Wall clock time and date at job start Mon Mar 30 2020 03:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 H 1.08999 * 109.47157 * 302.03472 * 3 2 1 5 5 C 1.52998 * 109.46986 * 182.03494 * 3 2 1 6 6 H 1.09007 * 109.46951 * 180.93572 * 5 3 2 7 7 C 1.52999 * 109.46951 * 300.93208 * 5 3 2 8 8 C 1.50694 * 109.47562 * 60.93298 * 5 3 2 9 9 H 1.08003 * 119.99429 * 0.02562 * 8 5 3 10 10 C 1.37874 * 120.00300 * 179.97438 * 8 5 3 11 11 N 1.31509 * 120.00089 * 0.02562 * 10 8 5 12 12 Si 1.86808 * 119.99911 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.46734 * 90.00156 * 12 10 8 14 14 H 1.48501 * 109.46862 * 210.00334 * 12 10 8 15 15 H 1.48500 * 109.47104 * 329.99960 * 12 10 8 16 16 N 1.46902 * 109.46944 * 62.03474 * 3 2 1 17 17 C 1.47015 * 110.99822 * 163.65766 * 16 3 2 18 18 C 1.53096 * 109.25499 * 177.60855 * 17 16 3 19 19 O 1.43021 * 109.26210 * 56.85043 * 18 17 16 20 20 C 1.43017 * 113.73329 * 301.33099 * 19 18 17 21 21 C 1.47015 * 110.99984 * 40.02148 * 16 3 2 22 22 H 1.09004 * 109.47513 * 65.62711 * 1 2 3 23 23 H 1.09002 * 109.47162 * 185.62643 * 1 2 3 24 24 H 1.09005 * 109.47070 * 305.62769 * 1 2 3 25 25 H 1.08999 * 109.46967 * 240.00684 * 2 1 3 26 26 H 1.08993 * 109.47639 * 120.00350 * 2 1 3 27 27 H 1.09002 * 109.47443 * 280.25599 * 7 5 3 28 28 H 1.08999 * 109.47560 * 40.26525 * 7 5 3 29 29 H 1.09002 * 109.47275 * 160.26201 * 7 5 3 30 30 H 0.97003 * 119.99969 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.50875 * 297.53917 * 17 16 3 32 32 H 1.08990 * 109.50716 * 57.67735 * 17 16 3 33 33 H 1.08999 * 109.51092 * 296.91085 * 18 17 16 34 34 H 1.09004 * 109.50541 * 176.78246 * 18 17 16 35 35 H 1.09006 * 109.50639 * 298.72789 * 20 19 18 36 36 H 1.09004 * 109.54053 * 178.62692 * 20 19 18 37 37 H 1.08997 * 109.50583 * 302.33177 * 21 16 3 38 38 H 1.09007 * 109.50229 * 62.45673 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6471 1.9668 -0.8712 5 6 3.5691 1.4428 -0.0512 6 1 3.9330 2.4703 -0.0344 7 6 4.1200 0.6869 1.1595 8 6 4.0295 0.7675 -1.3172 9 1 3.3039 0.3774 -2.0157 10 6 5.3768 0.6484 -1.5843 11 7 6.2603 1.1238 -0.7341 12 14 5.9475 -0.1882 -3.1541 13 1 6.0757 0.8221 -4.2349 14 1 7.2645 -0.8333 -2.9205 15 1 4.9558 -1.2185 -3.5545 16 7 1.5908 2.1207 1.2233 17 6 2.3593 3.3523 1.4554 18 6 1.8202 4.0561 2.7035 19 8 1.8853 3.1596 3.8159 20 6 1.1473 1.9497 3.6241 21 6 1.6795 1.2245 2.3853 22 1 -0.3634 0.4241 -0.9361 23 1 -0.3633 -1.0227 0.1008 24 1 -0.3633 0.5987 0.8353 25 1 1.8932 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.0978 1.3365 2.0345 28 1 3.5079 -0.1955 1.3463 29 1 5.1471 0.3809 0.9603 30 1 7.2083 1.0397 -0.9218 31 1 3.4101 3.1032 1.6033 32 1 2.2587 4.0119 0.5936 33 1 0.7850 4.3531 2.5354 34 1 2.4235 4.9396 2.9123 35 1 0.0924 2.1853 3.4828 36 1 1.2632 1.3094 4.4986 37 1 1.0828 0.3309 2.2022 38 1 2.7195 0.9414 2.5480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:04 Heat of formation + Delta-G solvation = -31.723687 kcal Electronic energy + Delta-G solvation = -17437.194558 eV Core-core repulsion = 14894.249709 eV Total energy + Delta-G solvation = -2542.944849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72487 -36.93794 -33.28003 -32.17505 -30.68980 -29.97155 -27.13654 -25.42915 -23.84305 -23.72084 -21.25305 -20.03847 -18.50763 -16.32332 -15.92092 -15.66391 -14.94756 -14.74406 -14.56325 -14.07234 -13.79582 -13.47253 -12.64059 -12.28002 -12.22350 -11.69893 -11.33932 -11.14910 -11.03685 -10.90648 -10.88009 -10.59299 -10.47058 -10.38909 -10.00701 -9.92394 -9.59495 -9.35156 -9.18656 -8.76709 -8.34321 -7.32524 -5.98008 -4.06199 3.28556 3.35778 3.38329 4.17853 4.41127 4.57776 5.30591 5.36228 5.44912 5.52525 5.60733 5.70879 5.74838 5.83895 5.93157 5.95540 5.99072 6.27635 6.33503 6.41314 6.45441 6.52557 6.57024 6.74005 6.82758 6.95177 6.98622 7.12089 7.36449 7.45501 7.62006 7.67876 7.73624 7.96390 8.17822 8.46576 8.97431 9.58354 11.05908 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.008787 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.688326 B = 3185.935534 C = 3631.404502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.090 3.910 4 H 0.068 0.932 5 C 0.019 3.981 6 H 0.030 0.970 7 C -0.145 4.145 8 C -0.507 4.507 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.889 5.889 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.275 1.275 16 N -0.529 5.529 17 C 0.013 3.987 18 C 0.066 3.934 19 O -0.391 6.391 20 C 0.065 3.935 21 C -0.018 4.018 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.259 0.741 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 1.195 5.383 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.017 4.017 4 H 0.087 0.913 5 C -0.001 4.001 6 H 0.048 0.952 7 C -0.202 4.202 8 C -0.545 4.545 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.528 5.528 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.200 1.200 16 N -0.254 5.254 17 C -0.116 4.116 18 C -0.011 4.011 19 O -0.309 6.309 20 C -0.012 4.012 21 C -0.146 4.146 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.177 1.381 5.509 10.792 hybrid contribution 1.157 -0.729 -1.127 1.772 sum -8.020 0.652 4.382 9.163 Atomic orbital electron populations 1.21812 0.97159 0.99855 1.01650 1.21729 0.94032 0.96990 1.02767 1.21870 0.96672 0.93082 0.90079 0.91350 1.19256 0.89391 0.96812 0.94633 0.95241 1.22187 1.03895 0.97934 0.96164 1.21156 0.91497 1.37418 1.04463 0.92564 1.24964 0.96982 0.95710 0.96473 1.69913 1.01230 1.46296 1.35386 0.86666 0.78088 0.79738 0.83933 1.20788 1.21353 1.19956 1.62642 1.54162 1.05411 1.03139 1.22778 0.97974 0.93092 0.97728 1.22659 1.00293 0.92097 0.86053 1.87920 1.73109 1.29971 1.39948 1.22661 0.94849 0.86005 0.97715 1.23455 1.03315 0.96861 0.90923 0.93560 0.94328 0.92282 0.90783 0.91986 0.96394 0.95394 0.90109 0.93125 0.92063 0.90441 0.93208 0.89265 0.93385 0.89478 0.89766 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.37 37.15 0.35 -1.93 16 2 C -0.12 -2.17 4.31 -26.73 -0.12 -2.29 16 3 C 0.09 1.82 2.19 -67.71 -0.15 1.67 16 4 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 5 C 0.02 0.44 1.56 -91.78 -0.14 0.30 16 6 H 0.03 0.78 6.34 -51.92 -0.33 0.45 16 7 C -0.14 -3.41 7.16 37.16 0.27 -3.14 16 8 C -0.51 -13.43 7.81 -34.44 -0.27 -13.70 16 9 H 0.06 1.47 6.78 -52.48 -0.36 1.12 16 10 C 0.06 1.63 5.18 -17.82 -0.09 1.53 16 11 N -0.89 -25.28 11.38 55.43 0.63 -24.65 16 12 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 N -0.53 -9.48 4.27 -226.33 -0.97 -10.45 16 17 C 0.01 0.23 4.56 -3.71 -0.02 0.21 16 18 C 0.07 1.01 7.01 37.21 0.26 1.27 16 19 O -0.39 -6.52 10.83 -35.23 -0.38 -6.91 16 20 C 0.06 0.96 7.01 37.20 0.26 1.22 16 21 C -0.02 -0.30 3.89 -3.71 -0.01 -0.31 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.90 6.53 -51.93 -0.34 0.56 16 25 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 26 H 0.06 1.15 4.40 -51.93 -0.23 0.92 16 27 H 0.02 0.40 5.09 -51.93 -0.26 0.14 16 28 H 0.03 0.61 5.02 -51.93 -0.26 0.35 16 29 H 0.08 2.17 5.82 -51.93 -0.30 1.87 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.06 1.26 5.05 -51.93 -0.26 1.00 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.33 4.98 -51.93 -0.26 1.07 16 38 H 0.08 1.44 3.68 -51.93 -0.19 1.25 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -27.88 271.13 -6.97 -34.85 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.65 Total: 2.15 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 0.34 Total: -15.18 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.34 Total: -35.10 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.38 Total: -6.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.88 -6.97 -34.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.127 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds