Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47281 * 2 1 4 4 C 1.52999 * 109.46993 * 239.99978 * 2 1 3 5 5 O 1.42900 * 109.46797 * 120.00188 * 2 1 3 6 6 C 1.42900 * 114.00437 * 67.72017 * 5 2 1 7 7 C 1.50704 * 109.49816 * 316.01256 * 6 5 2 8 8 H 1.08005 * 119.99488 * 113.88295 * 7 6 5 9 9 C 1.37869 * 120.00007 * 293.87313 * 7 6 5 10 10 N 1.31519 * 119.99831 * 175.60387 * 9 7 6 11 11 Si 1.86800 * 120.00306 * 355.61098 * 9 7 6 12 12 H 1.48500 * 109.46900 * 274.94672 * 11 9 7 13 13 H 1.48506 * 109.47121 * 34.94541 * 11 9 7 14 14 H 1.48497 * 109.47465 * 154.94867 * 11 9 7 15 15 C 1.53113 * 109.50583 * 195.93465 * 6 5 2 16 16 C 1.53126 * 109.16105 * 297.67372 * 15 6 5 17 17 C 1.53041 * 109.27545 * 302.34411 * 16 15 6 18 18 N 1.46851 * 109.52106 * 59.18045 * 17 16 15 19 19 C 1.46849 * 111.19839 * 298.25308 * 18 17 16 20 20 H 1.08993 * 109.47250 * 281.49749 * 1 2 3 21 21 H 1.08998 * 109.46934 * 41.49969 * 1 2 3 22 22 H 1.09007 * 109.46985 * 161.49734 * 1 2 3 23 23 H 1.08994 * 109.47566 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46966 * 300.00046 * 3 2 1 25 25 H 1.09009 * 109.47058 * 59.99547 * 3 2 1 26 26 H 1.08998 * 109.47248 * 314.68136 * 4 2 1 27 27 H 1.08999 * 109.47452 * 74.68671 * 4 2 1 28 28 H 1.09005 * 109.47161 * 194.68881 * 4 2 1 29 29 H 0.97004 * 119.99935 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.52271 * 57.57209 * 15 6 5 31 31 H 1.09000 * 109.52936 * 177.76470 * 15 6 5 32 32 H 1.08996 * 109.50340 * 62.28249 * 16 15 6 33 33 H 1.08996 * 109.50357 * 182.40731 * 16 15 6 34 34 H 1.08997 * 109.45948 * 179.19550 * 17 16 15 35 35 H 1.08994 * 109.46210 * 299.16529 * 17 16 15 36 36 H 1.00902 * 110.99675 * 174.16016 * 18 17 16 37 37 H 1.08996 * 109.46559 * 301.73552 * 19 18 17 38 38 H 1.08997 * 109.46349 * 181.76082 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.7334 -2.0763 1.1803 7 6 0.3167 -2.3176 0.7263 8 1 0.1282 -2.8371 -0.2016 9 6 -0.7384 -1.8752 1.4955 10 7 -1.9718 -2.0084 1.0588 11 14 -0.4164 -1.0866 3.1580 12 1 -0.2928 -2.1450 4.1923 13 1 0.8438 -0.3031 3.0984 14 1 -1.5440 -0.1847 3.5049 15 6 1.9144 -2.6187 2.6006 16 6 3.3709 -2.4238 3.0312 17 6 4.2914 -3.1325 2.0350 18 7 4.0808 -2.5776 0.6918 19 6 2.7014 -2.7951 0.2377 20 1 -0.3633 0.2048 1.0070 21 1 -0.3633 0.7697 -0.6809 22 1 -0.3633 -0.9746 -0.3261 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.4798 -1.6458 -1.3892 27 1 1.9052 -0.0794 -2.1199 28 1 3.0983 -0.9525 -1.1287 29 1 -2.7143 -1.6975 1.6002 30 1 1.2575 -2.0792 3.2830 31 1 1.6680 -3.6804 2.6194 32 1 3.6055 -1.3596 3.0499 33 1 3.5162 -2.8467 4.0253 34 1 5.3299 -2.9836 2.3308 35 1 4.0655 -4.1988 2.0269 36 1 4.7428 -2.9615 0.0341 37 1 2.4829 -3.8629 0.2381 38 1 2.5850 -2.4011 -0.7719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259884091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = -13.988800 kcal Electronic energy + Delta-G solvation = -18323.349745 eV Core-core repulsion = 15781.173939 eV Total energy + Delta-G solvation = -2542.175807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05769 -37.81560 -35.04778 -34.06193 -32.44866 -31.36302 -28.54752 -27.93994 -26.08247 -24.63795 -22.78341 -21.25892 -20.06020 -18.71945 -17.79514 -16.51477 -16.26271 -15.86221 -15.72322 -15.30297 -14.93407 -14.57323 -14.29769 -13.94612 -13.81453 -13.49145 -13.13098 -12.79360 -12.74195 -12.49809 -12.34490 -12.14119 -12.02574 -12.01751 -11.71786 -11.54128 -10.94295 -10.80219 -10.40915 -9.98486 -9.72528 -9.09978 -8.32408 -6.22761 1.26811 1.37059 1.56067 2.33630 2.99216 3.36978 3.58029 4.05015 4.18362 4.26319 4.34618 4.38655 4.55991 4.59490 4.66190 4.79646 4.82500 4.89717 4.93931 4.96628 5.04605 5.08430 5.12812 5.19242 5.27378 5.30561 5.42754 5.49807 5.59744 5.64867 5.81972 6.06274 6.21874 6.34503 6.68446 6.75366 7.14712 7.36437 8.79880 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.017276 C = 0.013072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.713242 B = 1620.339643 C = 2141.479320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 C -0.130 4.130 4 C -0.164 4.164 5 O -0.383 6.383 6 C 0.215 3.785 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.062 3.938 10 N -0.923 5.923 11 Si 0.926 3.074 12 H -0.291 1.291 13 H -0.233 1.233 14 H -0.319 1.319 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.066 3.934 18 N -0.682 5.682 19 C 0.023 3.977 20 H 0.018 0.982 21 H 0.022 0.978 22 H 0.102 0.898 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.025 0.975 36 H 0.345 0.655 37 H 0.011 0.989 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.428 1.280 -0.840 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.081 3.919 3 C -0.187 4.187 4 C -0.220 4.220 5 O -0.304 6.304 6 C 0.176 3.824 7 C -0.569 4.569 8 H 0.068 0.932 9 C -0.139 4.139 10 N -0.563 5.563 11 Si 0.758 3.242 12 H -0.219 1.219 13 H -0.157 1.157 14 H -0.249 1.249 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.063 4.063 18 N -0.313 5.313 19 C -0.106 4.106 20 H 0.037 0.963 21 H 0.041 0.959 22 H 0.121 0.879 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.164 0.836 37 H 0.029 0.971 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.259 2.030 -0.444 11.449 hybrid contribution -1.012 -0.901 0.635 1.496 sum 10.247 1.129 0.190 10.311 Atomic orbital electron populations 1.23273 0.97012 1.03424 0.98321 1.21111 0.92351 0.92194 0.86208 1.21773 1.01522 0.93847 1.01596 1.22742 1.01429 1.00431 0.97445 1.87832 1.79640 1.21655 1.41247 1.19158 0.91496 0.80004 0.91694 1.21235 0.90448 1.37793 1.07470 0.93204 1.25287 0.94706 0.94389 0.99487 1.70012 0.99243 1.48059 1.38963 0.86472 0.77432 0.78735 0.81545 1.21946 1.15725 1.24885 1.21989 0.97173 0.99695 0.97071 1.21546 0.93638 1.01328 0.98476 1.21861 0.99712 0.95290 0.89418 1.60178 1.04272 1.63056 1.03805 1.23234 0.88464 0.96926 1.01943 0.96277 0.95877 0.87921 0.91589 0.90352 0.93946 0.92600 0.92056 0.90553 0.92744 0.94883 0.92227 0.92123 0.90899 0.88935 0.95650 0.83635 0.97128 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.70 6.63 71.98 0.48 -7.23 16 2 C 0.12 4.96 1.11 -10.80 -0.01 4.95 16 3 C -0.13 -4.44 8.71 71.98 0.63 -3.82 16 4 C -0.16 -5.88 6.65 71.98 0.48 -5.40 16 5 O -0.38 -17.33 7.03 -148.98 -1.05 -18.38 16 6 C 0.22 9.68 0.26 -11.49 0.00 9.68 16 7 C -0.53 -27.96 4.57 25.60 0.12 -27.84 16 8 H 0.05 2.86 7.43 -2.91 -0.02 2.84 16 9 C 0.06 3.43 2.99 84.65 0.25 3.68 16 10 N -0.92 -54.46 13.51 21.45 0.29 -54.17 16 11 Si 0.93 47.09 21.38 68.60 1.47 48.56 16 12 H -0.29 -14.49 6.92 99.48 0.69 -13.81 16 13 H -0.23 -11.70 5.69 99.48 0.57 -11.13 16 14 H -0.32 -16.58 7.11 99.48 0.71 -15.87 16 15 C -0.12 -5.31 4.17 30.67 0.13 -5.18 16 16 C -0.11 -3.92 5.94 30.65 0.18 -3.74 16 17 C 0.07 1.96 6.55 86.33 0.57 2.53 16 18 N -0.68 -21.61 6.61 -514.00 -3.40 -25.01 16 19 C 0.02 0.88 4.45 86.33 0.38 1.26 16 20 H 0.02 0.95 4.40 -2.39 -0.01 0.94 16 21 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 22 H 0.10 5.46 3.87 -2.38 -0.01 5.45 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.08 2.28 8.13 -2.39 -0.02 2.27 16 25 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.06 2.23 4.89 -2.39 -0.01 2.22 16 27 H 0.06 1.90 8.06 -2.39 -0.02 1.88 16 28 H 0.08 2.56 6.54 -2.38 -0.02 2.54 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.03 1.56 2.31 -2.38 -0.01 1.56 16 31 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.28 7.80 -2.39 -0.02 2.27 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.35 8.80 8.90 -89.69 -0.80 8.00 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.11 4.12 3.19 -2.39 -0.01 4.11 16 Total: -1.00 -60.71 259.08 0.61 -60.11 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.10 Total: 20.00 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.20 Total: -31.10 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -3.11 Total: -79.18 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.05 Total: -18.38 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.47 Total: 48.56 kcal Total: -60.71 0.61 -60.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.117 kcal (2) G-P(sol) polarization free energy of solvation -60.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds