Wall clock time and date at job start Mon Mar 30 2020 03:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46747 * 2 1 4 4 H 1.08994 * 109.50822 * 56.93923 * 3 2 1 5 5 C 1.53101 * 109.50653 * 296.84927 * 3 2 1 6 6 O 1.43016 * 109.25221 * 183.26473 * 5 3 2 7 7 C 1.43013 * 113.77942 * 58.60318 * 6 5 3 8 8 H 1.09001 * 109.50804 * 61.28578 * 7 6 5 9 9 C 1.53003 * 109.50940 * 181.41776 * 7 6 5 10 10 C 1.53099 * 109.26041 * 301.35629 * 7 6 5 11 11 N 1.47008 * 109.25661 * 56.84097 * 10 7 6 12 12 C 1.46910 * 110.99924 * 177.61004 * 11 10 7 13 13 H 1.08992 * 109.46928 * 176.79174 * 12 11 10 14 14 C 1.52998 * 109.46791 * 56.79293 * 12 11 10 15 15 C 1.50702 * 109.47122 * 296.79306 * 12 11 10 16 16 H 1.07999 * 120.00157 * 0.02562 * 15 12 11 17 17 C 1.37872 * 119.99903 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99957 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99984 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47184 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47720 * 119.99883 * 19 17 15 22 22 H 1.48504 * 109.47012 * 239.99912 * 19 17 15 23 23 H 1.08998 * 109.47315 * 298.66628 * 1 2 3 24 24 H 1.08996 * 109.47119 * 178.66501 * 1 2 3 25 25 H 1.09005 * 109.47373 * 58.66695 * 1 2 3 26 26 H 1.08992 * 109.47229 * 119.99796 * 2 1 3 27 27 H 1.08999 * 109.46901 * 240.00352 * 2 1 3 28 28 H 1.09004 * 109.50603 * 303.15457 * 5 3 2 29 29 H 1.09003 * 109.50610 * 63.28532 * 5 3 2 30 30 H 1.09005 * 109.46900 * 179.78720 * 9 7 6 31 31 H 1.09005 * 109.46885 * 299.78245 * 9 7 6 32 32 H 1.08996 * 109.47274 * 59.78400 * 9 7 6 33 33 H 1.09002 * 109.50315 * 296.91208 * 10 7 6 34 34 H 1.08998 * 109.54301 * 176.80542 * 10 7 6 35 35 H 1.09001 * 109.47358 * 59.99902 * 14 12 11 36 36 H 1.08998 * 109.47055 * 180.02562 * 14 12 11 37 37 H 1.09001 * 109.47372 * 299.99821 * 14 12 11 38 38 H 0.97004 * 120.00129 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6328 1.9725 0.8610 5 6 1.5958 2.1418 -1.2876 6 8 2.1388 3.4645 -1.3173 7 6 3.5668 3.5033 -1.2495 8 1 3.9863 2.9821 -2.1100 9 6 4.0392 4.9586 -1.2525 10 6 4.0301 2.8181 0.0388 11 7 3.5083 1.4442 0.0719 12 6 3.9776 0.7314 1.2677 13 1 3.5316 -0.2627 1.2965 14 6 3.5683 1.5106 2.5192 15 6 5.4788 0.6074 1.2217 16 1 6.0293 1.0174 0.3879 17 6 6.1496 -0.0286 2.2447 18 7 5.4794 -0.5265 3.2608 19 14 8.0104 -0.1817 2.1881 20 1 8.5222 0.4566 0.9488 21 1 8.5990 0.4934 3.3726 22 1 8.3894 -1.6175 2.1976 23 1 -0.3634 0.4930 0.9017 24 1 -0.3633 -1.0273 -0.0239 25 1 -0.3634 0.5344 -0.8778 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.9574 1.5811 -2.1496 29 1 0.5074 2.1937 -1.3167 30 1 5.1274 4.9875 -1.1971 31 1 3.7091 5.4458 -2.1701 32 1 3.6176 5.4792 -0.3928 33 1 3.6547 3.3708 0.9001 34 1 5.1194 2.7947 0.0680 35 1 2.4825 1.6003 2.5524 36 1 3.9169 0.9820 3.4064 37 1 4.0143 2.5047 2.4903 38 1 5.9513 -0.9737 3.9808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251665322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:03 Heat of formation + Delta-G solvation = -49.279715 kcal Electronic energy + Delta-G solvation = -17216.481258 eV Core-core repulsion = 14672.775123 eV Total energy + Delta-G solvation = -2543.706135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42541 -36.06414 -34.10806 -32.50344 -31.16777 -28.86643 -26.74995 -25.24499 -25.13755 -23.20566 -20.93359 -20.60844 -18.59973 -16.51923 -15.91914 -15.69408 -14.61312 -14.52036 -14.16492 -13.89671 -13.38107 -13.08690 -12.65670 -12.52579 -12.15439 -12.05145 -11.73364 -11.46199 -11.07499 -10.99274 -10.79852 -10.77394 -10.64586 -10.41993 -10.33919 -10.08875 -9.97550 -9.66326 -8.88371 -8.79757 -8.35623 -7.16765 -6.02186 -4.05648 3.28610 3.36720 3.40870 4.16713 4.39409 4.79717 5.25077 5.32298 5.38413 5.44077 5.52084 5.62982 5.66273 5.78762 5.86572 5.92528 6.01477 6.11973 6.17652 6.27704 6.32168 6.40242 6.50892 6.62913 6.68389 6.76821 6.83153 6.87154 7.14678 7.45510 7.64064 7.70836 7.82545 8.12321 8.36342 8.58351 9.00101 9.59239 11.04865 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024997 B = 0.009734 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.875344 B = 2875.934826 C = 3662.103648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.047 3.953 4 H 0.041 0.959 5 C 0.071 3.929 6 O -0.392 6.392 7 C 0.085 3.915 8 H 0.060 0.940 9 C -0.141 4.141 10 C 0.034 3.966 11 N -0.527 5.527 12 C 0.207 3.793 13 H 0.048 0.952 14 C -0.172 4.172 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.007 0.993 36 H 0.088 0.912 37 H 0.029 0.971 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 4.922 -6.548 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.062 4.062 4 H 0.059 0.941 5 C -0.006 4.006 6 O -0.311 6.311 7 C 0.027 3.973 8 H 0.078 0.922 9 C -0.199 4.199 10 C -0.094 4.094 11 N -0.251 5.251 12 C 0.101 3.899 13 H 0.066 0.934 14 C -0.231 4.231 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.026 0.974 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.094 4.734 -6.809 10.291 hybrid contribution 0.859 0.015 0.944 1.277 sum -5.235 4.749 -5.865 9.184 Atomic orbital electron populations 1.21818 0.96498 1.01207 1.01284 1.21563 0.94348 0.96145 1.03489 1.22201 0.91071 0.96080 0.96857 0.94095 1.22706 0.97621 0.83221 0.97005 1.87867 1.20883 1.27552 1.94842 1.22254 0.80874 0.96147 0.98046 0.92242 1.21718 1.01046 0.94887 1.02208 1.22629 1.01662 0.89824 0.95302 1.62589 1.05214 1.13776 1.43525 1.19391 0.95358 0.92798 0.82304 0.93416 1.22389 0.95763 1.00111 1.04846 1.21144 0.91005 1.35945 1.05635 0.92018 1.24921 0.98377 0.95570 0.95430 1.69895 1.35126 1.38426 1.09889 0.86485 0.85599 0.77724 0.77859 1.19762 1.21200 1.21080 0.93042 0.92900 0.93044 0.90534 0.91544 0.93029 0.89466 0.91090 0.92371 0.92207 0.94751 0.89204 0.97380 0.89361 0.95237 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.12 -2.01 5.23 -26.73 -0.14 -2.15 16 3 C 0.05 0.88 1.76 -67.60 -0.12 0.76 16 4 H 0.04 0.82 6.61 -51.93 -0.34 0.48 16 5 C 0.07 1.18 5.93 37.21 0.22 1.40 16 6 O -0.39 -6.97 10.47 -35.23 -0.37 -7.34 16 7 C 0.08 1.45 3.43 -26.68 -0.09 1.36 16 8 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.14 -1.97 9.57 37.16 0.36 -1.62 16 10 C 0.03 0.69 4.16 -3.71 -0.02 0.68 16 11 N -0.53 -11.36 4.50 -219.79 -0.99 -12.35 16 12 C 0.21 5.15 2.07 -68.86 -0.14 5.01 16 13 H 0.05 1.28 5.84 -51.93 -0.30 0.98 16 14 C -0.17 -4.20 8.25 37.16 0.31 -3.90 16 15 C -0.50 -13.49 7.92 -34.44 -0.27 -13.76 16 16 H 0.06 1.68 6.91 -52.49 -0.36 1.32 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.62 6.52 -51.93 -0.34 0.28 16 26 H 0.08 1.49 6.07 -51.93 -0.31 1.18 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.23 6.66 -51.93 -0.35 0.89 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 34 H 0.09 1.91 6.61 -51.93 -0.34 1.56 16 35 H 0.01 0.17 6.63 -51.93 -0.34 -0.18 16 36 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 37 H 0.03 0.70 6.41 -51.93 -0.33 0.37 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 284.59 15.07 4.29 4.29 Total: -1.00 -28.24 284.59 -7.29 -35.53 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.19 Total: 0.70 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 0.37 Total: -12.41 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.36 Total: -36.97 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.37 Total: -7.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.24 -7.29 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251665322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.749 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds