Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47281 * 2 1 4 4 C 1.52999 * 109.46993 * 239.99978 * 2 1 3 5 5 O 1.42900 * 109.46797 * 120.00188 * 2 1 3 6 6 C 1.42900 * 114.00437 * 67.72017 * 5 2 1 7 7 C 1.50704 * 109.49816 * 316.01256 * 6 5 2 8 8 H 1.08005 * 119.99488 * 113.88295 * 7 6 5 9 9 C 1.37869 * 120.00007 * 293.87313 * 7 6 5 10 10 N 1.31519 * 119.99831 * 175.60387 * 9 7 6 11 11 Si 1.86800 * 120.00306 * 355.61098 * 9 7 6 12 12 H 1.48500 * 109.46900 * 274.94672 * 11 9 7 13 13 H 1.48506 * 109.47121 * 34.94541 * 11 9 7 14 14 H 1.48497 * 109.47465 * 154.94867 * 11 9 7 15 15 C 1.53113 * 109.50583 * 195.93465 * 6 5 2 16 16 C 1.53126 * 109.16105 * 297.67372 * 15 6 5 17 17 C 1.53041 * 109.27545 * 302.34411 * 16 15 6 18 18 N 1.46851 * 109.52106 * 59.18045 * 17 16 15 19 19 C 1.46849 * 111.19839 * 298.25308 * 18 17 16 20 20 H 1.08993 * 109.47250 * 281.49749 * 1 2 3 21 21 H 1.08998 * 109.46934 * 41.49969 * 1 2 3 22 22 H 1.09007 * 109.46985 * 161.49734 * 1 2 3 23 23 H 1.08994 * 109.47566 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46966 * 300.00046 * 3 2 1 25 25 H 1.09009 * 109.47058 * 59.99547 * 3 2 1 26 26 H 1.08998 * 109.47248 * 314.68136 * 4 2 1 27 27 H 1.08999 * 109.47452 * 74.68671 * 4 2 1 28 28 H 1.09005 * 109.47161 * 194.68881 * 4 2 1 29 29 H 0.97004 * 119.99935 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.52271 * 57.57209 * 15 6 5 31 31 H 1.09000 * 109.52936 * 177.76470 * 15 6 5 32 32 H 1.08996 * 109.50340 * 62.28249 * 16 15 6 33 33 H 1.08996 * 109.50357 * 182.40731 * 16 15 6 34 34 H 1.08997 * 109.45948 * 179.19550 * 17 16 15 35 35 H 1.08994 * 109.46210 * 299.16529 * 17 16 15 36 36 H 1.00902 * 110.99675 * 174.16016 * 18 17 16 37 37 H 1.08996 * 109.46559 * 301.73552 * 19 18 17 38 38 H 1.08997 * 109.46349 * 181.76082 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.7334 -2.0763 1.1803 7 6 0.3167 -2.3176 0.7263 8 1 0.1282 -2.8371 -0.2016 9 6 -0.7384 -1.8752 1.4955 10 7 -1.9718 -2.0084 1.0588 11 14 -0.4164 -1.0866 3.1580 12 1 -0.2928 -2.1450 4.1923 13 1 0.8438 -0.3031 3.0984 14 1 -1.5440 -0.1847 3.5049 15 6 1.9144 -2.6187 2.6006 16 6 3.3709 -2.4238 3.0312 17 6 4.2914 -3.1325 2.0350 18 7 4.0808 -2.5776 0.6918 19 6 2.7014 -2.7951 0.2377 20 1 -0.3633 0.2048 1.0070 21 1 -0.3633 0.7697 -0.6809 22 1 -0.3633 -0.9746 -0.3261 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.4798 -1.6458 -1.3892 27 1 1.9052 -0.0794 -2.1199 28 1 3.0983 -0.9525 -1.1287 29 1 -2.7143 -1.6975 1.6002 30 1 1.2575 -2.0792 3.2830 31 1 1.6680 -3.6804 2.6194 32 1 3.6055 -1.3596 3.0499 33 1 3.5162 -2.8467 4.0253 34 1 5.3299 -2.9836 2.3308 35 1 4.0655 -4.1988 2.0269 36 1 4.7428 -2.9615 0.0341 37 1 2.4829 -3.8629 0.2381 38 1 2.5850 -2.4011 -0.7719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259884091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = 6.914440 kcal Electronic energy + Delta-G solvation = -18322.443313 eV Core-core repulsion = 15781.173939 eV Total energy + Delta-G solvation = -2541.269374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34410 -36.25871 -33.10421 -32.32506 -30.87984 -29.63645 -26.73149 -26.41017 -24.26097 -23.03930 -21.13210 -19.59707 -18.32363 -16.87979 -16.00812 -14.84763 -14.54118 -14.16002 -14.06682 -13.54650 -13.30204 -12.87624 -12.53519 -12.26157 -12.19406 -11.77611 -11.48338 -11.31421 -11.11278 -10.89361 -10.57540 -10.34030 -10.18114 -10.15201 -9.98809 -9.77549 -9.23896 -9.03292 -8.60669 -8.01206 -7.94079 -7.61351 -6.19594 -4.12294 3.31980 3.44850 3.61796 4.41690 4.80357 5.00194 5.27089 5.54215 5.63888 5.84917 5.91132 5.94328 6.04193 6.21162 6.23214 6.28275 6.34431 6.38688 6.49033 6.53339 6.57779 6.65589 6.73368 6.77746 6.90202 7.02112 7.05312 7.19458 7.34516 7.46815 7.57314 7.75024 8.00224 8.09666 8.34461 8.77560 8.95290 9.44837 10.89335 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.017276 C = 0.013072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.713242 B = 1620.339643 C = 2141.479320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 C -0.136 4.136 4 C -0.173 4.173 5 O -0.374 6.374 6 C 0.219 3.781 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.095 3.905 10 N -0.886 5.886 11 Si 0.884 3.116 12 H -0.292 1.292 13 H -0.234 1.234 14 H -0.307 1.307 15 C -0.113 4.113 16 C -0.116 4.116 17 C 0.066 3.934 18 N -0.681 5.681 19 C 0.015 3.985 20 H 0.041 0.959 21 H 0.008 0.992 22 H 0.132 0.868 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.266 0.734 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.325 0.675 37 H 0.019 0.981 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 0.851 -0.684 8.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.093 3.907 3 C -0.193 4.193 4 C -0.230 4.230 5 O -0.294 6.294 6 C 0.181 3.819 7 C -0.587 4.587 8 H 0.096 0.904 9 C -0.110 4.110 10 N -0.523 5.523 11 Si 0.716 3.284 12 H -0.221 1.221 13 H -0.158 1.158 14 H -0.236 1.236 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.064 4.064 18 N -0.310 5.310 19 C -0.113 4.113 20 H 0.060 0.940 21 H 0.026 0.974 22 H 0.150 0.850 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.141 0.859 37 H 0.038 0.962 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.602 1.610 -0.284 8.756 hybrid contribution -0.194 -0.762 0.645 1.018 sum 8.408 0.848 0.361 8.458 Atomic orbital electron populations 1.23441 0.94896 1.04681 0.99592 1.20846 0.93934 0.90161 0.85754 1.21809 1.00656 0.96098 1.00765 1.22891 1.01265 1.01131 0.97735 1.87860 1.79794 1.21742 1.40003 1.19148 0.92686 0.79539 0.90565 1.21075 0.88579 1.39867 1.09181 0.90384 1.24889 0.94809 0.93666 0.97639 1.69919 0.98558 1.45824 1.37974 0.87124 0.78262 0.79554 0.83499 1.22051 1.15822 1.23616 1.21958 0.94808 1.00399 0.97831 1.21569 0.95850 1.01569 0.96429 1.21806 0.98555 0.95376 0.90645 1.60271 1.05448 1.62539 1.02768 1.23470 0.87409 0.97992 1.02433 0.94041 0.97351 0.85012 0.93021 0.92693 0.93156 0.90658 0.94367 0.91783 0.92393 0.92949 0.91786 0.90865 0.93298 0.92148 0.96316 0.85923 0.96244 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 6.63 37.16 0.25 -3.76 16 2 C 0.13 2.84 1.11 -90.62 -0.10 2.74 16 3 C -0.14 -2.52 8.71 37.15 0.32 -2.20 16 4 C -0.17 -3.31 6.65 37.16 0.25 -3.06 16 5 O -0.37 -8.73 7.03 -35.23 -0.25 -8.98 16 6 C 0.22 5.03 0.26 -91.69 -0.02 5.00 16 7 C -0.55 -14.23 4.57 -34.44 -0.16 -14.39 16 8 H 0.08 2.17 7.43 -52.48 -0.39 1.78 16 9 C 0.09 2.56 2.99 -17.82 -0.05 2.51 16 10 N -0.89 -25.29 13.51 55.43 0.75 -24.54 16 11 Si 0.88 22.40 21.38 -169.99 -3.63 18.76 16 12 H -0.29 -7.32 6.92 56.52 0.39 -6.93 16 13 H -0.23 -5.93 5.69 56.52 0.32 -5.61 16 14 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 15 C -0.11 -2.52 4.17 -26.61 -0.11 -2.63 16 16 C -0.12 -2.20 5.94 -26.64 -0.16 -2.36 16 17 C 0.07 1.10 6.55 -3.83 -0.03 1.07 16 18 N -0.68 -11.96 6.61 -113.81 -0.75 -12.71 16 19 C 0.02 0.30 4.45 -3.83 -0.02 0.28 16 20 H 0.04 1.04 4.40 -51.93 -0.23 0.82 16 21 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 16 22 H 0.13 3.44 3.87 -51.93 -0.20 3.24 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 25 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.07 1.54 4.89 -51.93 -0.25 1.28 16 27 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 28 H 0.06 1.17 6.54 -51.93 -0.34 0.83 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.05 1.25 2.31 -51.93 -0.12 1.13 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.48 7.80 -51.93 -0.40 1.08 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.32 4.79 8.90 -39.29 -0.35 4.44 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 2.06 3.19 -51.93 -0.17 1.89 16 LS Contribution 259.08 15.07 3.90 3.90 Total: -1.00 -28.07 259.08 -5.71 -33.78 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.89 Total: 6.56 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 0.17 Total: -16.78 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.00 Total: -37.25 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.25 Total: -8.98 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -3.63 Total: 18.76 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.07 -5.71 -33.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.693 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds