Wall clock time and date at job start Mon Mar 30 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47301 * 2 1 4 4 H 1.09003 * 109.47045 * 179.47484 * 3 2 1 5 5 C 1.50699 * 109.46788 * 59.47811 * 3 2 1 6 6 H 1.07999 * 119.99821 * 239.99526 * 5 3 2 7 7 C 1.37874 * 120.00007 * 60.00226 * 5 3 2 8 8 N 1.31521 * 120.00263 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47043 * 59.99385 * 9 7 5 11 11 H 1.48501 * 109.47291 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46931 * 299.99837 * 9 7 5 13 13 N 1.46893 * 109.47363 * 299.47703 * 3 2 1 14 14 C 1.48534 * 111.00106 * 297.29802 * 13 3 2 15 15 C 1.54939 * 103.22770 * 200.27862 * 14 13 3 16 16 C 1.54595 * 102.92009 * 37.41093 * 15 14 13 17 17 H 1.09003 * 110.39365 * 97.00690 * 16 15 14 18 18 C 1.53002 * 110.30965 * 219.12651 * 16 15 14 19 19 H 1.09007 * 109.46720 * 55.71650 * 18 16 15 20 20 C 1.53004 * 109.47132 * 295.71843 * 18 16 15 21 21 O 1.42893 * 109.47156 * 175.71758 * 18 16 15 22 22 C 1.47898 * 111.00249 * 179.89868 * 13 3 2 23 23 H 1.09000 * 109.47774 * 183.74569 * 1 2 3 24 24 H 1.09004 * 109.47060 * 303.75074 * 1 2 3 25 25 H 1.09005 * 109.47554 * 63.74730 * 1 2 3 26 26 H 1.09003 * 109.46970 * 240.00121 * 2 1 3 27 27 H 1.08994 * 109.47535 * 120.00485 * 2 1 3 28 28 H 0.97004 * 119.99835 * 180.02562 * 8 7 5 29 29 H 1.08999 * 110.66345 * 318.71192 * 14 13 3 30 30 H 1.08998 * 110.66882 * 81.67416 * 14 13 3 31 31 H 1.09000 * 110.72049 * 279.05373 * 15 14 13 32 32 H 1.08996 * 110.72269 * 155.77158 * 15 14 13 33 33 H 1.08998 * 109.46742 * 299.99945 * 20 18 16 34 34 H 1.08997 * 109.47097 * 60.00063 * 20 18 16 35 35 H 1.08995 * 109.47098 * 179.97438 * 20 18 16 36 36 H 0.96701 * 114.00493 * 60.00121 * 21 18 16 37 37 H 1.09006 * 109.91585 * 26.49136 * 22 13 3 38 38 H 1.09002 * 109.91584 * 265.19794 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0094 5 6 1.5271 2.1566 1.2240 6 1 0.9071 3.0344 1.1169 7 6 1.8494 1.6893 2.4804 8 7 2.6041 0.6201 2.6108 9 14 1.2130 2.5741 3.9976 10 1 -0.2719 2.5735 3.9846 11 1 1.6972 1.8774 5.2165 12 1 1.7075 3.9743 3.9979 13 7 1.5607 2.1314 -1.2056 14 6 2.1002 1.4929 -2.4335 15 6 1.9519 2.6026 -3.5045 16 6 2.2815 3.8907 -2.7157 17 1 3.3236 4.1724 -2.8668 18 6 1.3564 5.0299 -3.1486 19 1 0.3181 4.7208 -3.0271 20 6 1.6188 5.3699 -4.6171 21 8 1.6084 6.1812 -2.3407 22 6 2.0333 3.5325 -1.2388 23 1 -0.3634 -1.0254 0.0671 24 1 -0.3633 0.5710 0.8545 25 1 -0.3634 0.4546 -0.9217 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.8305 0.2912 3.4949 29 1 3.1483 1.2255 -2.2992 30 1 1.5118 0.6153 -2.7010 31 1 0.9318 2.6352 -3.8875 32 1 2.6648 2.4537 -4.3154 33 1 2.6570 5.6788 -4.7386 34 1 1.4265 4.4917 -5.2334 35 1 0.9594 6.1812 -4.9256 36 1 2.5152 6.5121 -2.3993 37 1 2.9606 3.6250 -0.6733 38 1 1.2724 4.1910 -0.8198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252783636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:01 Heat of formation + Delta-G solvation = -82.041691 kcal Electronic energy + Delta-G solvation = -16892.554675 eV Core-core repulsion = 14347.427874 eV Total energy + Delta-G solvation = -2545.126801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41896 -38.13633 -35.94067 -33.60208 -32.21881 -30.45352 -29.24568 -27.77591 -25.30863 -23.49873 -22.74671 -21.17416 -20.73557 -18.11660 -17.45924 -17.15889 -16.50538 -16.27298 -15.67463 -15.06903 -14.97413 -14.31693 -14.23156 -13.61799 -13.52625 -13.38523 -13.12153 -12.83371 -12.69206 -12.59176 -12.44692 -12.37346 -12.10030 -11.76574 -11.68616 -11.53023 -11.39554 -11.26247 -10.80900 -10.65759 -10.49182 -8.96747 -8.10023 -6.19697 1.39525 1.40721 1.48402 2.41638 3.17650 3.43229 3.53538 3.76673 3.86548 4.03430 4.40403 4.41021 4.47163 4.59227 4.61674 4.71764 4.76619 4.86366 4.91378 4.95038 5.04658 5.12574 5.17383 5.24808 5.26003 5.34727 5.40457 5.44778 5.53339 5.72444 5.76407 5.86238 6.28400 6.39989 6.70381 6.92547 6.92923 7.47962 8.95442 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.008413 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.473206 B = 3327.509254 C = 3983.967828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C 0.216 3.784 4 H -0.045 1.045 5 C -0.506 4.506 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.517 5.517 14 C 0.028 3.972 15 C -0.100 4.100 16 C -0.123 4.123 17 H 0.082 0.918 18 C 0.116 3.884 19 H 0.084 0.916 20 C -0.173 4.173 21 O -0.582 6.582 22 C 0.064 3.936 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.260 0.740 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.385 0.615 37 H 0.009 0.991 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 5.642 -13.494 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.109 3.891 4 H -0.028 1.028 5 C -0.544 4.544 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.241 5.241 14 C -0.100 4.100 15 C -0.138 4.138 16 C -0.142 4.142 17 H 0.101 0.899 18 C 0.057 3.943 19 H 0.102 0.898 20 C -0.231 4.231 21 O -0.389 6.389 22 C -0.064 4.064 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.027 0.973 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.575 5.415 -13.170 14.327 hybrid contribution 1.473 0.217 1.292 1.971 sum -0.102 5.632 -11.879 13.146 Atomic orbital electron populations 1.21313 0.95740 0.98553 1.00871 1.21381 0.96480 0.97242 0.99164 1.19213 0.90123 0.92128 0.87642 1.02770 1.21201 1.30672 1.11542 0.90990 0.93365 1.25600 0.95483 0.95782 1.01487 1.70003 1.38206 1.24076 1.23622 0.85737 0.78890 0.78691 0.79110 1.19763 1.20756 1.20058 1.64756 1.55393 1.01736 1.02230 1.23257 0.96883 0.98542 0.91347 1.22458 1.02991 0.91770 0.96540 1.22760 1.00380 0.97068 0.93991 0.89933 1.21918 0.98442 0.83627 0.90319 0.89764 1.22415 1.02774 1.02880 0.94992 1.86575 1.35862 1.46492 1.70009 1.22494 0.97144 0.90977 0.95811 0.94385 0.94764 0.92991 0.95326 0.92163 0.93037 0.96111 0.90414 0.89866 0.88828 0.91292 0.90314 0.91785 0.76623 0.97275 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.13 16 2 C -0.10 -5.14 5.28 30.59 0.16 -4.97 16 3 C 0.22 11.28 1.43 44.17 0.06 11.34 16 4 H -0.05 -2.67 8.00 -2.39 -0.02 -2.68 16 5 C -0.51 -28.58 6.72 25.60 0.17 -28.41 16 6 H 0.05 2.78 7.25 -2.91 -0.02 2.76 16 7 C 0.01 0.85 5.30 84.65 0.45 1.30 16 8 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 9 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.52 -22.41 4.43 -862.24 -3.82 -26.23 16 14 C 0.03 0.97 5.53 86.65 0.48 1.45 16 15 C -0.10 -2.55 5.64 31.80 0.18 -2.37 16 16 C -0.12 -3.43 2.76 -9.92 -0.03 -3.45 16 17 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 18 C 0.12 2.85 2.84 30.60 0.09 2.94 16 19 H 0.08 2.34 8.11 -2.38 -0.02 2.32 16 20 C -0.17 -2.95 9.36 71.98 0.67 -2.28 16 21 O -0.58 -15.73 12.77 -148.98 -1.90 -17.63 16 22 C 0.06 2.58 5.14 86.45 0.44 3.03 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.03 1.68 7.07 -2.38 -0.02 1.66 16 25 H 0.05 2.17 7.74 -2.38 -0.02 2.15 16 26 H 0.03 1.27 6.97 -2.39 -0.02 1.26 16 27 H 0.06 3.34 6.08 -2.39 -0.01 3.33 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.02 0.77 7.96 -2.39 -0.02 0.75 16 30 H 0.08 2.61 7.65 -2.39 -0.02 2.59 16 31 H 0.08 1.96 7.78 -2.39 -0.02 1.95 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.17 7.35 -2.39 -0.02 1.15 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.38 7.39 9.05 -74.06 -0.67 6.72 16 37 H 0.01 0.40 7.71 -2.38 -0.02 0.38 16 38 H 0.06 2.43 7.16 -2.39 -0.02 2.42 16 Total: -1.00 -64.73 293.82 0.26 -64.47 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.35 Total: 11.52 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.37 Total: -25.57 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -3.58 Total: -79.94 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.90 Total: -17.63 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.73 0.26 -64.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252783636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.574 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds