Wall clock time and date at job start Mon Mar 30 2020 03:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 H 1.08999 * 109.47157 * 302.03472 * 3 2 1 5 5 C 1.52998 * 109.46986 * 182.03494 * 3 2 1 6 6 H 1.09007 * 109.46951 * 180.93572 * 5 3 2 7 7 C 1.52999 * 109.46951 * 300.93208 * 5 3 2 8 8 C 1.50694 * 109.47562 * 60.93298 * 5 3 2 9 9 H 1.08003 * 119.99429 * 0.02562 * 8 5 3 10 10 C 1.37874 * 120.00300 * 179.97438 * 8 5 3 11 11 N 1.31509 * 120.00089 * 0.02562 * 10 8 5 12 12 Si 1.86808 * 119.99911 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.46734 * 90.00156 * 12 10 8 14 14 H 1.48501 * 109.46862 * 210.00334 * 12 10 8 15 15 H 1.48500 * 109.47104 * 329.99960 * 12 10 8 16 16 N 1.46902 * 109.46944 * 62.03474 * 3 2 1 17 17 C 1.47015 * 110.99822 * 163.65766 * 16 3 2 18 18 C 1.53096 * 109.25499 * 177.60855 * 17 16 3 19 19 O 1.43021 * 109.26210 * 56.85043 * 18 17 16 20 20 C 1.43017 * 113.73329 * 301.33099 * 19 18 17 21 21 C 1.47015 * 110.99984 * 40.02148 * 16 3 2 22 22 H 1.09004 * 109.47513 * 65.62711 * 1 2 3 23 23 H 1.09002 * 109.47162 * 185.62643 * 1 2 3 24 24 H 1.09005 * 109.47070 * 305.62769 * 1 2 3 25 25 H 1.08999 * 109.46967 * 240.00684 * 2 1 3 26 26 H 1.08993 * 109.47639 * 120.00350 * 2 1 3 27 27 H 1.09002 * 109.47443 * 280.25599 * 7 5 3 28 28 H 1.08999 * 109.47560 * 40.26525 * 7 5 3 29 29 H 1.09002 * 109.47275 * 160.26201 * 7 5 3 30 30 H 0.97003 * 119.99969 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.50875 * 297.53917 * 17 16 3 32 32 H 1.08990 * 109.50716 * 57.67735 * 17 16 3 33 33 H 1.08999 * 109.51092 * 296.91085 * 18 17 16 34 34 H 1.09004 * 109.50541 * 176.78246 * 18 17 16 35 35 H 1.09006 * 109.50639 * 298.72789 * 20 19 18 36 36 H 1.09004 * 109.54053 * 178.62692 * 20 19 18 37 37 H 1.08997 * 109.50583 * 302.33177 * 21 16 3 38 38 H 1.09007 * 109.50229 * 62.45673 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6471 1.9668 -0.8712 5 6 3.5691 1.4428 -0.0512 6 1 3.9330 2.4703 -0.0344 7 6 4.1200 0.6869 1.1595 8 6 4.0295 0.7675 -1.3172 9 1 3.3039 0.3774 -2.0157 10 6 5.3768 0.6484 -1.5843 11 7 6.2603 1.1238 -0.7341 12 14 5.9475 -0.1882 -3.1541 13 1 6.0757 0.8221 -4.2349 14 1 7.2645 -0.8333 -2.9205 15 1 4.9558 -1.2185 -3.5545 16 7 1.5908 2.1207 1.2233 17 6 2.3593 3.3523 1.4554 18 6 1.8202 4.0561 2.7035 19 8 1.8853 3.1596 3.8159 20 6 1.1473 1.9497 3.6241 21 6 1.6795 1.2245 2.3853 22 1 -0.3634 0.4241 -0.9361 23 1 -0.3633 -1.0227 0.1008 24 1 -0.3633 0.5987 0.8353 25 1 1.8932 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.0978 1.3365 2.0345 28 1 3.5079 -0.1955 1.3463 29 1 5.1471 0.3809 0.9603 30 1 7.2083 1.0397 -0.9218 31 1 3.4101 3.1032 1.6033 32 1 2.2587 4.0119 0.5936 33 1 0.7850 4.3531 2.5354 34 1 2.4235 4.9396 2.9123 35 1 0.0924 2.1853 3.4828 36 1 1.2632 1.3094 4.4986 37 1 1.0828 0.3309 2.2022 38 1 2.7195 0.9414 2.5480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:04 Heat of formation + Delta-G solvation = -50.030147 kcal Electronic energy + Delta-G solvation = -17437.988385 eV Core-core repulsion = 14894.249709 eV Total energy + Delta-G solvation = -2543.738677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18516 -38.37913 -35.20067 -33.59551 -32.16157 -31.67478 -28.63532 -27.36844 -25.39286 -25.08790 -22.80819 -21.55044 -20.15518 -18.22170 -17.40405 -16.96481 -16.77106 -16.07969 -15.97656 -15.73597 -15.37399 -15.01466 -14.18646 -13.97919 -13.74413 -13.08104 -12.94062 -12.80954 -12.75624 -12.53906 -12.52859 -12.24168 -12.16560 -11.87061 -11.78907 -11.39869 -11.18662 -11.03690 -10.76146 -10.48728 -10.38554 -8.94093 -8.05789 -6.21887 1.38711 1.40169 1.49422 2.41867 2.95266 3.15260 3.20131 4.03569 4.11271 4.21640 4.33566 4.35832 4.42602 4.48063 4.52931 4.67501 4.77108 4.82295 4.84128 4.90897 5.00016 5.01973 5.09063 5.20259 5.21920 5.28816 5.33304 5.53970 5.62324 5.65562 5.84648 5.96913 6.21407 6.25065 6.33985 6.47415 6.90916 7.45918 8.95552 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.008787 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.688326 B = 3185.935534 C = 3631.404502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.098 3.902 4 H 0.057 0.943 5 C 0.020 3.980 6 H -0.004 1.004 7 C -0.126 4.126 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.009 3.991 11 N -0.919 5.919 12 Si 0.949 3.051 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.266 1.266 16 N -0.518 5.518 17 C 0.013 3.987 18 C 0.072 3.928 19 O -0.407 6.407 20 C 0.066 3.934 21 C -0.018 4.018 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.257 0.743 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.851 0.723 5.719 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.010 4.010 4 H 0.075 0.925 5 C 0.001 3.999 6 H 0.014 0.986 7 C -0.183 4.183 8 C -0.556 4.556 9 H 0.075 0.925 10 C -0.189 4.189 11 N -0.560 5.560 12 Si 0.775 3.225 13 H -0.205 1.205 14 H -0.213 1.213 15 H -0.190 1.190 16 N -0.243 5.243 17 C -0.115 4.115 18 C -0.005 4.005 19 O -0.326 6.326 20 C -0.011 4.011 21 C -0.146 4.146 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.078 0.908 5.848 12.560 hybrid contribution 1.743 -0.555 -1.214 2.195 sum -9.335 0.353 4.634 10.428 Atomic orbital electron populations 1.21707 0.94253 1.01406 1.02024 1.21645 0.96488 0.95160 1.01722 1.21665 0.93733 0.94567 0.91016 0.92501 1.19198 0.92292 0.94524 0.93918 0.98629 1.21981 1.01793 0.98364 0.96153 1.21512 0.91675 1.37101 1.05339 0.92533 1.25720 0.97288 0.96504 0.99373 1.70060 1.01296 1.47549 1.37057 0.85694 0.77585 0.78875 0.80344 1.20460 1.21325 1.19028 1.62670 1.53266 1.05445 1.02877 1.22781 0.96126 0.93333 0.99307 1.22701 1.01518 0.91992 0.84265 1.87909 1.73688 1.30691 1.40305 1.22801 0.95361 0.85511 0.97407 1.23495 1.02247 0.97530 0.91329 0.93415 0.92228 0.91616 0.92769 0.92023 0.96072 0.93953 0.93653 0.93343 0.95606 0.90599 0.91303 0.87624 0.91615 0.87212 0.88350 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.37 71.98 0.67 -3.16 16 2 C -0.11 -4.02 4.31 30.59 0.13 -3.89 16 3 C 0.10 3.94 2.19 44.92 0.10 4.04 16 4 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 5 C 0.02 1.00 1.56 -11.54 -0.02 0.98 16 6 H 0.00 -0.24 6.34 -2.38 -0.02 -0.25 16 7 C -0.13 -6.07 7.16 71.98 0.52 -5.56 16 8 C -0.52 -27.93 7.81 25.60 0.20 -27.73 16 9 H 0.06 2.98 6.78 -2.91 -0.02 2.96 16 10 C 0.01 0.50 5.18 84.65 0.44 0.94 16 11 N -0.92 -53.81 11.38 21.45 0.24 -53.56 16 12 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 N -0.52 -18.04 4.27 -869.99 -3.72 -21.75 16 17 C 0.01 0.47 4.56 86.31 0.39 0.86 16 18 C 0.07 2.06 7.01 72.01 0.50 2.56 16 19 O -0.41 -12.69 10.83 -148.98 -1.61 -14.30 16 20 C 0.07 1.76 7.01 72.01 0.50 2.26 16 21 C -0.02 -0.58 3.89 86.31 0.34 -0.25 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.77 6.53 -2.38 -0.02 1.75 16 25 H 0.05 2.14 6.62 -2.39 -0.02 2.13 16 26 H 0.06 2.19 4.40 -2.39 -0.01 2.18 16 27 H 0.02 0.98 5.09 -2.39 -0.01 0.97 16 28 H 0.04 1.86 5.02 -2.39 -0.01 1.85 16 29 H 0.04 2.51 5.82 -2.39 -0.01 2.49 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.03 1.10 5.05 -2.39 -0.01 1.09 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.10 2.83 4.98 -2.39 -0.01 2.81 16 38 H 0.05 1.92 3.68 -2.38 -0.01 1.91 16 Total: -1.00 -60.39 271.13 1.77 -58.62 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.05 Total: 14.16 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.78 Total: -28.94 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -3.47 Total: -75.32 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.61 Total: -14.30 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -60.39 1.77 -58.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.594 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds