Wall clock time and date at job start Mon Mar 30 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48555 * 110.99922 * 2 1 4 4 C 1.54386 * 104.59300 * 200.95684 * 3 2 1 5 5 C 1.54262 * 105.05867 * 23.85308 * 4 3 2 6 6 C 1.50694 * 110.32369 * 118.89544 * 5 4 3 7 7 H 1.08009 * 120.00451 * 7.80273 * 6 5 4 8 8 C 1.37878 * 120.00282 * 187.80409 * 6 5 4 9 9 N 1.31513 * 119.99516 * 1.45392 * 8 6 5 10 10 Si 1.86798 * 120.00203 * 181.17650 * 8 6 5 11 11 H 1.48499 * 109.46927 * 270.27428 * 10 8 6 12 12 H 1.48500 * 109.47267 * 30.27482 * 10 8 6 13 13 H 1.48506 * 109.47204 * 150.27648 * 10 8 6 14 14 O 1.42901 * 110.32167 * 241.00218 * 5 4 3 15 15 C 1.42900 * 113.99867 * 291.14846 * 14 5 4 16 16 C 1.53000 * 109.46875 * 53.91082 * 15 14 5 17 17 C 1.52996 * 109.47119 * 173.90805 * 15 14 5 18 18 C 1.53002 * 109.47240 * 293.91090 * 15 14 5 19 19 C 1.48718 * 111.01341 * 244.48691 * 2 1 3 20 20 H 1.09004 * 109.47271 * 60.12292 * 1 2 3 21 21 H 1.08994 * 109.47605 * 180.12642 * 1 2 3 22 22 H 1.09006 * 109.47580 * 300.12999 * 1 2 3 23 23 H 1.08999 * 110.41494 * 82.18425 * 3 2 1 24 24 H 1.08993 * 110.51463 * 319.78732 * 3 2 1 25 25 H 1.08998 * 110.32143 * 264.95480 * 4 3 2 26 26 H 1.08998 * 110.32292 * 142.74969 * 4 3 2 27 27 H 0.96999 * 120.00444 * 353.62525 * 9 8 6 28 28 H 1.08997 * 109.47345 * 57.84953 * 16 15 14 29 29 H 1.09001 * 109.46764 * 177.84259 * 16 15 14 30 30 H 1.08995 * 109.47049 * 297.84062 * 16 15 14 31 31 H 1.09007 * 109.47075 * 59.99984 * 17 15 14 32 32 H 1.08994 * 109.47293 * 180.02562 * 17 15 14 33 33 H 1.08997 * 109.47322 * 300.00419 * 17 15 14 34 34 H 1.09003 * 109.46956 * 80.42954 * 18 15 14 35 35 H 1.08997 * 109.46739 * 200.43068 * 18 15 14 36 36 H 1.08998 * 109.46817 * 320.42958 * 18 15 14 37 37 H 1.08998 * 110.38822 * 40.25256 * 19 2 1 38 38 H 1.08996 * 110.51349 * 277.75039 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0540 -1.3584 6 6 3.7895 0.2354 -2.7962 7 1 4.1156 1.2238 -3.0848 8 6 3.6900 -0.7616 -3.7434 9 7 3.2656 -1.9573 -3.3974 10 14 4.1506 -0.4117 -5.5196 11 1 2.9546 0.0721 -6.2550 12 1 5.2108 0.6273 -5.5607 13 1 4.6525 -1.6565 -6.1553 14 8 4.3693 -0.9910 -0.8047 15 6 5.7390 -0.6125 -0.9548 16 6 5.9446 0.7935 -0.3876 17 6 6.6275 -1.6024 -0.1988 18 6 6.1114 -0.6232 -2.4388 19 6 2.0023 -0.5980 -1.2529 20 1 -0.3634 0.5119 -0.8911 21 1 -0.3634 -1.0276 0.0023 22 1 -0.3634 0.5159 0.8888 23 1 2.0079 1.7916 1.0120 24 1 1.4104 2.0228 -0.6591 25 1 4.1482 1.1748 0.2935 26 1 3.6937 2.0995 -1.1698 27 1 3.1109 -2.1654 -2.4627 28 1 5.6432 0.8105 0.6598 29 1 6.9967 1.0671 -0.4672 30 1 5.3406 1.5046 -0.9511 31 1 6.4810 -2.6041 -0.6029 32 1 7.6722 -1.3134 -0.3130 33 1 6.3622 -1.5947 0.8583 34 1 5.7639 0.2976 -2.9073 35 1 7.1941 -0.6968 -2.5411 36 1 5.6415 -1.4781 -2.9251 37 1 1.4105 -0.2753 -2.1095 38 1 2.0107 -1.6857 -1.1836 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:45 Heat of formation + Delta-G solvation = -33.641654 kcal Electronic energy + Delta-G solvation = -17964.040449 eV Core-core repulsion = 15421.012431 eV Total energy + Delta-G solvation = -2543.028018 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99242 -38.24280 -35.02207 -33.67477 -32.41557 -29.08692 -28.51671 -28.20118 -26.73372 -24.98194 -21.96555 -21.61936 -20.72275 -18.97210 -16.96465 -16.42895 -16.12201 -15.88006 -15.58023 -15.23905 -14.98652 -14.60790 -14.01530 -13.86235 -13.50893 -13.23621 -13.14962 -12.78121 -12.72466 -12.53564 -12.47163 -12.25290 -12.03653 -11.99305 -11.87348 -11.60482 -11.15193 -10.93622 -10.69993 -10.16767 -9.77282 -9.38139 -8.39855 -6.12806 1.51811 1.57154 1.73432 2.56503 3.13340 3.22266 3.46716 4.00381 4.06687 4.24801 4.30621 4.37183 4.49235 4.51297 4.54896 4.69736 4.76236 4.81388 4.88204 4.88455 4.92431 4.98679 5.03527 5.13945 5.19468 5.30216 5.30628 5.36894 5.51516 5.70826 5.79682 6.02586 6.08801 6.15335 6.33119 6.72660 7.16296 7.61088 8.93430 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.015021 C = 0.010592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.536842 B = 1863.612784 C = 2642.978510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.035 3.965 4 C -0.148 4.148 5 C 0.217 3.783 6 C -0.611 4.611 7 H 0.047 0.953 8 C 0.007 3.993 9 N -0.925 5.925 10 Si 1.085 2.915 11 H -0.281 1.281 12 H -0.267 1.267 13 H -0.289 1.289 14 O -0.404 6.404 15 C 0.117 3.883 16 C -0.171 4.171 17 C -0.131 4.131 18 C -0.156 4.156 19 C 0.072 3.928 20 H 0.021 0.979 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.036 0.964 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.274 0.726 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.025 0.975 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 5.941 5.252 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.255 5.255 3 C -0.093 4.093 4 C -0.185 4.185 5 C 0.179 3.821 6 C -0.649 4.649 7 H 0.065 0.935 8 C -0.196 4.196 9 N -0.563 5.563 10 Si 0.909 3.091 11 H -0.207 1.207 12 H -0.191 1.191 13 H -0.215 1.215 14 O -0.325 6.325 15 C 0.078 3.922 16 C -0.228 4.228 17 C -0.188 4.188 18 C -0.214 4.214 19 C -0.056 4.056 20 H 0.039 0.961 21 H 0.083 0.917 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.035 4.816 4.336 6.793 hybrid contribution -0.548 0.941 0.352 1.144 sum 1.487 5.757 4.688 7.572 Atomic orbital electron populations 1.22522 0.87646 1.02069 1.01038 1.65422 1.08791 1.15915 1.35400 1.23140 0.95839 0.89445 1.00865 1.23573 0.96417 0.98526 0.99992 1.19784 0.85613 0.85534 0.91213 1.22347 1.50438 0.98163 0.93907 0.93503 1.26512 0.92954 0.92912 1.07266 1.70736 1.41404 1.22664 1.21539 0.83410 0.77214 0.75926 0.72532 1.20708 1.19119 1.21529 1.87804 1.15275 1.49501 1.79923 1.21171 0.82442 0.94165 0.94470 1.22891 1.01978 0.97556 1.00339 1.21767 0.98937 0.98302 0.99770 1.22737 0.97399 1.03758 0.97478 1.22917 0.95909 0.97904 0.88833 0.96070 0.91739 0.89327 0.89006 0.94560 0.89210 0.91903 0.91273 0.92213 0.91605 0.91400 0.94108 0.89737 0.92287 0.90727 0.94635 0.94248 0.95678 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.53 127.69 1.22 1.74 16 2 N -0.53 -21.53 5.66 -907.20 -5.13 -26.66 16 3 C 0.03 1.27 6.49 86.45 0.56 1.83 16 4 C -0.15 -5.94 4.25 31.49 0.13 -5.81 16 5 C 0.22 10.41 0.53 -10.64 -0.01 10.41 16 6 C -0.61 -31.33 4.12 25.60 0.11 -31.22 16 7 H 0.05 2.41 7.00 -2.91 -0.02 2.39 16 8 C 0.01 0.35 2.94 84.65 0.25 0.60 16 9 N -0.93 -54.00 12.88 21.45 0.28 -53.73 16 10 Si 1.08 48.63 29.24 68.60 2.01 50.64 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 O -0.40 -19.99 8.92 -148.98 -1.33 -21.32 16 15 C 0.12 4.86 1.11 -10.79 -0.01 4.84 16 16 C -0.17 -6.02 6.73 71.98 0.48 -5.54 16 17 C -0.13 -4.61 8.75 71.98 0.63 -3.98 16 18 C -0.16 -6.94 6.73 71.98 0.48 -6.45 16 19 C 0.07 3.53 4.42 86.42 0.38 3.91 16 20 H 0.02 0.69 7.98 -2.38 -0.02 0.68 16 21 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 23 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.04 1.29 7.97 -2.39 -0.02 1.27 16 25 H 0.09 3.42 4.53 -2.39 -0.01 3.41 16 26 H 0.06 2.50 6.69 -2.39 -0.02 2.49 16 27 H 0.27 16.47 4.69 -92.71 -0.43 16.04 16 28 H 0.06 1.98 6.75 -2.39 -0.02 1.96 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.56 4.47 -2.39 -0.01 2.55 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 3.46 4.81 -2.39 -0.01 3.45 16 35 H 0.03 1.35 7.97 -2.39 -0.02 1.33 16 36 H 0.04 2.00 5.89 -2.39 -0.01 1.99 16 37 H 0.02 1.31 7.60 -2.39 -0.02 1.30 16 38 H 0.05 2.51 6.62 -2.39 -0.02 2.49 16 Total: -1.00 -59.98 273.57 1.41 -58.57 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.36 Total: 22.16 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 4.23 Total: -29.67 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -4.86 Total: -80.39 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.33 Total: -21.32 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.01 Total: 50.64 kcal Total: -59.98 1.41 -58.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.931 kcal (2) G-P(sol) polarization free energy of solvation -59.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds