Wall clock time and date at job start Mon Mar 30 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48555 * 110.99922 * 2 1 4 4 C 1.54386 * 104.59300 * 200.95684 * 3 2 1 5 5 C 1.54262 * 105.05867 * 23.85308 * 4 3 2 6 6 C 1.50694 * 110.32369 * 118.89544 * 5 4 3 7 7 H 1.08009 * 120.00451 * 7.80273 * 6 5 4 8 8 C 1.37878 * 120.00282 * 187.80409 * 6 5 4 9 9 N 1.31513 * 119.99516 * 1.45392 * 8 6 5 10 10 Si 1.86798 * 120.00203 * 181.17650 * 8 6 5 11 11 H 1.48499 * 109.46927 * 270.27428 * 10 8 6 12 12 H 1.48500 * 109.47267 * 30.27482 * 10 8 6 13 13 H 1.48506 * 109.47204 * 150.27648 * 10 8 6 14 14 O 1.42901 * 110.32167 * 241.00218 * 5 4 3 15 15 C 1.42900 * 113.99867 * 291.14846 * 14 5 4 16 16 C 1.53000 * 109.46875 * 53.91082 * 15 14 5 17 17 C 1.52996 * 109.47119 * 173.90805 * 15 14 5 18 18 C 1.53002 * 109.47240 * 293.91090 * 15 14 5 19 19 C 1.48718 * 111.01341 * 244.48691 * 2 1 3 20 20 H 1.09004 * 109.47271 * 60.12292 * 1 2 3 21 21 H 1.08994 * 109.47605 * 180.12642 * 1 2 3 22 22 H 1.09006 * 109.47580 * 300.12999 * 1 2 3 23 23 H 1.08999 * 110.41494 * 82.18425 * 3 2 1 24 24 H 1.08993 * 110.51463 * 319.78732 * 3 2 1 25 25 H 1.08998 * 110.32143 * 264.95480 * 4 3 2 26 26 H 1.08998 * 110.32292 * 142.74969 * 4 3 2 27 27 H 0.96999 * 120.00444 * 353.62525 * 9 8 6 28 28 H 1.08997 * 109.47345 * 57.84953 * 16 15 14 29 29 H 1.09001 * 109.46764 * 177.84259 * 16 15 14 30 30 H 1.08995 * 109.47049 * 297.84062 * 16 15 14 31 31 H 1.09007 * 109.47075 * 59.99984 * 17 15 14 32 32 H 1.08994 * 109.47293 * 180.02562 * 17 15 14 33 33 H 1.08997 * 109.47322 * 300.00419 * 17 15 14 34 34 H 1.09003 * 109.46956 * 80.42954 * 18 15 14 35 35 H 1.08997 * 109.46739 * 200.43068 * 18 15 14 36 36 H 1.08998 * 109.46817 * 320.42958 * 18 15 14 37 37 H 1.08998 * 110.38822 * 40.25256 * 19 2 1 38 38 H 1.08996 * 110.51349 * 277.75039 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0540 -1.3584 6 6 3.7895 0.2354 -2.7962 7 1 4.1156 1.2238 -3.0848 8 6 3.6900 -0.7616 -3.7434 9 7 3.2656 -1.9573 -3.3974 10 14 4.1506 -0.4117 -5.5196 11 1 2.9546 0.0721 -6.2550 12 1 5.2108 0.6273 -5.5607 13 1 4.6525 -1.6565 -6.1553 14 8 4.3693 -0.9910 -0.8047 15 6 5.7390 -0.6125 -0.9548 16 6 5.9446 0.7935 -0.3876 17 6 6.6275 -1.6024 -0.1988 18 6 6.1114 -0.6232 -2.4388 19 6 2.0023 -0.5980 -1.2529 20 1 -0.3634 0.5119 -0.8911 21 1 -0.3634 -1.0276 0.0023 22 1 -0.3634 0.5159 0.8888 23 1 2.0079 1.7916 1.0120 24 1 1.4104 2.0228 -0.6591 25 1 4.1482 1.1748 0.2935 26 1 3.6937 2.0995 -1.1698 27 1 3.1109 -2.1654 -2.4627 28 1 5.6432 0.8105 0.6598 29 1 6.9967 1.0671 -0.4672 30 1 5.3406 1.5046 -0.9511 31 1 6.4810 -2.6041 -0.6029 32 1 7.6722 -1.3134 -0.3130 33 1 6.3622 -1.5947 0.8583 34 1 5.7639 0.2976 -2.9073 35 1 7.1941 -0.6968 -2.5411 36 1 5.6415 -1.4781 -2.9251 37 1 1.4105 -0.2753 -2.1095 38 1 2.0107 -1.6857 -1.1836 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:45 Heat of formation + Delta-G solvation = -15.129669 kcal Electronic energy + Delta-G solvation = -17963.237709 eV Core-core repulsion = 15421.012431 eV Total energy + Delta-G solvation = -2542.225278 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24452 -36.58813 -33.14651 -31.88976 -30.76705 -27.27938 -26.94496 -26.51002 -25.05052 -23.21338 -20.33623 -19.85328 -18.93672 -17.09461 -15.24953 -14.73006 -14.46127 -14.12005 -13.81523 -13.58645 -13.36993 -12.95414 -12.35941 -12.17824 -11.77332 -11.70059 -11.54046 -11.08451 -11.06956 -10.85363 -10.75704 -10.62324 -10.27485 -10.24655 -10.12663 -9.87540 -9.46750 -9.26839 -8.88209 -8.19403 -7.95136 -7.67994 -6.32795 -4.06674 3.37568 3.40382 3.55475 4.44070 4.82560 4.92653 5.36467 5.58522 5.65004 5.80644 5.82485 5.86090 6.00005 6.06508 6.15254 6.21800 6.23210 6.35546 6.38893 6.43333 6.60981 6.65843 6.72547 6.75202 6.83931 6.93269 6.96937 7.12476 7.27572 7.40244 7.54904 7.75180 7.85332 8.04423 8.31566 8.77854 8.99032 9.60919 11.01567 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.015021 C = 0.010592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.536842 B = 1863.612784 C = 2642.978510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.153 4.153 5 C 0.227 3.773 6 C -0.619 4.619 7 H 0.052 0.948 8 C 0.042 3.958 9 N -0.895 5.895 10 Si 1.053 2.947 11 H -0.289 1.289 12 H -0.286 1.286 13 H -0.283 1.283 14 O -0.381 6.381 15 C 0.133 3.867 16 C -0.180 4.180 17 C -0.136 4.136 18 C -0.164 4.164 19 C 0.061 3.939 20 H 0.022 0.978 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.287 0.713 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 4.382 4.193 6.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.095 4.095 4 C -0.191 4.191 5 C 0.188 3.812 6 C -0.656 4.656 7 H 0.070 0.930 8 C -0.167 4.167 9 N -0.531 5.531 10 Si 0.882 3.118 11 H -0.215 1.215 12 H -0.212 1.212 13 H -0.208 1.208 14 O -0.301 6.301 15 C 0.093 3.907 16 C -0.237 4.237 17 C -0.193 4.193 18 C -0.221 4.221 19 C -0.066 4.066 20 H 0.040 0.960 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.029 0.971 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.292 3.232 3.266 4.773 hybrid contribution -0.332 1.419 0.645 1.594 sum 0.959 4.651 3.911 6.152 Atomic orbital electron populations 1.22432 0.89809 1.01369 0.99641 1.65458 1.06598 1.14994 1.37593 1.23069 0.97036 0.90214 0.99178 1.23660 0.94919 1.00377 1.00146 1.19713 0.85815 0.84209 0.91425 1.22181 1.51826 0.98838 0.92784 0.92963 1.25574 0.93419 0.93307 1.04368 1.70645 1.38709 1.21387 1.22369 0.83817 0.76631 0.75821 0.75538 1.21528 1.21188 1.20841 1.87842 1.13634 1.48610 1.79998 1.20819 0.83484 0.91729 0.94683 1.23036 1.00507 0.99816 1.00296 1.21786 0.97873 0.99856 0.99795 1.22893 0.96211 1.06173 0.96797 1.23239 0.95523 0.99596 0.88276 0.95986 0.91905 0.92413 0.91902 0.94973 0.90189 0.91892 0.89894 0.93191 0.94101 0.90204 0.92574 0.92681 0.93227 0.89329 0.97098 0.90867 0.93107 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.53 60.06 0.57 0.86 16 2 N -0.52 -10.88 5.66 -238.09 -1.35 -12.22 16 3 C 0.03 0.64 6.49 -2.18 -0.01 0.63 16 4 C -0.15 -3.21 4.25 -25.34 -0.11 -3.32 16 5 C 0.23 5.44 0.53 -90.39 -0.05 5.39 16 6 C -0.62 -15.77 4.12 -34.44 -0.14 -15.91 16 7 H 0.05 1.35 7.00 -52.48 -0.37 0.98 16 8 C 0.04 1.10 2.94 -17.82 -0.05 1.05 16 9 N -0.89 -25.26 12.88 55.43 0.71 -24.54 16 10 Si 1.05 24.02 29.24 -169.99 -4.97 19.05 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 O -0.38 -9.40 8.92 -35.23 -0.31 -9.71 16 15 C 0.13 2.85 1.11 -90.62 -0.10 2.75 16 16 C -0.18 -3.41 6.73 37.16 0.25 -3.16 16 17 C -0.14 -2.53 8.75 37.16 0.33 -2.21 16 18 C -0.16 -3.69 6.73 37.16 0.25 -3.44 16 19 C 0.06 1.45 4.42 -2.09 -0.01 1.44 16 20 H 0.02 0.37 7.98 -51.93 -0.41 -0.04 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.61 7.97 -51.93 -0.41 0.19 16 25 H 0.08 1.62 4.53 -51.93 -0.24 1.38 16 26 H 0.06 1.30 6.69 -51.93 -0.35 0.96 16 27 H 0.29 8.24 4.69 -40.82 -0.19 8.05 16 28 H 0.05 0.91 6.75 -51.93 -0.35 0.56 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.59 4.47 -51.93 -0.23 1.36 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 2.09 4.81 -51.93 -0.25 1.84 16 35 H 0.01 0.21 7.97 -51.93 -0.41 -0.21 16 36 H 0.07 1.86 5.89 -51.93 -0.31 1.55 16 37 H 0.05 1.29 7.60 -51.93 -0.39 0.89 16 38 H 0.08 1.95 6.62 -51.93 -0.34 1.61 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -27.62 273.57 -6.89 -34.51 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.01 Total: 4.72 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 0.92 Total: -15.92 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.63 Total: -36.77 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.31 Total: -9.71 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.97 Total: 19.05 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.62 -6.89 -34.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.377 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds