Wall clock time and date at job start Mon Mar 30 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47301 * 2 1 4 4 H 1.09003 * 109.47045 * 179.47484 * 3 2 1 5 5 C 1.50699 * 109.46788 * 59.47811 * 3 2 1 6 6 H 1.07999 * 119.99821 * 239.99526 * 5 3 2 7 7 C 1.37874 * 120.00007 * 60.00226 * 5 3 2 8 8 N 1.31521 * 120.00263 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47043 * 59.99385 * 9 7 5 11 11 H 1.48501 * 109.47291 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46931 * 299.99837 * 9 7 5 13 13 N 1.46893 * 109.47363 * 299.47703 * 3 2 1 14 14 C 1.48534 * 111.00106 * 297.29802 * 13 3 2 15 15 C 1.54939 * 103.22770 * 200.27862 * 14 13 3 16 16 C 1.54595 * 102.92009 * 37.41093 * 15 14 13 17 17 H 1.09003 * 110.39365 * 97.00690 * 16 15 14 18 18 C 1.53002 * 110.30965 * 219.12651 * 16 15 14 19 19 H 1.09007 * 109.46720 * 55.71650 * 18 16 15 20 20 C 1.53004 * 109.47132 * 295.71843 * 18 16 15 21 21 O 1.42893 * 109.47156 * 175.71758 * 18 16 15 22 22 C 1.47898 * 111.00249 * 179.89868 * 13 3 2 23 23 H 1.09000 * 109.47774 * 183.74569 * 1 2 3 24 24 H 1.09004 * 109.47060 * 303.75074 * 1 2 3 25 25 H 1.09005 * 109.47554 * 63.74730 * 1 2 3 26 26 H 1.09003 * 109.46970 * 240.00121 * 2 1 3 27 27 H 1.08994 * 109.47535 * 120.00485 * 2 1 3 28 28 H 0.97004 * 119.99835 * 180.02562 * 8 7 5 29 29 H 1.08999 * 110.66345 * 318.71192 * 14 13 3 30 30 H 1.08998 * 110.66882 * 81.67416 * 14 13 3 31 31 H 1.09000 * 110.72049 * 279.05373 * 15 14 13 32 32 H 1.08996 * 110.72269 * 155.77158 * 15 14 13 33 33 H 1.08998 * 109.46742 * 299.99945 * 20 18 16 34 34 H 1.08997 * 109.47097 * 60.00063 * 20 18 16 35 35 H 1.08995 * 109.47098 * 179.97438 * 20 18 16 36 36 H 0.96701 * 114.00493 * 60.00121 * 21 18 16 37 37 H 1.09006 * 109.91585 * 26.49136 * 22 13 3 38 38 H 1.09002 * 109.91584 * 265.19794 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0094 5 6 1.5271 2.1566 1.2240 6 1 0.9071 3.0344 1.1169 7 6 1.8494 1.6893 2.4804 8 7 2.6041 0.6201 2.6108 9 14 1.2130 2.5741 3.9976 10 1 -0.2719 2.5735 3.9846 11 1 1.6972 1.8774 5.2165 12 1 1.7075 3.9743 3.9979 13 7 1.5607 2.1314 -1.2056 14 6 2.1002 1.4929 -2.4335 15 6 1.9519 2.6026 -3.5045 16 6 2.2815 3.8907 -2.7157 17 1 3.3236 4.1724 -2.8668 18 6 1.3564 5.0299 -3.1486 19 1 0.3181 4.7208 -3.0271 20 6 1.6188 5.3699 -4.6171 21 8 1.6084 6.1812 -2.3407 22 6 2.0333 3.5325 -1.2388 23 1 -0.3634 -1.0254 0.0671 24 1 -0.3633 0.5710 0.8545 25 1 -0.3634 0.4546 -0.9217 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.8305 0.2912 3.4949 29 1 3.1483 1.2255 -2.2992 30 1 1.5118 0.6153 -2.7010 31 1 0.9318 2.6352 -3.8875 32 1 2.6648 2.4537 -4.3154 33 1 2.6570 5.6788 -4.7386 34 1 1.4265 4.4917 -5.2334 35 1 0.9594 6.1812 -4.9256 36 1 2.5152 6.5121 -2.3993 37 1 2.9606 3.6250 -0.6733 38 1 1.2724 4.1910 -0.8198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252783636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:01 Heat of formation + Delta-G solvation = -61.315041 kcal Electronic energy + Delta-G solvation = -16891.655900 eV Core-core repulsion = 14347.427874 eV Total energy + Delta-G solvation = -2544.228026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01362 -36.76492 -34.22337 -31.78824 -30.70024 -28.99139 -27.90783 -25.83013 -23.46681 -22.29983 -21.12741 -19.87387 -18.88116 -16.40195 -15.93035 -15.57192 -15.11523 -14.73749 -14.05295 -13.61743 -13.25762 -12.79023 -12.55843 -12.44340 -11.98848 -11.77078 -11.65326 -11.44477 -11.13929 -10.91146 -10.83689 -10.60755 -10.50547 -10.32933 -10.14402 -9.87183 -9.68188 -9.57702 -9.25489 -8.76274 -8.37035 -7.17313 -5.95943 -3.98956 3.35900 3.39672 3.43657 4.45782 4.49371 4.85431 5.02192 5.10901 5.26883 5.35380 5.39008 5.49263 5.65400 5.82081 5.89552 5.97848 6.09419 6.26338 6.30984 6.42131 6.49629 6.57046 6.64304 6.73652 6.81160 6.89900 7.17789 7.31735 7.46125 7.68131 7.77259 7.81194 7.89154 8.18014 8.39231 8.62032 9.06694 9.64925 11.10670 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.008413 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.473206 B = 3327.509254 C = 3983.967828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.209 3.791 4 H -0.003 1.003 5 C -0.495 4.495 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.508 5.508 14 C 0.034 3.966 15 C -0.113 4.113 16 C -0.134 4.134 17 H 0.066 0.934 18 C 0.112 3.888 19 H 0.101 0.899 20 C -0.183 4.183 21 O -0.561 6.561 22 C 0.062 3.938 23 H 0.014 0.986 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.011 0.989 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.369 0.631 37 H 0.039 0.961 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 5.054 -11.633 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.102 3.898 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.233 5.233 14 C -0.095 4.095 15 C -0.152 4.152 16 C -0.153 4.153 17 H 0.085 0.915 18 C 0.053 3.947 19 H 0.119 0.881 20 C -0.241 4.241 21 O -0.366 6.366 22 C -0.066 4.066 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.216 0.784 37 H 0.058 0.942 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.107 4.817 -11.292 12.326 hybrid contribution 1.297 0.397 0.715 1.534 sum 0.190 5.213 -10.576 11.793 Atomic orbital electron populations 1.21461 0.97285 0.97468 1.01537 1.21508 0.95240 0.98104 0.99847 1.19452 0.92740 0.91190 0.86375 0.98578 1.21024 1.30905 1.11779 0.89655 0.92139 1.24899 0.95262 0.95102 0.98867 1.69877 1.37369 1.23036 1.23113 0.86642 0.79340 0.79714 0.82226 1.20235 1.21448 1.20369 1.64867 1.55214 1.00925 1.02298 1.23134 0.97623 0.96979 0.91718 1.22471 1.01159 0.94368 0.97160 1.22821 0.98884 0.95841 0.97782 0.91523 1.21983 0.99843 0.84503 0.88345 0.88146 1.22521 1.01697 1.02126 0.97748 1.86613 1.34327 1.46282 1.69362 1.22574 0.99551 0.92093 0.92376 0.96669 0.92188 0.94122 0.97026 0.89195 0.93035 0.95061 0.91038 0.91147 0.92182 0.92734 0.91548 0.92288 0.78412 0.94230 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.15 0.35 -2.37 16 2 C -0.11 -2.64 5.28 -26.73 -0.14 -2.78 16 3 C 0.21 5.28 1.43 -68.87 -0.10 5.18 16 4 H 0.00 -0.09 8.00 -51.93 -0.42 -0.51 16 5 C -0.50 -13.56 6.72 -34.44 -0.23 -13.79 16 6 H 0.06 1.69 7.25 -52.49 -0.38 1.31 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.51 -10.92 4.43 -223.89 -0.99 -11.92 16 14 C 0.03 0.61 5.53 -1.90 -0.01 0.60 16 15 C -0.11 -1.63 5.64 -24.87 -0.14 -1.77 16 16 C -0.13 -1.99 2.76 -89.26 -0.25 -2.24 16 17 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.11 1.50 2.84 -26.73 -0.08 1.42 16 19 H 0.10 1.47 8.11 -51.92 -0.42 1.05 16 20 C -0.18 -1.91 9.36 37.16 0.35 -1.56 16 21 O -0.56 -7.94 12.77 -35.23 -0.45 -8.39 16 22 C 0.06 1.23 5.14 -2.76 -0.01 1.22 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.48 7.07 -51.93 -0.37 1.11 16 25 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 26 H 0.01 0.25 6.97 -51.93 -0.36 -0.11 16 27 H 0.09 2.43 6.08 -51.93 -0.32 2.12 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 29 H 0.03 0.59 7.96 -51.93 -0.41 0.17 16 30 H 0.07 1.27 7.65 -51.93 -0.40 0.87 16 31 H 0.07 0.97 7.78 -51.93 -0.40 0.56 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.65 7.35 -51.93 -0.38 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.37 3.85 9.05 45.56 0.41 4.26 16 37 H 0.04 0.86 7.71 -51.93 -0.40 0.46 16 38 H 0.08 1.64 7.16 -51.93 -0.37 1.27 16 LS Contribution 293.82 15.07 4.43 4.43 Total: -1.00 -29.20 293.82 -7.63 -36.83 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.87 Total: 1.91 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.35 Total: -14.53 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.36 Total: -36.88 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.45 Total: -8.39 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.20 -7.63 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252783636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.489 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds