Wall clock time and date at job start Mon Mar 30 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46774 * 2 1 4 4 H 1.09001 * 109.90384 * 304.23857 * 3 2 1 5 5 N 1.47899 * 109.91722 * 65.34623 * 3 2 1 6 6 C 1.46901 * 110.99717 * 265.19319 * 5 3 2 7 7 C 1.53004 * 109.46834 * 171.37935 * 6 5 3 8 8 C 1.52998 * 109.47548 * 291.37910 * 6 5 3 9 9 C 1.48811 * 105.67635 * 144.54724 * 5 3 2 10 10 C 1.54936 * 103.34906 * 321.02095 * 9 5 3 11 11 C 1.53996 * 109.91479 * 183.14050 * 3 2 1 12 12 O 1.42897 * 110.30627 * 120.50184 * 11 3 2 13 13 C 1.50701 * 110.30754 * 358.43777 * 11 3 2 14 14 H 1.08002 * 120.00612 * 359.97438 * 13 11 3 15 15 C 1.37879 * 119.99784 * 179.97438 * 13 11 3 16 16 N 1.31516 * 120.00010 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00084 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47156 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47241 * 120.00079 * 17 15 13 20 20 H 1.48503 * 109.46717 * 240.00260 * 17 15 13 21 21 H 1.09000 * 109.47064 * 52.96806 * 1 2 3 22 22 H 1.09000 * 109.47286 * 292.96024 * 1 2 3 23 23 H 1.08999 * 109.46781 * 172.96170 * 1 2 3 24 24 H 1.08998 * 109.47349 * 119.99642 * 2 1 3 25 25 H 1.08997 * 109.47437 * 239.99828 * 2 1 3 26 26 H 1.09000 * 109.46823 * 51.38502 * 6 5 3 27 27 H 1.09001 * 109.47193 * 60.00152 * 7 6 5 28 28 H 1.08996 * 109.47022 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47099 * 300.00212 * 7 6 5 30 30 H 1.08993 * 109.47110 * 172.39577 * 8 6 5 31 31 H 1.09005 * 109.46964 * 292.40216 * 8 6 5 32 32 H 1.08997 * 109.47170 * 52.39526 * 8 6 5 33 33 H 1.08999 * 110.69725 * 202.50357 * 9 5 3 34 34 H 1.08998 * 110.66500 * 79.52092 * 9 5 3 35 35 H 1.08994 * 110.72817 * 278.95416 * 10 9 5 36 36 H 1.09004 * 110.87958 * 155.73693 * 10 9 5 37 37 H 0.96697 * 113.99985 * 179.97438 * 12 11 3 38 38 H 0.96997 * 119.99780 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6200 1.9846 -0.8473 5 7 1.6610 2.1109 1.2638 6 6 0.4065 2.8592 1.1079 7 6 -0.0649 3.3551 2.4764 8 6 0.6380 4.0563 0.1836 9 6 2.7922 3.0202 1.5927 10 6 4.0418 2.1942 1.1969 11 6 3.5778 1.4553 -0.0793 12 8 4.0085 2.1606 -1.2451 13 6 4.1125 0.0464 -0.0942 14 1 3.4310 -0.7904 -0.0511 15 6 5.4717 -0.1744 -0.1627 16 7 6.3016 0.8445 -0.2157 17 14 6.1346 -1.9208 -0.1804 18 1 5.0033 -2.8803 -0.1117 19 1 6.9008 -2.1468 -1.4322 20 1 7.0266 -2.1234 0.9895 21 1 -0.3633 0.6189 -0.8204 22 1 -0.3634 0.4009 0.9462 23 1 -0.3633 -1.0199 -0.1259 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 -0.3535 2.2081 0.6759 27 1 0.6952 4.0061 2.9085 28 1 -0.9959 3.9099 2.3609 29 1 -0.2298 2.5023 3.1349 30 1 -0.3166 4.5323 -0.0404 31 1 1.2952 4.7734 0.6756 32 1 1.1005 3.7159 -0.7428 33 1 2.8045 3.2500 2.6581 34 1 2.7337 3.9355 1.0037 35 1 4.2990 1.4834 1.9821 36 1 4.8864 2.8479 0.9785 37 1 4.9691 2.2015 -1.3476 38 1 7.2579 0.6891 -0.2635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:19 Heat of formation + Delta-G solvation = -46.891581 kcal Electronic energy + Delta-G solvation = -17554.476059 eV Core-core repulsion = 15010.873481 eV Total energy + Delta-G solvation = -2543.602578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20138 -35.55998 -33.06824 -32.02117 -31.82190 -27.90956 -27.28645 -26.84168 -24.33250 -22.68067 -20.74053 -19.28547 -18.68387 -16.48468 -15.63686 -14.90363 -14.55538 -14.28480 -13.98105 -13.58330 -13.19281 -12.89310 -12.38847 -12.16926 -11.99953 -11.63919 -11.58493 -11.28885 -11.09951 -10.95578 -10.82629 -10.72196 -10.42366 -10.29463 -10.18606 -9.91159 -9.70518 -9.45985 -8.94358 -8.49161 -7.96757 -7.60453 -6.13458 -4.17944 3.25785 3.34547 3.38671 4.37049 4.64962 5.13390 5.26036 5.46294 5.63711 5.67133 5.82868 5.86603 5.92829 6.00658 6.03148 6.10960 6.20748 6.23626 6.34584 6.37559 6.39834 6.49692 6.63114 6.66767 6.73011 6.92843 6.99652 7.14216 7.31295 7.43181 7.59050 7.78721 7.88288 7.99854 8.25301 8.83545 9.49115 9.60106 10.94592 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.009727 C = 0.008682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.004238 B = 2877.940072 C = 3224.343050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C 0.083 3.917 4 H 0.045 0.955 5 N -0.502 5.502 6 C 0.058 3.942 7 C -0.137 4.137 8 C -0.186 4.186 9 C 0.025 3.975 10 C -0.119 4.119 11 C 0.247 3.753 12 O -0.596 6.596 13 C -0.532 4.532 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.383 0.617 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 3.145 2.484 9.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.129 4.129 3 C -0.025 4.025 4 H 0.063 0.937 5 N -0.227 5.227 6 C -0.051 4.051 7 C -0.194 4.194 8 C -0.245 4.245 9 C -0.103 4.103 10 C -0.158 4.158 11 C 0.207 3.793 12 O -0.406 6.406 13 C -0.570 4.570 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.037 2.864 2.806 9.886 hybrid contribution 1.261 -0.256 -0.517 1.387 sum -7.775 2.609 2.290 8.515 Atomic orbital electron populations 1.21994 0.98374 1.00027 1.00773 1.21496 0.92439 0.96279 1.02645 1.22244 0.96494 0.94342 0.89461 0.93681 1.64950 1.01316 1.25488 1.30901 1.21966 0.94200 0.93803 0.95120 1.21748 0.99911 1.00816 0.96949 1.22492 1.01238 0.99679 1.01066 1.23397 0.92502 0.95251 0.99123 1.22963 0.94515 0.97987 1.00294 1.19343 0.87680 0.90184 0.82064 1.86071 1.29164 1.78350 1.47020 1.22116 0.92055 0.92986 1.49850 0.90378 1.25051 0.97035 0.97254 0.94163 1.69646 1.03147 1.30043 1.51424 0.86468 0.78932 0.84688 0.77491 1.19641 1.21067 1.21071 0.94098 0.92623 0.93933 0.90930 0.91339 0.89916 0.93009 0.93208 0.92245 0.93142 0.92375 0.91887 0.92117 0.94010 0.91683 0.92005 0.76571 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.50 37.16 0.32 -2.21 16 2 C -0.09 -1.83 4.10 -26.73 -0.11 -1.94 16 3 C 0.08 1.78 2.19 -66.64 -0.15 1.63 16 4 H 0.05 1.01 5.86 -51.93 -0.30 0.70 16 5 N -0.50 -9.68 4.72 -214.43 -1.01 -10.69 16 6 C 0.06 0.93 2.47 -67.71 -0.17 0.77 16 7 C -0.14 -1.87 9.26 37.16 0.34 -1.53 16 8 C -0.19 -2.90 8.17 37.16 0.30 -2.60 16 9 C 0.02 0.49 5.59 -1.74 -0.01 0.48 16 10 C -0.12 -2.79 5.50 -24.87 -0.14 -2.93 16 11 C 0.25 6.12 0.99 -90.41 -0.09 6.03 16 12 O -0.60 -15.69 12.93 -35.23 -0.46 -16.14 16 13 C -0.53 -14.04 7.23 -34.44 -0.25 -14.29 16 14 H 0.08 2.02 4.70 -52.49 -0.25 1.78 16 15 C 0.07 1.75 5.26 -17.82 -0.09 1.65 16 16 N -0.90 -24.27 10.88 55.43 0.60 -23.67 16 17 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 22 H 0.05 0.88 6.54 -51.93 -0.34 0.54 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.55 7.24 -51.93 -0.38 1.18 16 25 H 0.07 1.46 6.99 -51.93 -0.36 1.10 16 26 H 0.08 1.30 5.24 -51.93 -0.27 1.03 16 27 H 0.05 0.71 7.33 -51.93 -0.38 0.33 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.90 6.41 -51.93 -0.33 0.57 16 32 H 0.06 1.12 6.30 -51.93 -0.33 0.79 16 33 H 0.06 1.11 7.80 -51.93 -0.41 0.71 16 34 H 0.04 0.82 5.47 -51.93 -0.28 0.54 16 35 H 0.06 1.62 7.86 -51.93 -0.41 1.22 16 36 H 0.06 1.52 8.05 -51.93 -0.42 1.10 16 37 H 0.38 10.29 7.05 45.56 0.32 10.61 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -26.73 280.33 -7.07 -33.80 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.38 Total: 11.59 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.04 Total: -14.93 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.41 Total: -34.36 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.46 Total: -16.14 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.73 -7.07 -33.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.089 kcal (2) G-P(sol) polarization free energy of solvation -26.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds