Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47093 * 2 1 4 4 C 1.46904 * 111.00100 * 179.12486 * 3 2 1 5 5 C 1.50699 * 109.61409 * 303.25924 * 4 3 2 6 6 H 1.07998 * 120.00281 * 124.99425 * 5 4 3 7 7 C 1.37875 * 119.99950 * 304.99459 * 5 4 3 8 8 N 1.31512 * 119.99999 * 353.84148 * 7 5 4 9 9 Si 1.86799 * 120.00255 * 173.83973 * 7 5 4 10 10 H 1.48499 * 109.47161 * 59.99662 * 9 7 5 11 11 H 1.48495 * 109.47495 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46968 * 300.00266 * 9 7 5 13 13 C 1.53171 * 109.54505 * 183.03352 * 4 3 2 14 14 C 1.53095 * 109.16245 * 183.15318 * 13 4 3 15 15 O 1.42901 * 109.42519 * 57.60460 * 14 13 4 16 16 C 1.42905 * 114.09770 * 298.86053 * 15 14 13 17 17 H 1.08997 * 109.47763 * 301.14960 * 16 15 14 18 18 C 1.52997 * 109.47859 * 181.13050 * 16 15 14 19 19 C 1.52994 * 109.47503 * 65.02159 * 18 16 15 20 20 C 1.53090 * 109.42369 * 61.14004 * 16 15 14 21 21 H 1.09005 * 109.47388 * 60.00061 * 1 2 3 22 22 H 1.09001 * 109.47302 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47337 * 300.00368 * 1 2 3 24 24 H 1.09004 * 109.46867 * 239.99382 * 2 1 3 25 25 H 1.08995 * 109.46865 * 120.00027 * 2 1 3 26 26 H 1.00893 * 111.00847 * 55.16817 * 3 2 1 27 27 H 0.96998 * 120.00524 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.52637 * 303.05725 * 13 4 3 29 29 H 1.08996 * 109.52257 * 63.24855 * 13 4 3 30 30 H 1.09004 * 109.47996 * 177.59757 * 14 13 4 31 31 H 1.08999 * 109.47791 * 297.61255 * 14 13 4 32 32 H 1.09005 * 109.47111 * 305.02015 * 18 16 15 33 33 H 1.09003 * 109.46803 * 185.02462 * 18 16 15 34 34 H 1.08997 * 109.47270 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.47054 * 59.99822 * 19 18 16 36 36 H 1.09003 * 109.47339 * 299.99975 * 19 18 16 37 37 H 1.08999 * 109.52045 * 62.30142 * 20 16 15 38 38 H 1.09002 * 109.52337 * 182.42766 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4880 1.4242 0.0209 5 6 3.9973 0.6655 1.2193 6 1 4.7075 -0.1375 1.0882 7 6 3.5566 0.9966 2.4831 8 7 2.7876 2.0492 2.6566 9 14 4.0517 -0.0501 3.9489 10 1 5.5313 -0.0567 4.0752 11 1 3.4514 0.5132 5.1848 12 1 3.5656 -1.4394 3.7519 13 6 3.9607 2.8792 0.0967 14 6 5.4901 2.9144 0.0386 15 8 5.9349 2.2787 -1.1614 16 6 5.5624 0.9029 -1.2654 17 1 5.9722 0.3505 -0.4198 18 6 6.1135 0.3224 -2.5693 19 6 7.6427 0.3247 -2.5226 20 6 4.0360 0.7869 -1.2598 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6330 1.9053 0.7731 27 1 2.4772 2.2820 3.5456 28 1 3.5513 3.4395 -0.7439 29 1 3.6214 3.3241 1.0321 30 1 5.8305 3.9499 0.0492 31 1 5.8988 2.3886 0.9016 32 1 5.7747 0.9293 -3.4090 33 1 5.7552 -0.6997 -2.6919 34 1 8.0352 -0.0893 -3.4513 35 1 7.9814 -0.2822 -1.6829 36 1 8.0010 1.3468 -2.4000 37 1 3.6281 1.3050 -2.1277 38 1 3.7504 -0.2644 -1.2956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = -81.090541 kcal Electronic energy + Delta-G solvation = -17406.993430 eV Core-core repulsion = 14861.907874 eV Total energy + Delta-G solvation = -2545.085556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55549 -37.48036 -34.80126 -34.14177 -32.92270 -30.46200 -29.25478 -27.30382 -24.83789 -24.50547 -22.24224 -21.80021 -20.64020 -17.91119 -17.11761 -16.83108 -16.80110 -15.78979 -15.45680 -15.19033 -14.76429 -14.60872 -14.41837 -13.92094 -13.75395 -13.49589 -13.00943 -12.75453 -12.61362 -12.49499 -12.29298 -12.21529 -12.13658 -11.85792 -11.82925 -11.68300 -11.38339 -10.83888 -10.80845 -10.39371 -10.13213 -8.85144 -7.98387 -6.21853 1.35027 1.38881 1.43223 2.38800 3.07965 3.13140 3.86263 4.10203 4.24048 4.39867 4.44929 4.53368 4.62815 4.64256 4.69228 4.76194 4.80349 4.83000 4.95140 5.06048 5.12617 5.16740 5.21026 5.28023 5.32618 5.37993 5.40989 5.51629 5.53066 5.64013 5.72221 5.90269 6.27156 6.57275 6.75625 6.97396 7.19898 7.49754 8.90003 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.011519 C = 0.009558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.099542 B = 2430.223717 C = 2928.818744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 N -0.687 5.687 4 C 0.224 3.776 5 C -0.534 4.534 6 H 0.040 0.960 7 C 0.037 3.963 8 N -0.902 5.902 9 Si 0.931 3.069 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.279 1.279 13 C -0.128 4.128 14 C 0.082 3.918 15 O -0.395 6.395 16 C 0.099 3.901 17 H 0.040 0.960 18 C -0.112 4.112 19 C -0.142 4.142 20 C -0.118 4.118 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.008 0.992 26 H 0.342 0.658 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -2.670 -6.041 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 N -0.319 5.319 4 C 0.134 3.866 5 C -0.574 4.574 6 H 0.059 0.941 7 C -0.163 4.163 8 N -0.542 5.542 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.205 1.205 13 C -0.166 4.166 14 C 0.005 3.995 15 O -0.315 6.315 16 C 0.041 3.959 17 H 0.058 0.942 18 C -0.149 4.149 19 C -0.200 4.200 20 C -0.156 4.156 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.162 0.838 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.590 -2.406 -6.724 7.596 hybrid contribution 0.092 -0.815 2.432 2.567 sum 2.683 -3.221 -4.292 5.999 Atomic orbital electron populations 1.21695 0.95141 1.01405 1.01178 1.21611 0.94628 0.91636 0.98527 1.61115 1.09070 1.12020 1.49703 1.18522 0.85592 0.91681 0.90778 1.21785 1.25904 1.17066 0.92646 0.94130 1.25393 0.95273 0.95395 1.00245 1.69749 1.36044 1.25355 1.23057 0.86028 0.78400 0.79608 0.80080 1.20321 1.21147 1.20517 1.21979 0.95344 0.98729 1.00594 1.22348 0.94306 0.96497 0.86344 1.87701 1.77587 1.24646 1.41524 1.22081 0.93611 0.82382 0.97803 0.94162 1.21566 0.96995 1.00800 0.95549 1.21668 0.94633 1.01748 1.01917 1.22065 0.95582 0.99839 0.98110 0.92200 0.91457 0.94352 0.92869 0.97422 0.83754 0.92781 0.95055 0.90914 0.89195 0.94658 0.91353 0.89918 0.90903 0.93297 0.93132 0.93373 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 10.16 71.98 0.73 -4.02 16 2 C 0.07 2.80 5.75 86.30 0.50 3.29 16 3 N -0.69 -31.97 6.02 -473.31 -2.85 -34.82 16 4 C 0.22 10.54 0.42 2.90 0.00 10.54 16 5 C -0.53 -27.12 4.91 25.60 0.13 -27.00 16 6 H 0.04 2.12 6.75 -2.91 -0.02 2.10 16 7 C 0.04 1.91 5.02 84.65 0.42 2.34 16 8 N -0.90 -47.12 9.68 21.45 0.21 -46.91 16 9 Si 0.93 42.01 29.54 68.60 2.03 44.04 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C -0.13 -5.95 5.01 30.68 0.15 -5.80 16 14 C 0.08 3.48 6.62 72.01 0.48 3.96 16 15 O -0.39 -16.19 9.94 -148.98 -1.48 -17.67 16 16 C 0.10 3.85 2.41 30.62 0.07 3.92 16 17 H 0.04 1.71 6.77 -2.39 -0.02 1.70 16 18 C -0.11 -3.37 5.64 30.59 0.17 -3.20 16 19 C -0.14 -3.76 9.81 71.98 0.71 -3.05 16 20 C -0.12 -4.93 3.93 30.69 0.12 -4.81 16 21 H 0.06 1.95 8.14 -2.38 -0.02 1.94 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 2.15 6.51 -2.39 -0.02 2.14 16 25 H 0.01 0.36 6.80 -2.39 -0.02 0.34 16 26 H 0.34 17.26 6.66 -89.70 -0.60 16.67 16 27 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 28 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.07 3.71 6.22 -2.39 -0.01 3.70 16 30 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 31 H 0.04 1.62 7.38 -2.39 -0.02 1.60 16 32 H 0.07 2.00 8.14 -2.38 -0.02 1.99 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.05 1.43 7.82 -2.39 -0.02 1.41 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 2.21 6.68 -2.39 -0.02 2.20 16 Total: -1.00 -53.28 287.52 1.81 -51.47 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.42 Total: 27.73 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.48 Total: -23.84 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.64 Total: -81.73 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.48 Total: -17.67 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -53.28 1.81 -51.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.620 kcal (2) G-P(sol) polarization free energy of solvation -53.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds