Wall clock time and date at job start Mon Mar 30 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46774 * 2 1 4 4 H 1.09001 * 109.90384 * 304.23857 * 3 2 1 5 5 N 1.47899 * 109.91722 * 65.34623 * 3 2 1 6 6 C 1.46901 * 110.99717 * 265.19319 * 5 3 2 7 7 C 1.53004 * 109.46834 * 171.37935 * 6 5 3 8 8 C 1.52998 * 109.47548 * 291.37910 * 6 5 3 9 9 C 1.48811 * 105.67635 * 144.54724 * 5 3 2 10 10 C 1.54936 * 103.34906 * 321.02095 * 9 5 3 11 11 C 1.53996 * 109.91479 * 183.14050 * 3 2 1 12 12 O 1.42897 * 110.30627 * 120.50184 * 11 3 2 13 13 C 1.50701 * 110.30754 * 358.43777 * 11 3 2 14 14 H 1.08002 * 120.00612 * 359.97438 * 13 11 3 15 15 C 1.37879 * 119.99784 * 179.97438 * 13 11 3 16 16 N 1.31516 * 120.00010 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00084 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47156 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47241 * 120.00079 * 17 15 13 20 20 H 1.48503 * 109.46717 * 240.00260 * 17 15 13 21 21 H 1.09000 * 109.47064 * 52.96806 * 1 2 3 22 22 H 1.09000 * 109.47286 * 292.96024 * 1 2 3 23 23 H 1.08999 * 109.46781 * 172.96170 * 1 2 3 24 24 H 1.08998 * 109.47349 * 119.99642 * 2 1 3 25 25 H 1.08997 * 109.47437 * 239.99828 * 2 1 3 26 26 H 1.09000 * 109.46823 * 51.38502 * 6 5 3 27 27 H 1.09001 * 109.47193 * 60.00152 * 7 6 5 28 28 H 1.08996 * 109.47022 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47099 * 300.00212 * 7 6 5 30 30 H 1.08993 * 109.47110 * 172.39577 * 8 6 5 31 31 H 1.09005 * 109.46964 * 292.40216 * 8 6 5 32 32 H 1.08997 * 109.47170 * 52.39526 * 8 6 5 33 33 H 1.08999 * 110.69725 * 202.50357 * 9 5 3 34 34 H 1.08998 * 110.66500 * 79.52092 * 9 5 3 35 35 H 1.08994 * 110.72817 * 278.95416 * 10 9 5 36 36 H 1.09004 * 110.87958 * 155.73693 * 10 9 5 37 37 H 0.96697 * 113.99985 * 179.97438 * 12 11 3 38 38 H 0.96997 * 119.99780 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6200 1.9846 -0.8473 5 7 1.6610 2.1109 1.2638 6 6 0.4065 2.8592 1.1079 7 6 -0.0649 3.3551 2.4764 8 6 0.6380 4.0563 0.1836 9 6 2.7922 3.0202 1.5927 10 6 4.0418 2.1942 1.1969 11 6 3.5778 1.4553 -0.0793 12 8 4.0085 2.1606 -1.2451 13 6 4.1125 0.0464 -0.0942 14 1 3.4310 -0.7904 -0.0511 15 6 5.4717 -0.1744 -0.1627 16 7 6.3016 0.8445 -0.2157 17 14 6.1346 -1.9208 -0.1804 18 1 5.0033 -2.8803 -0.1117 19 1 6.9008 -2.1468 -1.4322 20 1 7.0266 -2.1234 0.9895 21 1 -0.3633 0.6189 -0.8204 22 1 -0.3634 0.4009 0.9462 23 1 -0.3633 -1.0199 -0.1259 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 -0.3535 2.2081 0.6759 27 1 0.6952 4.0061 2.9085 28 1 -0.9959 3.9099 2.3609 29 1 -0.2298 2.5023 3.1349 30 1 -0.3166 4.5323 -0.0404 31 1 1.2952 4.7734 0.6756 32 1 1.1005 3.7159 -0.7428 33 1 2.8045 3.2500 2.6581 34 1 2.7337 3.9355 1.0037 35 1 4.2990 1.4834 1.9821 36 1 4.8864 2.8479 0.9785 37 1 4.9691 2.2015 -1.3476 38 1 7.2579 0.6891 -0.2635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:19 Heat of formation + Delta-G solvation = -65.250853 kcal Electronic energy + Delta-G solvation = -17555.272177 eV Core-core repulsion = 15010.873481 eV Total energy + Delta-G solvation = -2544.398696 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84359 -37.31913 -34.66978 -34.03235 -33.46254 -29.60436 -28.90675 -28.06284 -26.19253 -24.26423 -22.34645 -21.05715 -20.24099 -18.42390 -17.23208 -16.88382 -16.15590 -15.94538 -15.70699 -15.06968 -14.73456 -14.36078 -14.02044 -13.68408 -13.47145 -13.23496 -13.21615 -12.96943 -12.68021 -12.60105 -12.31037 -12.23819 -12.22095 -11.85577 -11.77673 -11.61322 -11.44364 -10.99961 -10.85384 -10.49050 -9.97105 -9.14893 -8.15770 -6.26368 1.39564 1.43176 1.53371 2.42142 3.05631 3.19338 3.87885 4.00461 4.23659 4.24556 4.32449 4.44470 4.49740 4.60783 4.67427 4.69636 4.75781 4.77779 4.81701 5.00277 5.03184 5.11346 5.19090 5.26435 5.28862 5.33462 5.44020 5.51395 5.53731 5.62833 5.73281 5.85653 6.13639 6.26981 6.44365 6.79058 7.42630 7.50420 8.90975 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.009727 C = 0.008682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.004238 B = 2877.940072 C = 3224.343050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C 0.089 3.911 4 H 0.036 0.964 5 N -0.503 5.503 6 C 0.053 3.947 7 C -0.130 4.130 8 C -0.181 4.181 9 C 0.035 3.965 10 C -0.113 4.113 11 C 0.229 3.771 12 O -0.605 6.605 13 C -0.549 4.549 14 H 0.078 0.922 15 C 0.021 3.979 16 N -0.921 5.921 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.376 0.624 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 3.130 3.170 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.020 4.020 4 H 0.054 0.946 5 N -0.228 5.228 6 C -0.055 4.055 7 C -0.188 4.188 8 C -0.239 4.239 9 C -0.092 4.092 10 C -0.152 4.152 11 C 0.189 3.811 12 O -0.414 6.414 13 C -0.587 4.587 14 H 0.096 0.904 15 C -0.177 4.177 16 N -0.563 5.563 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.226 0.774 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.929 2.854 3.497 11.825 hybrid contribution 1.840 -0.222 -0.744 1.997 sum -9.089 2.632 2.753 9.855 Atomic orbital electron populations 1.21876 0.95006 1.01551 1.01588 1.21372 0.95355 0.94882 1.00871 1.22133 0.94079 0.95441 0.90324 0.94576 1.64978 1.02310 1.26063 1.29418 1.22158 0.92526 0.93861 0.97000 1.21710 1.01020 1.01015 0.95053 1.22425 1.02468 0.99474 0.99539 1.23292 0.90914 0.94713 1.00283 1.22760 0.95648 0.97571 0.99226 1.19675 0.89999 0.89571 0.81846 1.86072 1.28562 1.78676 1.48104 1.22422 0.92462 0.93949 1.49854 0.90403 1.25740 0.97371 1.00561 0.94055 1.69739 1.03229 1.31466 1.51817 0.85561 0.78248 0.80814 0.77314 1.19189 1.20913 1.20891 0.93284 0.91704 0.92119 0.92577 0.93240 0.89115 0.93218 0.90506 0.92220 0.90312 0.92522 0.94600 0.90143 0.93640 0.93842 0.93974 0.77407 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.50 71.98 0.61 -3.74 16 2 C -0.09 -3.46 4.10 30.60 0.13 -3.33 16 3 C 0.09 3.80 2.19 45.06 0.10 3.90 16 4 H 0.04 1.61 5.86 -2.39 -0.01 1.60 16 5 N -0.50 -18.71 4.72 -832.32 -3.93 -22.64 16 6 C 0.05 1.55 2.47 44.92 0.11 1.67 16 7 C -0.13 -3.10 9.26 71.98 0.67 -2.43 16 8 C -0.18 -5.20 8.17 71.98 0.59 -4.61 16 9 C 0.04 1.38 5.59 86.59 0.48 1.86 16 10 C -0.11 -5.43 5.50 31.80 0.17 -5.26 16 11 C 0.23 11.55 0.99 -10.66 -0.01 11.54 16 12 O -0.60 -32.75 12.93 -148.98 -1.93 -34.68 16 13 C -0.55 -29.50 7.23 25.60 0.19 -29.32 16 14 H 0.08 4.10 4.70 -2.91 -0.01 4.09 16 15 C 0.02 1.15 5.26 84.65 0.45 1.60 16 16 N -0.92 -50.66 10.88 21.45 0.23 -50.43 16 17 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H 0.05 1.41 7.97 -2.39 -0.02 1.39 16 22 H 0.06 1.86 6.54 -2.39 -0.02 1.84 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.39 7.24 -2.39 -0.02 2.38 16 25 H 0.05 2.12 6.99 -2.39 -0.02 2.10 16 26 H 0.09 2.55 5.24 -2.39 -0.01 2.53 16 27 H 0.05 1.20 7.33 -2.39 -0.02 1.18 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.63 6.41 -2.38 -0.02 1.62 16 32 H 0.03 1.22 6.30 -2.39 -0.02 1.21 16 33 H 0.08 2.81 7.80 -2.39 -0.02 2.80 16 34 H 0.05 1.74 5.47 -2.39 -0.01 1.73 16 35 H 0.04 2.22 7.86 -2.39 -0.02 2.20 16 36 H 0.04 2.13 8.05 -2.38 -0.02 2.11 16 37 H 0.38 20.97 7.05 -74.06 -0.52 20.45 16 38 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -57.50 280.33 0.41 -57.09 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.52 Total: 33.61 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 3.48 Total: -28.13 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -3.69 Total: -73.07 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.93 Total: -34.68 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -57.50 0.41 -57.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.161 kcal (2) G-P(sol) polarization free energy of solvation -57.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds