Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47093 * 2 1 4 4 C 1.46904 * 111.00100 * 179.12486 * 3 2 1 5 5 C 1.50699 * 109.61409 * 303.25924 * 4 3 2 6 6 H 1.07998 * 120.00281 * 124.99425 * 5 4 3 7 7 C 1.37875 * 119.99950 * 304.99459 * 5 4 3 8 8 N 1.31512 * 119.99999 * 353.84148 * 7 5 4 9 9 Si 1.86799 * 120.00255 * 173.83973 * 7 5 4 10 10 H 1.48499 * 109.47161 * 59.99662 * 9 7 5 11 11 H 1.48495 * 109.47495 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46968 * 300.00266 * 9 7 5 13 13 C 1.53171 * 109.54505 * 183.03352 * 4 3 2 14 14 C 1.53095 * 109.16245 * 183.15318 * 13 4 3 15 15 O 1.42901 * 109.42519 * 57.60460 * 14 13 4 16 16 C 1.42905 * 114.09770 * 298.86053 * 15 14 13 17 17 H 1.08997 * 109.47763 * 301.14960 * 16 15 14 18 18 C 1.52997 * 109.47859 * 181.13050 * 16 15 14 19 19 C 1.52994 * 109.47503 * 65.02159 * 18 16 15 20 20 C 1.53090 * 109.42369 * 61.14004 * 16 15 14 21 21 H 1.09005 * 109.47388 * 60.00061 * 1 2 3 22 22 H 1.09001 * 109.47302 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47337 * 300.00368 * 1 2 3 24 24 H 1.09004 * 109.46867 * 239.99382 * 2 1 3 25 25 H 1.08995 * 109.46865 * 120.00027 * 2 1 3 26 26 H 1.00893 * 111.00847 * 55.16817 * 3 2 1 27 27 H 0.96998 * 120.00524 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.52637 * 303.05725 * 13 4 3 29 29 H 1.08996 * 109.52257 * 63.24855 * 13 4 3 30 30 H 1.09004 * 109.47996 * 177.59757 * 14 13 4 31 31 H 1.08999 * 109.47791 * 297.61255 * 14 13 4 32 32 H 1.09005 * 109.47111 * 305.02015 * 18 16 15 33 33 H 1.09003 * 109.46803 * 185.02462 * 18 16 15 34 34 H 1.08997 * 109.47270 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.47054 * 59.99822 * 19 18 16 36 36 H 1.09003 * 109.47339 * 299.99975 * 19 18 16 37 37 H 1.08999 * 109.52045 * 62.30142 * 20 16 15 38 38 H 1.09002 * 109.52337 * 182.42766 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4880 1.4242 0.0209 5 6 3.9973 0.6655 1.2193 6 1 4.7075 -0.1375 1.0882 7 6 3.5566 0.9966 2.4831 8 7 2.7876 2.0492 2.6566 9 14 4.0517 -0.0501 3.9489 10 1 5.5313 -0.0567 4.0752 11 1 3.4514 0.5132 5.1848 12 1 3.5656 -1.4394 3.7519 13 6 3.9607 2.8792 0.0967 14 6 5.4901 2.9144 0.0386 15 8 5.9349 2.2787 -1.1614 16 6 5.5624 0.9029 -1.2654 17 1 5.9722 0.3505 -0.4198 18 6 6.1135 0.3224 -2.5693 19 6 7.6427 0.3247 -2.5226 20 6 4.0360 0.7869 -1.2598 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6330 1.9053 0.7731 27 1 2.4772 2.2820 3.5456 28 1 3.5513 3.4395 -0.7439 29 1 3.6214 3.3241 1.0321 30 1 5.8305 3.9499 0.0492 31 1 5.8988 2.3886 0.9016 32 1 5.7747 0.9293 -3.4090 33 1 5.7552 -0.6997 -2.6919 34 1 8.0352 -0.0893 -3.4513 35 1 7.9814 -0.2822 -1.6829 36 1 8.0010 1.3468 -2.4000 37 1 3.6281 1.3050 -2.1277 38 1 3.7504 -0.2644 -1.2956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = -65.945168 kcal Electronic energy + Delta-G solvation = -17406.336678 eV Core-core repulsion = 14861.907874 eV Total energy + Delta-G solvation = -2544.428804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.82907 -35.72960 -33.33247 -32.33231 -31.12027 -28.88347 -27.58982 -25.36314 -23.34489 -22.77319 -20.58751 -20.26333 -18.77426 -16.01543 -15.50610 -15.14907 -14.89822 -14.03875 -13.75131 -13.40470 -13.20441 -13.09615 -12.94602 -12.30498 -12.17500 -11.74012 -11.26553 -11.22329 -10.90335 -10.79970 -10.65336 -10.60910 -10.52373 -10.33124 -10.08465 -10.00540 -9.63082 -9.08845 -8.97770 -8.47894 -8.38386 -6.95318 -6.04030 -4.21872 3.21121 3.27170 3.30289 4.30928 4.68746 5.09431 5.38930 5.56658 5.68084 5.74114 6.02522 6.14299 6.15181 6.23272 6.23949 6.29596 6.36440 6.42484 6.52828 6.55628 6.61031 6.63726 6.71975 6.81335 6.93808 7.02814 7.12734 7.22268 7.24481 7.50909 7.64809 7.81814 8.18776 8.29901 8.67282 8.87005 9.14595 9.48179 10.88095 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.011519 C = 0.009558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.099542 B = 2430.223717 C = 2928.818744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 N -0.686 5.686 4 C 0.234 3.766 5 C -0.532 4.532 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C -0.133 4.133 14 C 0.077 3.923 15 O -0.395 6.395 16 C 0.100 3.900 17 H 0.058 0.942 18 C -0.116 4.116 19 C -0.146 4.146 20 C -0.125 4.125 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.354 0.646 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -2.002 -5.074 5.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 N -0.319 5.319 4 C 0.144 3.856 5 C -0.571 4.571 6 H 0.071 0.929 7 C -0.131 4.131 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.171 4.171 14 C 0.000 4.000 15 O -0.315 6.315 16 C 0.042 3.958 17 H 0.076 0.924 18 C -0.154 4.154 19 C -0.204 4.204 20 C -0.163 4.163 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.176 0.824 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.271 -1.730 -5.745 6.415 hybrid contribution 0.202 -1.014 2.145 2.381 sum 2.473 -2.744 -3.600 5.158 Atomic orbital electron populations 1.21779 0.97767 0.99698 1.01118 1.21580 0.92377 0.92934 0.99641 1.61041 1.09171 1.11114 1.50600 1.18397 0.85342 0.91592 0.90259 1.21706 1.26267 1.17381 0.91765 0.92929 1.24920 0.94991 0.94607 0.98546 1.69655 1.35546 1.24720 1.22962 0.86755 0.78887 0.80896 0.82140 1.20280 1.21262 1.20344 1.22064 0.94107 0.98987 1.01983 1.22424 0.95595 0.95328 0.86654 1.87688 1.77741 1.24035 1.42044 1.21981 0.94553 0.82978 0.96246 0.92377 1.21566 0.95776 1.00225 0.97819 1.21700 0.96072 1.02130 1.00452 1.22146 0.94531 1.00171 0.99459 0.93223 0.93957 0.93521 0.93512 0.94632 0.82430 0.92564 0.94843 0.88726 0.91514 0.92853 0.91865 0.91487 0.93644 0.93203 0.92125 0.93235 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.16 37.16 0.38 -2.28 16 2 C 0.06 1.39 5.75 -3.83 -0.02 1.37 16 3 N -0.69 -15.99 6.02 -100.95 -0.61 -16.59 16 4 C 0.23 5.49 0.42 -132.57 -0.06 5.44 16 5 C -0.53 -13.40 4.91 -34.44 -0.17 -13.57 16 6 H 0.05 1.36 6.75 -52.49 -0.35 1.01 16 7 C 0.07 1.82 5.02 -17.82 -0.09 1.73 16 8 N -0.89 -23.01 9.68 55.43 0.54 -22.47 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C -0.13 -3.09 5.01 -26.59 -0.13 -3.22 16 14 C 0.08 1.65 6.62 37.21 0.25 1.89 16 15 O -0.40 -8.31 9.94 -35.23 -0.35 -8.66 16 16 C 0.10 2.00 2.41 -26.69 -0.06 1.93 16 17 H 0.06 1.24 6.77 -51.93 -0.35 0.89 16 18 C -0.12 -1.89 5.64 -26.74 -0.15 -2.04 16 19 C -0.15 -2.11 9.81 37.15 0.36 -1.75 16 20 C -0.12 -2.66 3.93 -26.59 -0.10 -2.77 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.97 6.51 -51.93 -0.34 0.63 16 25 H 0.04 0.85 6.80 -51.93 -0.35 0.50 16 26 H 0.35 8.85 6.66 -39.30 -0.26 8.59 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 2.38 6.22 -51.93 -0.32 2.06 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.12 6.68 -51.93 -0.35 0.77 16 LS Contribution 287.52 15.07 4.33 4.33 Total: -1.00 -25.49 287.52 -7.39 -32.88 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.48 Total: 8.39 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 0.20 Total: -13.26 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.07 Total: -39.07 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.35 Total: -8.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -25.49 -7.39 -32.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.065 kcal (2) G-P(sol) polarization free energy of solvation -25.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds