Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47029 * 2 1 4 4 C 1.52991 * 109.47416 * 239.99467 * 2 1 3 5 5 O 1.42899 * 109.46797 * 119.99318 * 2 1 3 6 6 C 1.42895 * 113.99799 * 84.82493 * 5 2 1 7 7 C 1.50702 * 109.52244 * 64.68440 * 6 5 2 8 8 H 1.07997 * 120.00253 * 245.43585 * 7 6 5 9 9 C 1.37882 * 119.99837 * 65.43690 * 7 6 5 10 10 N 1.31515 * 120.00073 * 3.02600 * 9 7 6 11 11 Si 1.86801 * 119.99683 * 183.02405 * 9 7 6 12 12 H 1.48494 * 109.47310 * 270.00084 * 11 9 7 13 13 H 1.48505 * 109.47227 * 30.00100 * 11 9 7 14 14 H 1.48502 * 109.46826 * 149.99823 * 11 9 7 15 15 C 1.53125 * 109.52231 * 184.81043 * 6 5 2 16 16 C 1.53040 * 109.27775 * 62.37937 * 15 6 5 17 17 N 1.46844 * 109.57380 * 59.08028 * 16 15 6 18 18 C 1.46850 * 111.20234 * 298.29193 * 17 16 15 19 19 C 1.53042 * 109.51920 * 61.74242 * 18 17 16 20 20 H 1.08998 * 109.46920 * 277.51469 * 1 2 3 21 21 H 1.09003 * 109.46480 * 37.51554 * 1 2 3 22 22 H 1.09001 * 109.46874 * 157.51521 * 1 2 3 23 23 H 1.09002 * 109.47320 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.46799 * 299.99490 * 3 2 1 25 25 H 1.09000 * 109.47325 * 59.99368 * 3 2 1 26 26 H 1.08999 * 109.47237 * 309.16658 * 4 2 1 27 27 H 1.09004 * 109.47190 * 69.15947 * 4 2 1 28 28 H 1.08997 * 109.47404 * 189.16020 * 4 2 1 29 29 H 0.97001 * 119.99530 * 175.00334 * 10 9 7 30 30 H 1.09001 * 109.50023 * 182.25670 * 15 6 5 31 31 H 1.09001 * 109.50341 * 302.37386 * 15 6 5 32 32 H 1.09006 * 109.40745 * 299.07215 * 16 15 6 33 33 H 1.08995 * 109.45806 * 179.12805 * 16 15 6 34 34 H 1.00897 * 111.00134 * 62.39368 * 17 16 15 35 35 H 1.08993 * 109.46309 * 301.72661 * 18 17 16 36 36 H 1.09000 * 109.45320 * 181.75101 * 18 17 16 37 37 H 1.09003 * 109.49731 * 180.87779 * 19 18 17 38 38 H 1.09001 * 109.53564 * 60.78164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 2.0890 -2.0930 1.0255 7 6 3.1178 -2.4359 -0.0210 8 1 2.8140 -2.9124 -0.9412 9 6 4.4471 -2.1411 0.1966 10 7 4.8253 -1.6153 1.3412 11 14 5.7107 -2.4885 -1.1346 12 1 6.2444 -3.8637 -0.9636 13 1 5.0699 -2.3686 -2.4689 14 1 6.8223 -1.5095 -1.0295 15 6 2.4926 -2.7179 2.3639 16 6 1.4132 -2.4192 3.4069 17 7 0.1281 -2.9684 2.9561 18 6 -0.3023 -2.3475 1.6968 19 6 0.7251 -2.6455 0.6024 20 1 -0.3633 0.1344 1.0188 21 1 -0.3632 0.8152 -0.6259 22 1 -0.3633 -0.9496 -0.3930 23 1 3.1301 1.4426 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 1.5493 -1.6908 -1.3347 27 1 1.8166 -0.1218 -2.1316 28 1 3.1177 -0.8652 -1.1710 29 1 5.7678 -1.4750 1.5225 30 1 2.5946 -3.7967 2.2458 31 1 3.4428 -2.2956 2.6909 32 1 1.3222 -1.3406 3.5353 33 1 1.6901 -2.8759 4.3570 34 1 0.1752 -3.9723 2.8667 35 1 -0.3853 -1.2693 1.8332 36 1 -1.2714 -2.7523 1.4051 37 1 0.4132 -2.1715 -0.3283 38 1 0.7987 -3.7230 0.4552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -19.751920 kcal Electronic energy + Delta-G solvation = -18202.401547 eV Core-core repulsion = 15659.975832 eV Total energy + Delta-G solvation = -2542.425714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38323 -36.00679 -33.25247 -31.74999 -30.22920 -29.18231 -27.20351 -26.27429 -24.46959 -21.88627 -21.67124 -19.72449 -18.13112 -16.86744 -15.51023 -14.80963 -14.58131 -13.87578 -13.72906 -13.48303 -13.26584 -12.56238 -12.25671 -12.08326 -11.82875 -11.52413 -11.40644 -11.09147 -11.03800 -10.89698 -10.70551 -10.52627 -10.34986 -10.20982 -9.91113 -9.85917 -9.49009 -9.11040 -8.60503 -8.43098 -7.97714 -7.45400 -5.93022 -4.00673 3.23191 3.32379 3.34102 4.35188 5.00623 5.13335 5.39028 5.74208 5.78187 5.89024 5.99555 6.07831 6.16068 6.23872 6.29332 6.41011 6.44003 6.53297 6.59075 6.61902 6.69799 6.75258 6.82747 6.88120 6.97725 7.06576 7.19527 7.30705 7.53607 7.70251 7.77252 7.85532 8.06052 8.15217 8.32889 8.77743 9.10518 9.53561 11.00490 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.014344 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.212128 B = 1951.515440 C = 2514.203316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.167 4.167 5 O -0.361 6.361 6 C 0.246 3.754 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.074 3.926 10 N -0.861 5.861 11 Si 0.877 3.123 12 H -0.281 1.281 13 H -0.272 1.272 14 H -0.285 1.285 15 C -0.135 4.135 16 C 0.055 3.945 17 N -0.692 5.692 18 C 0.051 3.949 19 C -0.193 4.193 20 H 0.059 0.941 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.010 0.990 28 H 0.100 0.900 29 H 0.259 0.741 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.326 0.674 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 0.807 -1.085 5.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.081 3.919 3 C -0.191 4.191 4 C -0.223 4.223 5 O -0.281 6.281 6 C 0.208 3.792 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.129 4.129 10 N -0.498 5.498 11 Si 0.704 3.296 12 H -0.207 1.207 13 H -0.197 1.197 14 H -0.211 1.211 15 C -0.174 4.174 16 C -0.074 4.074 17 N -0.319 5.319 18 C -0.079 4.079 19 C -0.231 4.231 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.015 1.472 -0.424 6.207 hybrid contribution 1.310 -0.841 -1.717 2.318 sum -4.706 0.631 -2.141 5.208 Atomic orbital electron populations 1.23040 0.98398 1.01183 1.01208 1.20897 0.90535 0.92048 0.88375 1.21756 1.01849 0.95495 0.99950 1.23151 1.06149 0.98763 0.94233 1.87938 1.85644 1.20841 1.33650 1.18864 0.88671 0.78350 0.93294 1.21502 0.92345 1.39702 1.03383 0.92547 1.24876 0.98075 0.94503 0.95482 1.69828 1.15583 1.42205 1.22186 0.86850 0.81783 0.78084 0.82878 1.20690 1.19712 1.21115 1.22196 1.01782 0.98470 0.94966 1.22082 0.88040 1.00140 0.97177 1.60841 1.31247 1.09049 1.30789 1.22258 0.96207 1.00781 0.88614 1.23377 0.99426 1.00699 0.99626 0.92243 0.93868 0.91800 0.92244 0.93277 0.93354 0.91744 0.97144 0.88141 0.93053 0.93968 0.86705 0.91214 0.92987 0.85825 0.90035 0.93184 0.90616 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 7.18 37.16 0.27 -2.93 16 2 C 0.12 2.52 1.11 -90.62 -0.10 2.42 16 3 C -0.13 -2.54 8.72 37.16 0.32 -2.21 16 4 C -0.17 -3.55 6.58 37.15 0.24 -3.31 16 5 O -0.36 -8.58 8.44 -35.23 -0.30 -8.88 16 6 C 0.25 5.71 0.29 -91.65 -0.03 5.68 16 7 C -0.53 -13.39 4.31 -34.44 -0.15 -13.53 16 8 H 0.06 1.43 6.57 -52.49 -0.34 1.09 16 9 C 0.07 1.93 4.55 -17.82 -0.08 1.85 16 10 N -0.86 -23.25 10.71 55.43 0.59 -22.66 16 11 Si 0.88 20.34 29.07 -169.99 -4.94 15.40 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.14 -3.12 4.75 -26.65 -0.13 -3.25 16 16 C 0.05 1.10 6.42 -3.83 -0.02 1.08 16 17 N -0.69 -12.75 6.87 -113.81 -0.78 -13.53 16 18 C 0.05 0.93 5.63 -3.83 -0.02 0.91 16 19 C -0.19 -3.90 3.96 -26.65 -0.11 -4.00 16 20 H 0.06 1.05 6.11 -51.93 -0.32 0.74 16 21 H 0.04 0.67 7.93 -51.93 -0.41 0.26 16 22 H 0.06 1.11 4.76 -51.93 -0.25 0.86 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.38 3.88 -51.93 -0.20 1.18 16 27 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 28 H 0.10 2.43 4.70 -51.93 -0.24 2.19 16 29 H 0.26 6.78 8.32 -40.82 -0.34 6.45 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.12 3.00 5.67 -51.93 -0.29 2.70 16 32 H 0.07 1.51 7.76 -51.93 -0.40 1.11 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.33 5.62 8.86 -39.29 -0.35 5.27 16 35 H 0.08 1.57 4.69 -51.93 -0.24 1.33 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.50 2.91 -51.93 -0.15 1.35 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 267.14 15.07 4.03 4.03 Total: -1.00 -26.28 267.14 -6.92 -33.21 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.72 Total: 9.74 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 0.20 Total: -17.30 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.19 Total: -36.19 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.30 Total: -8.88 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.94 Total: 15.40 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.28 -6.92 -33.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.455 kcal (2) G-P(sol) polarization free energy of solvation -26.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds