Wall clock time and date at job start Mon Mar 30 2020 03:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 H 1.09006 * 109.46628 * 53.57340 * 3 2 1 5 5 C 1.52999 * 109.47133 * 173.56881 * 3 2 1 6 6 H 1.08994 * 109.47011 * 179.25595 * 5 3 2 7 7 C 1.53001 * 109.46701 * 59.25874 * 5 3 2 8 8 C 1.50695 * 109.47258 * 299.26327 * 5 3 2 9 9 H 1.08004 * 120.00447 * 359.97438 * 8 5 3 10 10 C 1.37879 * 120.00077 * 179.97438 * 8 5 3 11 11 N 1.31508 * 119.99777 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00063 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47414 * 89.99852 * 12 10 8 14 14 H 1.48497 * 109.47102 * 209.99968 * 12 10 8 15 15 H 1.48505 * 109.47179 * 329.99892 * 12 10 8 16 16 N 1.46900 * 109.47237 * 293.57243 * 3 2 1 17 17 C 1.47019 * 110.99831 * 91.68761 * 16 3 2 18 18 C 1.53104 * 109.25321 * 177.60802 * 17 16 3 19 19 O 1.43015 * 109.25869 * 56.84883 * 18 17 16 20 20 C 1.43013 * 113.73967 * 301.32914 * 19 18 17 21 21 C 1.47018 * 110.99889 * 328.05478 * 16 3 2 22 22 H 1.08993 * 109.47388 * 308.56558 * 1 2 3 23 23 H 1.09002 * 109.47044 * 68.56880 * 1 2 3 24 24 H 1.09002 * 109.46939 * 188.56812 * 1 2 3 25 25 H 1.09003 * 109.47124 * 240.00075 * 2 1 3 26 26 H 1.08998 * 109.46857 * 120.00236 * 2 1 3 27 27 H 1.09007 * 109.46936 * 189.33035 * 7 5 3 28 28 H 1.09003 * 109.47410 * 309.33070 * 7 5 3 29 29 H 1.08997 * 109.47119 * 69.33229 * 7 5 3 30 30 H 0.97006 * 119.99802 * 180.02562 * 11 10 8 31 31 H 1.08995 * 109.50319 * 297.53868 * 17 16 3 32 32 H 1.08995 * 109.50570 * 57.67482 * 17 16 3 33 33 H 1.09002 * 109.50065 * 296.91202 * 18 17 16 34 34 H 1.08999 * 109.53797 * 176.80986 * 18 17 16 35 35 H 1.09007 * 109.50675 * 298.73882 * 20 19 18 36 36 H 1.08994 * 109.54546 * 178.63017 * 20 19 18 37 37 H 1.08997 * 109.50254 * 302.32597 * 21 16 3 38 38 H 1.08994 * 109.50703 * 62.41285 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5857 1.9884 0.8269 5 6 3.5614 1.4456 0.1616 6 1 3.9261 2.4727 0.1483 7 6 4.1980 0.6635 -0.9891 8 6 3.9287 0.7989 1.4722 9 1 3.1545 0.4236 2.1250 10 6 5.2533 0.6863 1.8381 11 7 6.1961 1.1428 1.0431 12 14 5.7086 -0.1147 3.4631 13 1 5.8983 -1.5735 3.2599 14 1 6.9690 0.4821 3.9732 15 1 4.6202 0.1104 4.4481 16 7 1.6810 2.0888 -1.2694 17 6 0.3845 2.7739 -1.1636 18 6 0.0781 3.4818 -2.4862 19 8 0.1001 2.5254 -3.5493 20 6 1.3482 1.8398 -3.6813 21 6 1.6675 1.1153 -2.3709 22 1 -0.3634 0.6406 0.8035 23 1 -0.3633 0.3755 -0.9566 24 1 -0.3633 -1.0162 0.1531 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.2603 0.5233 -0.7892 28 1 3.7137 -0.3089 -1.0792 29 1 4.0734 1.2189 -1.9186 30 1 7.1281 1.0633 1.3003 31 1 -0.3967 2.0438 -0.9522 32 1 0.4252 3.5078 -0.3589 33 1 0.8302 4.2489 -2.6710 34 1 -0.9076 3.9439 -2.4325 35 1 2.1372 2.5592 -3.9009 36 1 1.2817 1.1139 -4.4916 37 1 2.6447 0.6386 -2.4473 38 1 0.9073 0.3583 -2.1783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:00 Heat of formation + Delta-G solvation = -53.435843 kcal Electronic energy + Delta-G solvation = -17304.853599 eV Core-core repulsion = 14760.967241 eV Total energy + Delta-G solvation = -2543.886359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08544 -38.35913 -35.44108 -33.17762 -32.26945 -31.85160 -28.58865 -27.29781 -25.41901 -25.01191 -23.04119 -21.35474 -20.33702 -18.15274 -17.29557 -16.91285 -16.78336 -16.27620 -15.93611 -15.89362 -15.27048 -14.92253 -14.22285 -13.86268 -13.66817 -13.38671 -12.99001 -12.83079 -12.74810 -12.59819 -12.40250 -12.25903 -12.14346 -11.94237 -11.68450 -11.48899 -11.19912 -11.08187 -10.72118 -10.45620 -10.24286 -8.91919 -8.02998 -6.16659 1.41421 1.42707 1.51868 2.44417 2.92790 3.14934 3.23912 4.00389 4.07072 4.16343 4.21440 4.29566 4.36205 4.40935 4.47991 4.70293 4.74100 4.78993 4.87537 4.90361 4.92917 4.99472 5.05948 5.10662 5.22135 5.28854 5.38776 5.44470 5.57983 5.66814 5.96012 6.19593 6.21695 6.30938 6.37622 6.51813 6.96438 7.50838 9.00765 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041713 B = 0.007696 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.084764 B = 3637.311593 C = 3881.873178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.106 3.894 4 H 0.051 0.949 5 C 0.059 3.941 6 H -0.013 1.013 7 C -0.123 4.123 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.010 3.990 11 N -0.918 5.918 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.269 1.269 16 N -0.539 5.539 17 C 0.006 3.994 18 C 0.066 3.934 19 O -0.400 6.400 20 C 0.065 3.935 21 C -0.002 4.002 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.258 0.742 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 0.320 -6.173 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.002 4.002 4 H 0.069 0.931 5 C 0.040 3.960 6 H 0.005 0.995 7 C -0.180 4.180 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.188 4.188 11 N -0.558 5.558 12 Si 0.775 3.225 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.193 1.193 16 N -0.264 5.264 17 C -0.122 4.122 18 C -0.010 4.010 19 O -0.318 6.318 20 C -0.012 4.012 21 C -0.129 4.129 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.164 0.673 -6.405 12.888 hybrid contribution 0.481 -0.821 1.423 1.712 sum -10.683 -0.147 -4.982 11.788 Atomic orbital electron populations 1.22020 0.95210 1.01897 1.01441 1.22082 0.95723 0.97871 1.02321 1.21636 0.96745 0.92615 0.89179 0.93079 1.18494 0.90099 0.93976 0.93440 0.99486 1.21773 1.01829 0.97699 0.96712 1.21532 0.91894 1.38110 1.04336 0.92739 1.25695 0.96805 0.96385 0.99878 1.70049 1.00077 1.47748 1.37917 0.85701 0.77542 0.78630 0.80632 1.20257 1.21291 1.19348 1.62363 1.29145 1.30017 1.04856 1.23074 0.90931 0.98926 0.99301 1.22747 1.02938 0.90446 0.84906 1.87896 1.35254 1.55672 1.53015 1.22756 0.85712 0.95983 0.96712 1.23273 1.02909 0.94966 0.91761 0.92955 0.92107 0.92016 0.91675 0.92465 0.93532 0.94976 0.94984 0.93312 0.92805 0.90232 0.92975 0.86390 0.93123 0.86771 0.89155 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.24 71.98 0.59 -3.68 16 2 C -0.14 -5.11 4.19 30.60 0.13 -4.98 16 3 C 0.11 4.28 1.93 44.92 0.09 4.37 16 4 H 0.05 2.13 7.64 -2.38 -0.02 2.11 16 5 C 0.06 2.96 2.32 -11.54 -0.03 2.93 16 6 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 7 C -0.12 -5.89 7.35 71.98 0.53 -5.36 16 8 C -0.52 -28.20 7.75 25.60 0.20 -28.00 16 9 H 0.05 2.89 6.79 -2.91 -0.02 2.87 16 10 C 0.01 0.58 5.27 84.66 0.45 1.02 16 11 N -0.92 -53.65 11.29 21.45 0.24 -53.41 16 12 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 N -0.54 -18.93 4.42 -869.96 -3.84 -22.77 16 17 C 0.01 0.16 5.23 86.32 0.45 0.61 16 18 C 0.07 1.66 7.01 72.02 0.50 2.17 16 19 O -0.40 -11.14 10.83 -148.98 -1.61 -12.76 16 20 C 0.07 1.76 7.01 72.01 0.50 2.27 16 21 C 0.00 -0.05 3.78 86.31 0.33 0.28 16 22 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 23 H 0.06 1.67 4.46 -2.39 -0.01 1.66 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.34 4.56 -2.39 -0.01 2.33 16 26 H 0.06 2.31 6.48 -2.39 -0.02 2.29 16 27 H 0.05 2.54 5.87 -2.38 -0.01 2.53 16 28 H 0.03 1.42 5.75 -2.39 -0.01 1.41 16 29 H 0.03 1.41 6.24 -2.39 -0.01 1.39 16 30 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 31 H 0.05 1.49 4.94 -2.39 -0.01 1.48 16 32 H 0.08 2.25 8.00 -2.39 -0.02 2.23 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 3.10 4.11 -2.39 -0.01 3.09 16 38 H 0.05 1.56 4.70 -2.39 -0.01 1.54 16 Total: -1.00 -60.35 272.25 1.60 -58.75 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.04 Total: 12.83 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.74 Total: -28.37 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -3.60 Total: -76.18 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.61 Total: -12.76 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -60.35 1.60 -58.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.317 kcal (2) G-P(sol) polarization free energy of solvation -60.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds