Wall clock time and date at job start Mon Mar 30 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47029 * 2 1 4 4 C 1.52991 * 109.47416 * 239.99467 * 2 1 3 5 5 O 1.42899 * 109.46797 * 119.99318 * 2 1 3 6 6 C 1.42895 * 113.99799 * 84.82493 * 5 2 1 7 7 C 1.50702 * 109.52244 * 64.68440 * 6 5 2 8 8 H 1.07997 * 120.00253 * 245.43585 * 7 6 5 9 9 C 1.37882 * 119.99837 * 65.43690 * 7 6 5 10 10 N 1.31515 * 120.00073 * 3.02600 * 9 7 6 11 11 Si 1.86801 * 119.99683 * 183.02405 * 9 7 6 12 12 H 1.48494 * 109.47310 * 270.00084 * 11 9 7 13 13 H 1.48505 * 109.47227 * 30.00100 * 11 9 7 14 14 H 1.48502 * 109.46826 * 149.99823 * 11 9 7 15 15 C 1.53125 * 109.52231 * 184.81043 * 6 5 2 16 16 C 1.53040 * 109.27775 * 62.37937 * 15 6 5 17 17 N 1.46844 * 109.57380 * 59.08028 * 16 15 6 18 18 C 1.46850 * 111.20234 * 298.29193 * 17 16 15 19 19 C 1.53042 * 109.51920 * 61.74242 * 18 17 16 20 20 H 1.08998 * 109.46920 * 277.51469 * 1 2 3 21 21 H 1.09003 * 109.46480 * 37.51554 * 1 2 3 22 22 H 1.09001 * 109.46874 * 157.51521 * 1 2 3 23 23 H 1.09002 * 109.47320 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.46799 * 299.99490 * 3 2 1 25 25 H 1.09000 * 109.47325 * 59.99368 * 3 2 1 26 26 H 1.08999 * 109.47237 * 309.16658 * 4 2 1 27 27 H 1.09004 * 109.47190 * 69.15947 * 4 2 1 28 28 H 1.08997 * 109.47404 * 189.16020 * 4 2 1 29 29 H 0.97001 * 119.99530 * 175.00334 * 10 9 7 30 30 H 1.09001 * 109.50023 * 182.25670 * 15 6 5 31 31 H 1.09001 * 109.50341 * 302.37386 * 15 6 5 32 32 H 1.09006 * 109.40745 * 299.07215 * 16 15 6 33 33 H 1.08995 * 109.45806 * 179.12805 * 16 15 6 34 34 H 1.00897 * 111.00134 * 62.39368 * 17 16 15 35 35 H 1.08993 * 109.46309 * 301.72661 * 18 17 16 36 36 H 1.09000 * 109.45320 * 181.75101 * 18 17 16 37 37 H 1.09003 * 109.49731 * 180.87779 * 19 18 17 38 38 H 1.09001 * 109.53564 * 60.78164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 2.0890 -2.0930 1.0255 7 6 3.1178 -2.4359 -0.0210 8 1 2.8140 -2.9124 -0.9412 9 6 4.4471 -2.1411 0.1966 10 7 4.8253 -1.6153 1.3412 11 14 5.7107 -2.4885 -1.1346 12 1 6.2444 -3.8637 -0.9636 13 1 5.0699 -2.3686 -2.4689 14 1 6.8223 -1.5095 -1.0295 15 6 2.4926 -2.7179 2.3639 16 6 1.4132 -2.4192 3.4069 17 7 0.1281 -2.9684 2.9561 18 6 -0.3023 -2.3475 1.6968 19 6 0.7251 -2.6455 0.6024 20 1 -0.3633 0.1344 1.0188 21 1 -0.3632 0.8152 -0.6259 22 1 -0.3633 -0.9496 -0.3930 23 1 3.1301 1.4426 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 1.5493 -1.6908 -1.3347 27 1 1.8166 -0.1218 -2.1316 28 1 3.1177 -0.8652 -1.1710 29 1 5.7678 -1.4750 1.5225 30 1 2.5946 -3.7967 2.2458 31 1 3.4428 -2.2956 2.6909 32 1 1.3222 -1.3406 3.5353 33 1 1.6901 -2.8759 4.3570 34 1 0.1752 -3.9723 2.8667 35 1 -0.3853 -1.2693 1.8332 36 1 -1.2714 -2.7523 1.4051 37 1 0.4132 -2.1715 -0.3283 38 1 0.7987 -3.7230 0.4552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:48 Heat of formation + Delta-G solvation = -37.053325 kcal Electronic energy + Delta-G solvation = -18203.151792 eV Core-core repulsion = 15659.975832 eV Total energy + Delta-G solvation = -2543.175959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06508 -37.60676 -35.07254 -33.50877 -31.87023 -30.94396 -28.86651 -27.78946 -26.26508 -23.50197 -23.36851 -21.39478 -19.81289 -18.72945 -17.18348 -16.48172 -16.37589 -15.55543 -15.36723 -15.14046 -14.91587 -14.22152 -13.96102 -13.69815 -13.49312 -13.22627 -12.99492 -12.82995 -12.66093 -12.56314 -12.42006 -12.15677 -12.07491 -11.81892 -11.74143 -11.63467 -11.16621 -10.74639 -10.39022 -10.32634 -9.70460 -9.08832 -7.88142 -6.00569 1.35523 1.40939 1.46369 2.42550 3.15128 3.60017 3.64755 4.23789 4.26334 4.35209 4.41114 4.54578 4.56499 4.70123 4.76410 4.83501 4.89225 4.94713 4.98217 5.07801 5.14239 5.18951 5.21024 5.24210 5.35338 5.43520 5.51998 5.67068 5.75325 5.86537 5.98425 6.15112 6.28635 6.44264 6.65517 6.84293 7.32804 7.58725 9.01852 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.014344 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.212128 B = 1951.515440 C = 2514.203316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 C -0.130 4.130 4 C -0.161 4.161 5 O -0.384 6.384 6 C 0.240 3.760 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.035 3.965 10 N -0.887 5.887 11 Si 0.923 3.077 12 H -0.280 1.280 13 H -0.268 1.268 14 H -0.291 1.291 15 C -0.133 4.133 16 C 0.068 3.932 17 N -0.683 5.683 18 C 0.056 3.944 19 C -0.185 4.185 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.031 0.969 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.254 0.746 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.336 0.664 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 0.907 -1.757 7.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 C -0.187 4.187 4 C -0.217 4.217 5 O -0.304 6.304 6 C 0.202 3.798 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.166 4.166 10 N -0.526 5.526 11 Si 0.750 3.250 12 H -0.206 1.206 13 H -0.192 1.192 14 H -0.217 1.217 15 C -0.173 4.173 16 C -0.062 4.062 17 N -0.311 5.311 18 C -0.074 4.074 19 C -0.224 4.224 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.898 1.560 -1.110 8.127 hybrid contribution 1.883 -0.856 -1.548 2.584 sum -6.015 0.703 -2.658 6.614 Atomic orbital electron populations 1.22880 0.95604 1.02446 1.01835 1.21216 0.92714 0.92269 0.86995 1.21751 1.00110 0.95104 1.01719 1.22977 1.03821 0.99215 0.95720 1.87893 1.86313 1.20978 1.35224 1.18874 0.89808 0.78538 0.92576 1.21737 0.92979 1.38554 1.03400 0.93246 1.25393 0.99623 0.94889 0.96690 1.69980 1.15321 1.43814 1.23515 0.86115 0.79973 0.77575 0.81347 1.20625 1.19226 1.21682 1.22092 1.01394 0.97539 0.96262 1.21875 0.87920 0.99386 0.96975 1.60826 1.29644 1.09762 1.30880 1.22263 0.96733 1.00705 0.87661 1.23270 0.98295 1.00144 1.00643 0.92252 0.91372 0.91412 0.94945 0.90281 0.92777 0.92181 0.94848 0.91475 0.93620 0.94850 0.89942 0.92784 0.91441 0.84693 0.90586 0.90367 0.89973 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.49 7.18 71.98 0.52 -4.98 16 2 C 0.11 4.28 1.11 -10.79 -0.01 4.27 16 3 C -0.13 -4.74 8.72 71.98 0.63 -4.11 16 4 C -0.16 -6.64 6.58 71.98 0.47 -6.16 16 5 O -0.38 -18.12 8.44 -148.98 -1.26 -19.38 16 6 C 0.24 11.06 0.29 -11.46 0.00 11.06 16 7 C -0.53 -26.77 4.31 25.60 0.11 -26.66 16 8 H 0.05 2.51 6.57 -2.91 -0.02 2.49 16 9 C 0.03 1.83 4.55 84.66 0.38 2.22 16 10 N -0.89 -49.33 10.71 21.45 0.23 -49.10 16 11 Si 0.92 42.39 29.07 68.60 1.99 44.39 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 15 C -0.13 -6.21 4.75 30.65 0.15 -6.06 16 16 C 0.07 2.68 6.42 86.33 0.55 3.24 16 17 N -0.68 -23.57 6.87 -514.00 -3.53 -27.10 16 18 C 0.06 1.89 5.63 86.33 0.49 2.38 16 19 C -0.18 -7.15 3.96 30.65 0.12 -7.03 16 20 H 0.06 1.93 6.11 -2.39 -0.01 1.91 16 21 H 0.07 1.84 7.93 -2.39 -0.02 1.83 16 22 H 0.07 2.12 4.76 -2.39 -0.01 2.10 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 2.37 8.12 -2.38 -0.02 2.35 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 2.49 3.88 -2.39 -0.01 2.48 16 27 H 0.03 1.19 8.12 -2.38 -0.02 1.17 16 28 H 0.07 3.23 4.70 -2.39 -0.01 3.22 16 29 H 0.25 13.77 8.32 -92.71 -0.77 13.00 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 4.42 5.67 -2.39 -0.01 4.41 16 32 H 0.05 2.31 7.76 -2.38 -0.02 2.29 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.34 10.70 8.86 -89.70 -0.79 9.91 16 35 H 0.08 2.72 4.69 -2.39 -0.01 2.71 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 3.07 2.91 -2.39 -0.01 3.06 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -56.17 267.14 1.11 -55.06 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.26 Total: 27.97 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.41 Total: -31.84 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -3.30 Total: -76.20 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.26 Total: -19.38 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.99 Total: 44.39 kcal Total: -56.17 1.11 -55.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.011 kcal (2) G-P(sol) polarization free energy of solvation -56.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds