Wall clock time and date at job start Mon Mar 30 2020 03:21:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53002 * 109.47029 * 2 1
4 4 C 1.52991 * 109.47416 * 239.99467 * 2 1 3
5 5 O 1.42899 * 109.46797 * 119.99318 * 2 1 3
6 6 C 1.42895 * 113.99799 * 84.82493 * 5 2 1
7 7 C 1.50702 * 109.52244 * 64.68440 * 6 5 2
8 8 H 1.07997 * 120.00253 * 245.43585 * 7 6 5
9 9 C 1.37882 * 119.99837 * 65.43690 * 7 6 5
10 10 N 1.31515 * 120.00073 * 3.02600 * 9 7 6
11 11 Si 1.86801 * 119.99683 * 183.02405 * 9 7 6
12 12 H 1.48494 * 109.47310 * 270.00084 * 11 9 7
13 13 H 1.48505 * 109.47227 * 30.00100 * 11 9 7
14 14 H 1.48502 * 109.46826 * 149.99823 * 11 9 7
15 15 C 1.53125 * 109.52231 * 184.81043 * 6 5 2
16 16 C 1.53040 * 109.27775 * 62.37937 * 15 6 5
17 17 N 1.46844 * 109.57380 * 59.08028 * 16 15 6
18 18 C 1.46850 * 111.20234 * 298.29193 * 17 16 15
19 19 C 1.53042 * 109.51920 * 61.74242 * 18 17 16
20 20 H 1.08998 * 109.46920 * 277.51469 * 1 2 3
21 21 H 1.09003 * 109.46480 * 37.51554 * 1 2 3
22 22 H 1.09001 * 109.46874 * 157.51521 * 1 2 3
23 23 H 1.09002 * 109.47320 * 179.97438 * 3 2 1
24 24 H 1.09005 * 109.46799 * 299.99490 * 3 2 1
25 25 H 1.09000 * 109.47325 * 59.99368 * 3 2 1
26 26 H 1.08999 * 109.47237 * 309.16658 * 4 2 1
27 27 H 1.09004 * 109.47190 * 69.15947 * 4 2 1
28 28 H 1.08997 * 109.47404 * 189.16020 * 4 2 1
29 29 H 0.97001 * 119.99530 * 175.00334 * 10 9 7
30 30 H 1.09001 * 109.50023 * 182.25670 * 15 6 5
31 31 H 1.09001 * 109.50341 * 302.37386 * 15 6 5
32 32 H 1.09006 * 109.40745 * 299.07215 * 16 15 6
33 33 H 1.08995 * 109.45806 * 179.12805 * 16 15 6
34 34 H 1.00897 * 111.00134 * 62.39368 * 17 16 15
35 35 H 1.08993 * 109.46309 * 301.72661 * 18 17 16
36 36 H 1.09000 * 109.45320 * 181.75101 * 18 17 16
37 37 H 1.09003 * 109.49731 * 180.87779 * 19 18 17
38 38 H 1.09001 * 109.53564 * 60.78164 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2491
5 8 2.0063 -0.6735 1.1669
6 6 2.0890 -2.0930 1.0255
7 6 3.1178 -2.4359 -0.0210
8 1 2.8140 -2.9124 -0.9412
9 6 4.4471 -2.1411 0.1966
10 7 4.8253 -1.6153 1.3412
11 14 5.7107 -2.4885 -1.1346
12 1 6.2444 -3.8637 -0.9636
13 1 5.0699 -2.3686 -2.4689
14 1 6.8223 -1.5095 -1.0295
15 6 2.4926 -2.7179 2.3639
16 6 1.4132 -2.4192 3.4069
17 7 0.1281 -2.9684 2.9561
18 6 -0.3023 -2.3475 1.6968
19 6 0.7251 -2.6455 0.6024
20 1 -0.3633 0.1344 1.0188
21 1 -0.3632 0.8152 -0.6259
22 1 -0.3633 -0.9496 -0.3930
23 1 3.1301 1.4426 0.0005
24 1 1.6767 1.9563 -0.8901
25 1 1.6766 1.9564 0.8899
26 1 1.5493 -1.6908 -1.3347
27 1 1.8166 -0.1218 -2.1316
28 1 3.1177 -0.8652 -1.1710
29 1 5.7678 -1.4750 1.5225
30 1 2.5946 -3.7967 2.2458
31 1 3.4428 -2.2956 2.6909
32 1 1.3222 -1.3406 3.5353
33 1 1.6901 -2.8759 4.3570
34 1 0.1752 -3.9723 2.8667
35 1 -0.3853 -1.2693 1.8332
36 1 -1.2714 -2.7523 1.4051
37 1 0.4132 -2.1715 -0.3283
38 1 0.7987 -3.7230 0.4552
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260198334.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:48
Heat of formation + Delta-G solvation = -37.053325 kcal
Electronic energy + Delta-G solvation = -18203.151792 eV
Core-core repulsion = 15659.975832 eV
Total energy + Delta-G solvation = -2543.175959 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.06508 -37.60676 -35.07254 -33.50877 -31.87023 -30.94396 -28.86651 -27.78946
-26.26508 -23.50197 -23.36851 -21.39478 -19.81289 -18.72945 -17.18348 -16.48172
-16.37589 -15.55543 -15.36723 -15.14046 -14.91587 -14.22152 -13.96102 -13.69815
-13.49312 -13.22627 -12.99492 -12.82995 -12.66093 -12.56314 -12.42006 -12.15677
-12.07491 -11.81892 -11.74143 -11.63467 -11.16621 -10.74639 -10.39022 -10.32634
-9.70460 -9.08832 -7.88142 -6.00569 1.35523 1.40939 1.46369 2.42550
3.15128 3.60017 3.64755 4.23789 4.26334 4.35209 4.41114 4.54578
4.56499 4.70123 4.76410 4.83501 4.89225 4.94713 4.98217 5.07801
5.14239 5.18951 5.21024 5.24210 5.35338 5.43520 5.51998 5.67068
5.75325 5.86537 5.98425 6.15112 6.28635 6.44264 6.65517 6.84293
7.32804 7.58725 9.01852
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.024812 B = 0.014344 C = 0.011134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1128.212128 B = 1951.515440 C = 2514.203316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.108 3.892
3 C -0.130 4.130
4 C -0.161 4.161
5 O -0.384 6.384
6 C 0.240 3.760
7 C -0.528 4.528
8 H 0.049 0.951
9 C 0.035 3.965
10 N -0.887 5.887
11 Si 0.923 3.077
12 H -0.280 1.280
13 H -0.268 1.268
14 H -0.291 1.291
15 C -0.133 4.133
16 C 0.068 3.932
17 N -0.683 5.683
18 C 0.056 3.944
19 C -0.185 4.185
20 H 0.059 0.941
21 H 0.067 0.933
22 H 0.067 0.933
23 H 0.031 0.969
24 H 0.078 0.922
25 H 0.053 0.947
26 H 0.060 0.940
27 H 0.033 0.967
28 H 0.066 0.934
29 H 0.254 0.746
30 H 0.033 0.967
31 H 0.082 0.918
32 H 0.054 0.946
33 H 0.067 0.933
34 H 0.336 0.664
35 H 0.076 0.924
36 H 0.078 0.922
37 H 0.082 0.918
38 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.708 0.907 -1.757 7.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.068 3.932
3 C -0.187 4.187
4 C -0.217 4.217
5 O -0.304 6.304
6 C 0.202 3.798
7 C -0.567 4.567
8 H 0.068 0.932
9 C -0.166 4.166
10 N -0.526 5.526
11 Si 0.750 3.250
12 H -0.206 1.206
13 H -0.192 1.192
14 H -0.217 1.217
15 C -0.173 4.173
16 C -0.062 4.062
17 N -0.311 5.311
18 C -0.074 4.074
19 C -0.224 4.224
20 H 0.077 0.923
21 H 0.086 0.914
22 H 0.086 0.914
23 H 0.051 0.949
24 H 0.097 0.903
25 H 0.072 0.928
26 H 0.078 0.922
27 H 0.052 0.948
28 H 0.085 0.915
29 H 0.064 0.936
30 H 0.051 0.949
31 H 0.101 0.899
32 H 0.072 0.928
33 H 0.086 0.914
34 H 0.153 0.847
35 H 0.094 0.906
36 H 0.096 0.904
37 H 0.100 0.900
38 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -7.898 1.560 -1.110 8.127
hybrid contribution 1.883 -0.856 -1.548 2.584
sum -6.015 0.703 -2.658 6.614
Atomic orbital electron populations
1.22880 0.95604 1.02446 1.01835 1.21216 0.92714 0.92269 0.86995
1.21751 1.00110 0.95104 1.01719 1.22977 1.03821 0.99215 0.95720
1.87893 1.86313 1.20978 1.35224 1.18874 0.89808 0.78538 0.92576
1.21737 0.92979 1.38554 1.03400 0.93246 1.25393 0.99623 0.94889
0.96690 1.69980 1.15321 1.43814 1.23515 0.86115 0.79973 0.77575
0.81347 1.20625 1.19226 1.21682 1.22092 1.01394 0.97539 0.96262
1.21875 0.87920 0.99386 0.96975 1.60826 1.29644 1.09762 1.30880
1.22263 0.96733 1.00705 0.87661 1.23270 0.98295 1.00144 1.00643
0.92252 0.91372 0.91412 0.94945 0.90281 0.92777 0.92181 0.94848
0.91475 0.93620 0.94850 0.89942 0.92784 0.91441 0.84693 0.90586
0.90367 0.89973 0.93665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.49 7.18 71.98 0.52 -4.98 16
2 C 0.11 4.28 1.11 -10.79 -0.01 4.27 16
3 C -0.13 -4.74 8.72 71.98 0.63 -4.11 16
4 C -0.16 -6.64 6.58 71.98 0.47 -6.16 16
5 O -0.38 -18.12 8.44 -148.98 -1.26 -19.38 16
6 C 0.24 11.06 0.29 -11.46 0.00 11.06 16
7 C -0.53 -26.77 4.31 25.60 0.11 -26.66 16
8 H 0.05 2.51 6.57 -2.91 -0.02 2.49 16
9 C 0.03 1.83 4.55 84.66 0.38 2.22 16
10 N -0.89 -49.33 10.71 21.45 0.23 -49.10 16
11 Si 0.92 42.39 29.07 68.60 1.99 44.39 16
12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
14 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16
15 C -0.13 -6.21 4.75 30.65 0.15 -6.06 16
16 C 0.07 2.68 6.42 86.33 0.55 3.24 16
17 N -0.68 -23.57 6.87 -514.00 -3.53 -27.10 16
18 C 0.06 1.89 5.63 86.33 0.49 2.38 16
19 C -0.18 -7.15 3.96 30.65 0.12 -7.03 16
20 H 0.06 1.93 6.11 -2.39 -0.01 1.91 16
21 H 0.07 1.84 7.93 -2.39 -0.02 1.83 16
22 H 0.07 2.12 4.76 -2.39 -0.01 2.10 16
23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16
24 H 0.08 2.37 8.12 -2.38 -0.02 2.35 16
25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
26 H 0.06 2.49 3.88 -2.39 -0.01 2.48 16
27 H 0.03 1.19 8.12 -2.38 -0.02 1.17 16
28 H 0.07 3.23 4.70 -2.39 -0.01 3.22 16
29 H 0.25 13.77 8.32 -92.71 -0.77 13.00 16
30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16
31 H 0.08 4.42 5.67 -2.39 -0.01 4.41 16
32 H 0.05 2.31 7.76 -2.38 -0.02 2.29 16
33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
34 H 0.34 10.70 8.86 -89.70 -0.79 9.91 16
35 H 0.08 2.72 4.69 -2.39 -0.01 2.71 16
36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
37 H 0.08 3.07 2.91 -2.39 -0.01 3.06 16
38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
Total: -1.00 -56.17 267.14 1.11 -55.06
By element:
Atomic # 1 Polarization: 27.70 SS G_CDS: 0.26 Total: 27.97 kcal
Atomic # 6 Polarization: -35.25 SS G_CDS: 3.41 Total: -31.84 kcal
Atomic # 7 Polarization: -72.90 SS G_CDS: -3.30 Total: -76.20 kcal
Atomic # 8 Polarization: -18.12 SS G_CDS: -1.26 Total: -19.38 kcal
Atomic # 14 Polarization: 42.39 SS G_CDS: 1.99 Total: 44.39 kcal
Total: -56.17 1.11 -55.06 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260198334.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.011 kcal
(2) G-P(sol) polarization free energy of solvation -56.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.161 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds