Wall clock time and date at job start Mon Mar 30 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.09003 * 109.46730 * 305.57662 * 3 2 1 5 5 C 1.50692 * 109.47116 * 185.57818 * 3 2 1 6 6 H 1.08000 * 120.00100 * 240.00055 * 5 3 2 7 7 C 1.37876 * 120.00313 * 59.99658 * 5 3 2 8 8 N 1.31516 * 120.00115 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47434 * 119.99980 * 9 7 5 12 12 H 1.48504 * 109.47317 * 240.00150 * 9 7 5 13 13 N 1.46900 * 109.47232 * 65.57342 * 3 2 1 14 14 C 1.47015 * 110.99587 * 41.22360 * 13 3 2 15 15 C 1.53099 * 109.25340 * 177.60792 * 14 13 3 16 16 H 1.09005 * 109.50822 * 296.91310 * 15 14 13 17 17 C 1.53001 * 109.50554 * 176.82942 * 15 14 13 18 18 O 1.43016 * 109.26348 * 56.85118 * 15 14 13 19 19 C 1.43016 * 113.73548 * 301.32873 * 18 15 14 20 20 C 1.47015 * 111.00099 * 277.59147 * 13 3 2 21 21 H 1.09006 * 109.50787 * 62.45478 * 20 13 3 22 22 C 1.52996 * 109.50643 * 302.32572 * 20 13 3 23 23 H 1.08998 * 109.46987 * 280.35344 * 1 2 3 24 24 H 1.08997 * 109.47240 * 40.35675 * 1 2 3 25 25 H 1.08999 * 109.46796 * 160.36068 * 1 2 3 26 26 H 1.09000 * 109.47022 * 119.99783 * 2 1 3 27 27 H 1.08999 * 109.47031 * 240.00395 * 2 1 3 28 28 H 0.96994 * 120.00026 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.50899 * 297.53877 * 14 13 3 30 30 H 1.08997 * 109.50918 * 57.67551 * 14 13 3 31 31 H 1.09002 * 109.47497 * 59.99682 * 17 15 14 32 32 H 1.09001 * 109.47428 * 179.97438 * 17 15 14 33 33 H 1.09007 * 109.47307 * 300.00023 * 17 15 14 34 34 H 1.08994 * 109.50394 * 178.60163 * 19 18 15 35 35 H 1.08999 * 109.50525 * 298.69266 * 19 18 15 36 36 H 1.09006 * 109.47063 * 67.16794 * 22 20 13 37 37 H 1.08996 * 109.47537 * 187.16597 * 22 20 13 38 38 H 1.08997 * 109.47257 * 307.16855 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 3.5406 1.4448 -0.1381 6 1 4.1532 1.8868 0.6337 7 6 4.1315 0.8826 -1.2497 8 7 3.3855 0.3448 -2.1899 9 14 5.9916 0.8848 -1.4205 10 1 6.5967 1.5451 -0.2360 11 1 6.4821 -0.5139 -1.5113 12 1 6.3750 1.6246 -2.6498 13 7 1.6633 2.0951 1.2610 14 6 1.8460 1.1844 2.4005 15 6 1.4998 1.9219 3.6968 16 1 2.1908 2.7529 3.8385 17 6 1.6118 0.9571 4.8790 18 8 0.1625 2.4219 3.6124 19 6 -0.0508 3.3126 2.5140 20 6 0.2797 2.5892 1.2057 21 1 -0.4018 1.7490 1.0721 22 6 0.1306 3.5606 0.0331 23 1 -0.3633 0.1847 1.0109 24 1 -0.3633 0.7831 -0.6654 25 1 -0.3633 -0.9679 -0.3454 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8012 -0.0504 -2.9721 29 1 1.1895 0.3218 2.2861 30 1 2.8831 0.8511 2.4374 31 1 2.6304 0.5741 4.9402 32 1 1.3656 1.4828 5.8016 33 1 0.9195 0.1271 4.7375 34 1 -1.0932 3.6308 2.5006 35 1 0.5946 4.1843 2.6217 36 1 0.2447 3.0176 -0.9052 37 1 -0.8558 4.0231 0.0675 38 1 0.8966 4.3329 0.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252447606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:08 Heat of formation + Delta-G solvation = -38.969745 kcal Electronic energy + Delta-G solvation = -17462.974316 eV Core-core repulsion = 14919.715254 eV Total energy + Delta-G solvation = -2543.259062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51667 -36.33068 -33.23932 -32.50637 -30.99932 -29.46400 -27.24572 -25.43897 -24.53181 -22.93000 -21.11332 -20.05631 -18.79028 -16.50670 -15.90676 -15.56415 -14.78569 -14.54921 -14.34346 -13.88617 -13.45068 -12.70981 -12.57731 -12.38268 -11.94243 -11.80580 -11.54409 -11.31324 -11.24617 -11.09842 -10.87806 -10.68101 -10.65626 -10.47181 -10.19039 -10.05500 -9.75335 -9.50162 -8.98487 -8.76685 -8.29884 -7.04370 -5.99795 -4.02842 3.29748 3.38017 3.42694 4.17391 4.41267 4.85336 5.28427 5.33131 5.45604 5.51483 5.64560 5.70579 5.83645 5.91276 6.05296 6.09311 6.09858 6.15230 6.18172 6.29343 6.36895 6.42438 6.47528 6.62644 6.65290 6.77235 6.91031 7.01387 7.26427 7.46930 7.63434 7.72378 7.86946 8.19909 8.39823 8.60209 9.04079 9.61829 11.06533 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.009558 C = 0.008595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.862378 B = 2928.885362 C = 3256.798543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.154 4.154 3 C 0.211 3.789 4 H 0.048 0.952 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.032 3.968 15 C 0.085 3.915 16 H 0.059 0.941 17 C -0.141 4.141 18 O -0.392 6.392 19 C 0.071 3.929 20 C 0.024 3.976 21 H 0.061 0.939 22 C -0.140 4.140 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.259 0.741 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 2.321 7.727 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.194 4.194 3 C 0.106 3.894 4 H 0.065 0.935 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.247 5.247 14 C -0.097 4.097 15 C 0.027 3.973 16 H 0.077 0.923 17 C -0.199 4.199 18 O -0.311 6.311 19 C -0.006 4.006 20 C -0.085 4.085 21 H 0.078 0.922 22 C -0.198 4.198 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.201 2.598 7.744 9.684 hybrid contribution 0.678 -0.718 -0.598 1.155 sum -4.523 1.880 7.146 8.664 Atomic orbital electron populations 1.22136 0.99594 0.99743 0.99391 1.22268 0.91622 1.02437 1.03035 1.19488 0.95605 0.88678 0.85670 0.93471 1.21176 0.91063 1.36145 1.04829 0.92076 1.24926 0.98056 0.95573 0.95844 1.69882 1.34587 1.39478 1.09517 0.86500 0.85792 0.77485 0.77976 1.19788 1.21251 1.21158 1.62610 1.18678 1.38318 1.05136 1.22683 1.02082 0.94600 0.90303 1.22238 0.83765 0.96078 0.95220 0.92282 1.21721 1.02136 0.99011 0.97009 1.87865 1.29951 1.64327 1.48972 1.22661 1.00253 0.91979 0.85666 1.22601 0.92799 0.98122 0.94955 0.92181 1.21783 1.00264 0.99414 0.98334 0.94068 0.93496 0.94821 0.94230 0.88371 0.93126 0.94207 0.89761 0.91130 0.92373 0.92227 0.89767 0.93101 0.91640 0.93476 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.12 37.16 0.30 -2.74 16 2 C -0.15 -3.61 4.72 -26.73 -0.13 -3.74 16 3 C 0.21 5.14 1.73 -68.87 -0.12 5.02 16 4 H 0.05 1.25 5.38 -51.93 -0.28 0.97 16 5 C -0.49 -13.30 8.26 -34.44 -0.28 -13.59 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.89 -25.06 11.29 55.43 0.63 -24.44 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.52 -11.07 4.39 -219.79 -0.96 -12.04 16 14 C 0.03 0.62 3.66 -3.71 -0.01 0.61 16 15 C 0.08 1.43 3.42 -26.68 -0.09 1.34 16 16 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.14 -1.94 9.57 37.16 0.36 -1.58 16 18 O -0.39 -6.88 10.47 -35.23 -0.37 -7.24 16 19 C 0.07 1.17 6.29 37.21 0.23 1.40 16 20 C 0.02 0.44 2.02 -67.60 -0.14 0.31 16 21 H 0.06 1.15 4.06 -51.93 -0.21 0.93 16 22 C -0.14 -2.42 8.77 37.16 0.33 -2.09 16 23 H 0.04 0.79 5.21 -51.93 -0.27 0.52 16 24 H 0.05 0.93 7.15 -51.93 -0.37 0.56 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.92 6.05 -51.93 -0.31 0.60 16 27 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.04 0.80 5.16 -51.93 -0.27 0.53 16 30 H 0.08 1.74 7.72 -51.93 -0.40 1.34 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.24 6.06 -51.93 -0.31 0.93 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -27.89 280.98 -7.23 -35.12 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.09 Total: 1.78 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 0.35 Total: -13.62 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.34 Total: -36.47 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.37 Total: -7.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.89 -7.23 -35.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252447606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.852 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds