Wall clock time and date at job start Mon Mar 30 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.09003 * 109.46730 * 305.57662 * 3 2 1 5 5 C 1.50692 * 109.47116 * 185.57818 * 3 2 1 6 6 H 1.08000 * 120.00100 * 240.00055 * 5 3 2 7 7 C 1.37876 * 120.00313 * 59.99658 * 5 3 2 8 8 N 1.31516 * 120.00115 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47434 * 119.99980 * 9 7 5 12 12 H 1.48504 * 109.47317 * 240.00150 * 9 7 5 13 13 N 1.46900 * 109.47232 * 65.57342 * 3 2 1 14 14 C 1.47015 * 110.99587 * 41.22360 * 13 3 2 15 15 C 1.53099 * 109.25340 * 177.60792 * 14 13 3 16 16 H 1.09005 * 109.50822 * 296.91310 * 15 14 13 17 17 C 1.53001 * 109.50554 * 176.82942 * 15 14 13 18 18 O 1.43016 * 109.26348 * 56.85118 * 15 14 13 19 19 C 1.43016 * 113.73548 * 301.32873 * 18 15 14 20 20 C 1.47015 * 111.00099 * 277.59147 * 13 3 2 21 21 H 1.09006 * 109.50787 * 62.45478 * 20 13 3 22 22 C 1.52996 * 109.50643 * 302.32572 * 20 13 3 23 23 H 1.08998 * 109.46987 * 280.35344 * 1 2 3 24 24 H 1.08997 * 109.47240 * 40.35675 * 1 2 3 25 25 H 1.08999 * 109.46796 * 160.36068 * 1 2 3 26 26 H 1.09000 * 109.47022 * 119.99783 * 2 1 3 27 27 H 1.08999 * 109.47031 * 240.00395 * 2 1 3 28 28 H 0.96994 * 120.00026 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.50899 * 297.53877 * 14 13 3 30 30 H 1.08997 * 109.50918 * 57.67551 * 14 13 3 31 31 H 1.09002 * 109.47497 * 59.99682 * 17 15 14 32 32 H 1.09001 * 109.47428 * 179.97438 * 17 15 14 33 33 H 1.09007 * 109.47307 * 300.00023 * 17 15 14 34 34 H 1.08994 * 109.50394 * 178.60163 * 19 18 15 35 35 H 1.08999 * 109.50525 * 298.69266 * 19 18 15 36 36 H 1.09006 * 109.47063 * 67.16794 * 22 20 13 37 37 H 1.08996 * 109.47537 * 187.16597 * 22 20 13 38 38 H 1.08997 * 109.47257 * 307.16855 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 3.5406 1.4448 -0.1381 6 1 4.1532 1.8868 0.6337 7 6 4.1315 0.8826 -1.2497 8 7 3.3855 0.3448 -2.1899 9 14 5.9916 0.8848 -1.4205 10 1 6.5967 1.5451 -0.2360 11 1 6.4821 -0.5139 -1.5113 12 1 6.3750 1.6246 -2.6498 13 7 1.6633 2.0951 1.2610 14 6 1.8460 1.1844 2.4005 15 6 1.4998 1.9219 3.6968 16 1 2.1908 2.7529 3.8385 17 6 1.6118 0.9571 4.8790 18 8 0.1625 2.4219 3.6124 19 6 -0.0508 3.3126 2.5140 20 6 0.2797 2.5892 1.2057 21 1 -0.4018 1.7490 1.0721 22 6 0.1306 3.5606 0.0331 23 1 -0.3633 0.1847 1.0109 24 1 -0.3633 0.7831 -0.6654 25 1 -0.3633 -0.9679 -0.3454 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8012 -0.0504 -2.9721 29 1 1.1895 0.3218 2.2861 30 1 2.8831 0.8511 2.4374 31 1 2.6304 0.5741 4.9402 32 1 1.3656 1.4828 5.8016 33 1 0.9195 0.1271 4.7375 34 1 -1.0932 3.6308 2.5006 35 1 0.5946 4.1843 2.6217 36 1 0.2447 3.0176 -0.9052 37 1 -0.8558 4.0231 0.0675 38 1 0.8966 4.3329 0.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252447606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:08 Heat of formation + Delta-G solvation = -56.931838 kcal Electronic energy + Delta-G solvation = -17463.753211 eV Core-core repulsion = 14919.715254 eV Total energy + Delta-G solvation = -2544.037956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03173 -37.91420 -34.91256 -34.13975 -32.72419 -30.94729 -29.02775 -26.92702 -26.04776 -24.73862 -22.52910 -21.72558 -20.43865 -18.43214 -17.44923 -17.09722 -16.50470 -16.15614 -15.85794 -15.42899 -15.11243 -14.43253 -14.14986 -13.72304 -13.37752 -13.24783 -13.11319 -12.99057 -12.78485 -12.60849 -12.57769 -12.46177 -12.23336 -12.06804 -11.97654 -11.80482 -11.32507 -11.18450 -10.87076 -10.42242 -10.25210 -8.72862 -8.07852 -6.17593 1.39621 1.42354 1.53392 2.43237 2.88442 3.19464 3.29362 3.94445 4.09606 4.20718 4.25208 4.29054 4.41644 4.48750 4.51669 4.66179 4.73847 4.74359 4.79383 4.85198 4.96196 5.01135 5.06621 5.10659 5.14730 5.22947 5.31018 5.40292 5.46955 5.62584 5.76402 5.83713 6.26605 6.32811 6.55105 6.76868 6.95640 7.50911 8.96923 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.009558 C = 0.008595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.862378 B = 2928.885362 C = 3256.798543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 C 0.218 3.782 4 H 0.024 0.976 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.534 5.534 14 C 0.035 3.965 15 C 0.088 3.912 16 H 0.056 0.944 17 C -0.136 4.136 18 O -0.396 6.396 19 C 0.073 3.927 20 C 0.021 3.979 21 H 0.057 0.943 22 C -0.134 4.134 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.259 0.741 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 2.774 9.021 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.187 4.187 3 C 0.111 3.889 4 H 0.041 0.959 5 C -0.548 4.548 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.259 5.259 14 C -0.093 4.093 15 C 0.030 3.970 16 H 0.074 0.926 17 C -0.193 4.193 18 O -0.315 6.315 19 C -0.003 4.003 20 C -0.088 4.088 21 H 0.075 0.925 22 C -0.192 4.192 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.858 3.057 9.052 11.207 hybrid contribution 0.861 -0.834 -1.005 1.564 sum -4.996 2.224 8.048 9.730 Atomic orbital electron populations 1.21974 0.96885 1.00480 1.00163 1.22086 0.94007 1.01439 1.01122 1.19214 0.94079 0.89009 0.86578 0.95873 1.21435 0.92693 1.36059 1.04614 0.93305 1.25614 1.02004 0.95337 0.95635 1.70004 1.36057 1.39985 1.09833 0.85576 0.81076 0.77511 0.77859 1.19490 1.20811 1.20845 1.62526 1.20939 1.38232 1.04193 1.22665 1.00823 0.94603 0.91234 1.22264 0.83629 0.96325 0.94738 0.92562 1.21714 1.02957 0.98388 0.96243 1.87874 1.30004 1.64474 1.49177 1.22769 1.02208 0.91378 0.83973 1.22731 0.90870 0.98378 0.96803 0.92544 1.21722 1.02078 0.98686 0.96665 0.92827 0.93664 0.93496 0.94646 0.91592 0.93139 0.94843 0.91664 0.90040 0.90570 0.92183 0.86580 0.92925 0.94104 0.89825 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.12 71.98 0.58 -4.87 16 2 C -0.15 -6.99 4.72 30.60 0.14 -6.85 16 3 C 0.22 10.81 1.73 44.17 0.08 10.89 16 4 H 0.02 1.27 5.38 -2.39 -0.01 1.26 16 5 C -0.51 -28.08 8.26 25.60 0.21 -27.86 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.68 5.29 84.65 0.45 1.12 16 8 N -0.92 -52.49 11.29 21.45 0.24 -52.25 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 N -0.53 -22.61 4.39 -849.28 -3.73 -26.34 16 14 C 0.04 1.37 3.66 86.31 0.32 1.68 16 15 C 0.09 2.84 3.42 30.63 0.10 2.94 16 16 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 17 C -0.14 -3.40 9.57 71.98 0.69 -2.72 16 18 O -0.40 -12.85 10.47 -148.98 -1.56 -14.41 16 19 C 0.07 2.20 6.29 72.02 0.45 2.66 16 20 C 0.02 0.73 2.02 44.93 0.09 0.82 16 21 H 0.06 2.06 4.06 -2.38 -0.01 2.05 16 22 C -0.13 -4.47 8.77 71.98 0.63 -3.84 16 23 H 0.05 1.98 5.21 -2.39 -0.01 1.96 16 24 H 0.04 1.78 7.15 -2.39 -0.02 1.76 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.03 1.67 6.05 -2.39 -0.01 1.65 16 27 H 0.07 3.58 5.94 -2.39 -0.01 3.57 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.03 1.33 5.16 -2.38 -0.01 1.32 16 30 H 0.06 2.73 7.72 -2.39 -0.02 2.72 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16 34 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.55 6.06 -2.38 -0.01 1.54 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -59.85 280.98 1.76 -58.10 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.03 Total: 14.86 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.75 Total: -26.02 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -3.48 Total: -78.59 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.56 Total: -14.41 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -59.85 1.76 -58.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252447606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.164 kcal (2) G-P(sol) polarization free energy of solvation -59.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds