Wall clock time and date at job start Mon Mar 30 2020 03:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46747 * 2 1 4 4 H 1.08994 * 109.50822 * 56.93923 * 3 2 1 5 5 C 1.53101 * 109.50653 * 296.84927 * 3 2 1 6 6 O 1.43016 * 109.25221 * 183.26473 * 5 3 2 7 7 C 1.43013 * 113.77942 * 58.60318 * 6 5 3 8 8 H 1.09001 * 109.50804 * 61.28578 * 7 6 5 9 9 C 1.53003 * 109.50940 * 181.41776 * 7 6 5 10 10 C 1.53099 * 109.26041 * 301.35629 * 7 6 5 11 11 N 1.47008 * 109.25661 * 56.84097 * 10 7 6 12 12 C 1.46910 * 110.99924 * 177.61004 * 11 10 7 13 13 H 1.08992 * 109.46928 * 176.79174 * 12 11 10 14 14 C 1.52998 * 109.46791 * 56.79293 * 12 11 10 15 15 C 1.50702 * 109.47122 * 296.79306 * 12 11 10 16 16 H 1.07999 * 120.00157 * 0.02562 * 15 12 11 17 17 C 1.37872 * 119.99903 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99957 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99984 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47184 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47720 * 119.99883 * 19 17 15 22 22 H 1.48504 * 109.47012 * 239.99912 * 19 17 15 23 23 H 1.08998 * 109.47315 * 298.66628 * 1 2 3 24 24 H 1.08996 * 109.47119 * 178.66501 * 1 2 3 25 25 H 1.09005 * 109.47373 * 58.66695 * 1 2 3 26 26 H 1.08992 * 109.47229 * 119.99796 * 2 1 3 27 27 H 1.08999 * 109.46901 * 240.00352 * 2 1 3 28 28 H 1.09004 * 109.50603 * 303.15457 * 5 3 2 29 29 H 1.09003 * 109.50610 * 63.28532 * 5 3 2 30 30 H 1.09005 * 109.46900 * 179.78720 * 9 7 6 31 31 H 1.09005 * 109.46885 * 299.78245 * 9 7 6 32 32 H 1.08996 * 109.47274 * 59.78400 * 9 7 6 33 33 H 1.09002 * 109.50315 * 296.91208 * 10 7 6 34 34 H 1.08998 * 109.54301 * 176.80542 * 10 7 6 35 35 H 1.09001 * 109.47358 * 59.99902 * 14 12 11 36 36 H 1.08998 * 109.47055 * 180.02562 * 14 12 11 37 37 H 1.09001 * 109.47372 * 299.99821 * 14 12 11 38 38 H 0.97004 * 120.00129 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6328 1.9725 0.8610 5 6 1.5958 2.1418 -1.2876 6 8 2.1388 3.4645 -1.3173 7 6 3.5668 3.5033 -1.2495 8 1 3.9863 2.9821 -2.1100 9 6 4.0392 4.9586 -1.2525 10 6 4.0301 2.8181 0.0388 11 7 3.5083 1.4442 0.0719 12 6 3.9776 0.7314 1.2677 13 1 3.5316 -0.2627 1.2965 14 6 3.5683 1.5106 2.5192 15 6 5.4788 0.6074 1.2217 16 1 6.0293 1.0174 0.3879 17 6 6.1496 -0.0286 2.2447 18 7 5.4794 -0.5265 3.2608 19 14 8.0104 -0.1817 2.1881 20 1 8.5222 0.4566 0.9488 21 1 8.5990 0.4934 3.3726 22 1 8.3894 -1.6175 2.1976 23 1 -0.3634 0.4930 0.9017 24 1 -0.3633 -1.0273 -0.0239 25 1 -0.3634 0.5344 -0.8778 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.9574 1.5811 -2.1496 29 1 0.5074 2.1937 -1.3167 30 1 5.1274 4.9875 -1.1971 31 1 3.7091 5.4458 -2.1701 32 1 3.6176 5.4792 -0.3928 33 1 3.6547 3.3708 0.9001 34 1 5.1194 2.7947 0.0680 35 1 2.4825 1.6003 2.5524 36 1 3.9169 0.9820 3.4064 37 1 4.0143 2.5047 2.4903 38 1 5.9513 -0.9737 3.9808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251665322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:03 Heat of formation + Delta-G solvation = -67.550780 kcal Electronic energy + Delta-G solvation = -17217.273551 eV Core-core repulsion = 14672.775123 eV Total energy + Delta-G solvation = -2544.498428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94755 -37.66840 -35.64522 -34.34861 -32.56727 -30.64626 -28.12127 -27.30217 -26.70740 -24.58906 -22.60148 -22.06357 -20.25325 -18.40534 -17.46559 -17.29781 -16.47653 -15.99313 -15.69500 -15.39636 -14.92488 -14.63194 -14.37961 -13.95784 -13.68063 -13.37431 -13.12520 -12.92452 -12.87924 -12.67991 -12.59904 -12.30314 -12.23199 -12.02691 -11.94368 -11.92897 -11.54462 -11.14632 -10.84053 -10.52349 -10.27751 -8.92094 -8.11910 -6.22324 1.39922 1.42103 1.53466 2.41450 2.85020 3.16409 3.21570 3.87609 4.02151 4.11779 4.19490 4.24347 4.35832 4.48117 4.60402 4.68978 4.71158 4.73941 4.82923 4.84460 4.86291 4.97423 5.05107 5.08582 5.16129 5.19369 5.29704 5.33972 5.43169 5.53386 5.68430 5.76772 6.17448 6.27269 6.44225 6.70621 6.90416 7.46506 8.94445 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024997 B = 0.009734 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.875344 B = 2875.934826 C = 3662.103648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.046 3.954 4 H 0.025 0.975 5 C 0.075 3.925 6 O -0.397 6.397 7 C 0.089 3.911 8 H 0.062 0.938 9 C -0.136 4.136 10 C 0.037 3.963 11 N -0.536 5.536 12 C 0.213 3.787 13 H 0.023 0.977 14 C -0.156 4.156 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 5.696 -7.974 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.063 4.063 4 H 0.043 0.957 5 C -0.002 4.002 6 O -0.317 6.317 7 C 0.031 3.969 8 H 0.080 0.920 9 C -0.193 4.193 10 C -0.091 4.091 11 N -0.260 5.260 12 C 0.106 3.894 13 H 0.041 0.959 14 C -0.215 4.215 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.502 5.518 -8.249 11.864 hybrid contribution 0.947 -0.243 1.387 1.697 sum -5.555 5.275 -6.862 10.284 Atomic orbital electron populations 1.21764 0.93308 1.02610 1.02301 1.21504 0.97086 0.94737 1.01815 1.22340 0.89012 0.97217 0.97757 0.95676 1.22816 0.99327 0.82554 0.95502 1.87875 1.20987 1.28175 1.94633 1.22288 0.80778 0.97848 0.96012 0.92049 1.21716 1.01789 0.92637 1.03156 1.22631 1.00650 0.89111 0.96756 1.62522 1.07385 1.14505 1.41553 1.19131 0.94331 0.92152 0.83754 0.95944 1.22183 0.96294 0.99373 1.03673 1.21391 0.92285 1.35967 1.05510 0.92630 1.25678 1.02671 0.95276 0.95103 1.70018 1.36722 1.38922 1.10397 0.85501 0.80419 0.77678 0.77995 1.19134 1.20787 1.20755 0.93133 0.91471 0.90761 0.93817 0.91589 0.92378 0.86419 0.89918 0.90366 0.92414 0.96123 0.90850 0.96254 0.91917 0.95518 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.67 71.98 0.70 -2.84 16 2 C -0.11 -3.84 5.23 30.60 0.16 -3.68 16 3 C 0.05 1.68 1.76 44.93 0.08 1.76 16 4 H 0.03 1.01 6.61 -2.39 -0.02 0.99 16 5 C 0.07 2.27 5.93 72.02 0.43 2.70 16 6 O -0.40 -13.19 10.47 -148.98 -1.56 -14.75 16 7 C 0.09 2.90 3.43 30.63 0.10 3.00 16 8 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 9 C -0.14 -3.48 9.57 71.98 0.69 -2.79 16 10 C 0.04 1.49 4.16 86.32 0.36 1.85 16 11 N -0.54 -23.29 4.50 -849.29 -3.82 -27.11 16 12 C 0.21 10.89 2.07 44.17 0.09 10.98 16 13 H 0.02 1.27 5.84 -2.39 -0.01 1.26 16 14 C -0.16 -7.84 8.25 71.98 0.59 -7.25 16 15 C -0.51 -28.28 7.92 25.60 0.20 -28.08 16 16 H 0.06 3.07 6.91 -2.91 -0.02 3.05 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -53.05 11.32 21.45 0.24 -52.81 16 19 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.52 6.52 -2.38 -0.02 1.50 16 26 H 0.04 1.75 6.07 -2.39 -0.01 1.74 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.12 2.88 6.66 -2.39 -0.02 2.86 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.02 0.88 6.39 -2.39 -0.02 0.86 16 34 H 0.07 3.15 6.61 -2.39 -0.02 3.13 16 35 H 0.02 0.88 6.63 -2.39 -0.02 0.86 16 36 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 37 H 0.03 1.30 6.41 -2.39 -0.02 1.29 16 38 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -60.79 284.59 1.76 -59.03 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.02 Total: 13.11 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.85 Total: -23.29 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.58 Total: -79.92 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.56 Total: -14.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.79 1.76 -59.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251665322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.524 kcal (2) G-P(sol) polarization free energy of solvation -60.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds