450 1.02369 1.02401 1.21496 0.96980 0.94837 1.01801 1.22344 0.89172 0.97065 0.97706 0.95825 1.22804 0.99065 0.82957 0.95657 1.87935 1.20919 1.28113 1.94503 1.22403 0.80416 1.00286 0.93802 0.86696 1.22149 1.01335 1.01289 0.97245 1.22611 1.00765 0.89478 0.96567 1.62504 1.07174 1.14172 1.41050 1.19115 0.94235 0.92178 0.83804 0.96045 1.22187 0.96293 0.99337 1.03758 1.21372 0.92140 1.35718 1.05770 0.92474 1.25668 1.02538 0.95338 0.95174 1.70012 1.36693 1.38667 1.10735 0.85575 0.80591 0.78557 0.77005 1.20320 1.19272 1.21223 0.90773 0.91677 0.93131 0.91538 0.93867 0.91868 0.86887 0.91186 0.91705 0.92379 0.96422 0.90731 0.92031 0.95596 0.96237 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.48 71.98 0.68 -2.83 16 2 C -0.11 -3.77 5.23 30.59 0.16 -3.61 16 3 C 0.05 1.66 1.74 44.92 0.08 1.74 16 4 H 0.02 0.94 6.58 -2.38 -0.02 0.92 16 5 C 0.07 2.14 5.53 72.01 0.40 2.54 16 6 O -0.40 -12.87 10.64 -148.98 -1.59 -14.46 16 7 C 0.09 2.80 3.92 30.63 0.12 2.92 16 8 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 9 C -0.16 -4.68 8.88 71.98 0.64 -4.04 16 10 C 0.03 1.35 4.31 86.31 0.37 1.73 16 11 N -0.52 -22.13 3.88 -849.31 -3.29 -25.42 16 12 C 0.21 10.76 2.05 44.17 0.09 10.85 16 13 H 0.02 1.20 5.89 -2.39 -0.01 1.19 16 14 C -0.16 -7.82 8.26 71.98 0.59 -7.22 16 15 C -0.51 -27.86 7.91 25.60 0.20 -27.65 16 16 H 0.06 3.10 6.84 -2.91 -0.02 3.08 16 17 C 0.01 0.61 5.30 84.66 0.45 1.06 16 18 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 19 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H 0.07 1.50 6.90 -2.38 -0.02 1.48 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.04 1.71 6.08 -2.39 -0.01 1.70 16 28 H 0.06 1.82 6.49 -2.39 -0.02 1.81 16 29 H 0.11 2.76 6.83 -2.38 -0.02 2.74 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.86 6.13 -2.39 -0.01 1.84 16 33 H 0.02 0.74 6.41 -2.39 -0.02 0.73 16 34 H 0.07 3.15 6.54 -2.39 -0.02 3.13 16 35 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 36 H 0.02 1.26 6.42 -2.39 -0.02 1.24 16 37 H 0.02 0.88 6.60 -2.39 -0.02 0.86 16 38 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -59.66 280.25 2.21 -57.45 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.03 Total: 13.98 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.79 Total: -24.52 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -3.05 Total: -78.15 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.59 Total: -14.46 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.66 2.21 -57.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251665320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.860 kcal (2) G-P(sol) polarization free energy of solvation -59.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds