Wall clock time and date at job start Mon Mar 30 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47157 * 2 1 4 4 C 1.46907 * 110.99853 * 185.42457 * 3 2 1 5 5 C 1.50697 * 109.54217 * 58.33812 * 4 3 2 6 6 H 1.07993 * 119.99674 * 235.37682 * 5 4 3 7 7 C 1.37872 * 119.99913 * 55.38424 * 5 4 3 8 8 N 1.31515 * 120.00113 * 354.28046 * 7 5 4 9 9 Si 1.86800 * 120.00038 * 174.28916 * 7 5 4 10 10 H 1.48499 * 109.47222 * 59.99138 * 9 7 5 11 11 H 1.48500 * 109.47470 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46964 * 299.99749 * 9 7 5 13 13 C 1.53181 * 109.54044 * 178.51494 * 4 3 2 14 14 C 1.53095 * 109.16012 * 62.88802 * 13 4 3 15 15 O 1.42903 * 109.41844 * 57.60580 * 14 13 4 16 16 C 1.42896 * 114.09851 * 298.84121 * 15 14 13 17 17 H 1.09004 * 109.48046 * 301.17650 * 16 15 14 18 18 C 1.52998 * 109.48052 * 181.15107 * 16 15 14 19 19 C 1.52997 * 109.47379 * 65.00020 * 18 16 15 20 20 C 1.53175 * 109.54141 * 298.15666 * 4 3 2 21 21 H 1.08994 * 109.46973 * 299.99779 * 1 2 3 22 22 H 1.08998 * 109.46803 * 60.00013 * 1 2 3 23 23 H 1.09002 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46808 * 240.00143 * 2 1 3 25 25 H 1.08995 * 109.46877 * 120.00504 * 2 1 3 26 26 H 1.00902 * 110.99758 * 61.47043 * 3 2 1 27 27 H 0.97007 * 120.00352 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.52232 * 182.79013 * 13 4 3 29 29 H 1.08994 * 109.52118 * 302.98195 * 13 4 3 30 30 H 1.09005 * 109.47409 * 177.59057 * 14 13 4 31 31 H 1.09001 * 109.48269 * 297.60529 * 14 13 4 32 32 H 1.08999 * 109.46967 * 185.00226 * 18 16 15 33 33 H 1.08997 * 109.46998 * 304.99648 * 18 16 15 34 34 H 1.09006 * 109.47077 * 300.00420 * 19 18 16 35 35 H 1.08997 * 109.47359 * 59.99849 * 19 18 16 36 36 H 1.08996 * 109.47619 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.52045 * 57.02431 * 20 4 3 38 38 H 1.09002 * 109.51844 * 177.20477 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4824 1.4261 -0.1297 5 6 3.8954 0.7336 -1.4028 6 1 4.6056 -0.0793 -1.3693 7 6 3.3666 1.1379 -2.6102 8 7 2.4196 2.0500 -2.6409 9 14 3.9949 0.3898 -4.2024 10 1 3.7667 -1.0774 -4.1839 11 1 3.2691 0.9889 -5.3511 12 1 5.4483 0.6630 -4.3378 13 6 3.9530 2.8835 -0.1632 14 6 3.5967 3.5573 1.1645 15 8 4.1987 2.8347 2.2405 16 6 3.7604 1.4791 2.3502 17 1 2.6798 1.4567 2.4919 18 6 4.4457 0.8166 3.5470 19 6 3.9862 1.4961 4.8384 20 6 4.1232 0.7198 1.0690 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.7160 1.8758 0.8276 27 1 2.0473 2.3342 -3.4904 28 1 5.0327 2.9144 -0.3091 29 1 3.4588 3.4070 -0.9815 30 1 3.9673 4.5824 1.1628 31 1 2.5140 3.5624 1.2906 32 1 4.1806 -0.2402 3.5783 33 1 5.5265 0.9171 3.4482 34 1 4.2513 2.5530 4.8071 35 1 2.9054 1.3956 4.9372 36 1 4.4748 1.0245 5.6910 37 1 3.7506 -0.3026 1.1311 38 1 5.2063 0.7070 0.9479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:06 Heat of formation + Delta-G solvation = -55.386618 kcal Electronic energy + Delta-G solvation = -17426.521076 eV Core-core repulsion = 14882.550126 eV Total energy + Delta-G solvation = -2543.970951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16484 -35.55547 -33.51229 -32.34023 -31.08827 -29.05320 -27.33786 -25.85346 -23.29696 -22.62075 -20.93476 -20.63394 -18.28815 -16.20928 -15.71703 -15.21183 -14.65609 -14.32811 -13.80654 -13.66277 -13.31880 -13.21316 -12.82036 -12.48805 -12.10607 -11.69312 -11.45206 -11.04802 -10.90736 -10.83181 -10.72555 -10.57540 -10.55071 -10.31578 -10.10602 -10.04164 -9.65601 -9.23066 -9.16042 -8.41055 -8.21238 -6.72615 -5.78696 -3.96009 3.34125 3.39586 3.42840 4.45331 4.48477 5.23309 5.31800 5.39733 5.54868 5.66148 5.83337 5.96092 6.03566 6.05203 6.10744 6.17314 6.20838 6.28595 6.35495 6.38557 6.42391 6.49015 6.53954 6.60878 6.79757 6.95301 7.07572 7.15906 7.23800 7.43489 7.73315 7.91584 8.05431 8.29501 8.65561 8.90892 9.23140 9.69469 11.18583 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.009697 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.991935 B = 2886.907269 C = 3189.068530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 N -0.639 5.639 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.050 0.950 7 C 0.086 3.914 8 N -0.834 5.834 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.279 1.279 13 C -0.128 4.128 14 C 0.056 3.944 15 O -0.390 6.390 16 C 0.091 3.909 17 H 0.044 0.956 18 C -0.115 4.115 19 C -0.147 4.147 20 C -0.171 4.171 21 H 0.035 0.965 22 H 0.060 0.940 23 H 0.039 0.961 24 H 0.081 0.919 25 H -0.003 1.003 26 H 0.292 0.708 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -0.752 8.488 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 N -0.268 5.268 4 C 0.159 3.841 5 C -0.566 4.566 6 H 0.069 0.931 7 C -0.121 4.121 8 N -0.468 5.468 9 Si 0.702 3.298 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.166 4.166 14 C -0.021 4.021 15 O -0.310 6.310 16 C 0.033 3.967 17 H 0.062 0.938 18 C -0.152 4.152 19 C -0.204 4.204 20 C -0.211 4.211 21 H 0.054 0.946 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.015 0.985 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.301 -0.453 7.800 7.819 hybrid contribution 0.391 -0.874 -0.304 1.005 sum 0.090 -1.328 7.497 7.614 Atomic orbital electron populations 1.21746 0.97644 0.99431 1.01217 1.21606 0.92755 0.91885 0.99461 1.60736 1.12846 1.12505 1.40756 1.18465 0.83420 0.91200 0.91049 1.20735 1.26644 1.18840 0.90427 0.93143 1.24893 0.94196 0.94931 0.98041 1.70143 1.23437 1.28839 1.24415 0.86993 0.79107 0.79534 0.84187 1.20582 1.21441 1.20479 1.22123 0.99980 0.98655 0.95880 1.22742 0.96460 0.94742 0.88114 1.87765 1.68470 1.23246 1.51542 1.22104 0.96609 0.82890 0.95070 0.93784 1.21535 1.01041 0.98800 0.93859 1.21711 1.00595 1.01414 0.96693 1.22988 1.01852 0.99690 0.96607 0.94565 0.92098 0.94180 0.90033 0.98514 0.89085 0.93723 0.93322 0.88826 0.90738 0.93891 0.91379 0.91542 0.92082 0.93273 0.93426 0.92386 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.22 37.16 0.38 -2.24 16 2 C 0.07 1.54 5.68 -3.82 -0.02 1.52 16 3 N -0.64 -14.43 4.88 -100.95 -0.49 -14.92 16 4 C 0.25 5.78 0.29 -132.57 -0.04 5.74 16 5 C -0.53 -13.84 6.53 -34.44 -0.22 -14.07 16 6 H 0.05 1.35 7.75 -52.49 -0.41 0.94 16 7 C 0.09 2.29 5.14 -17.82 -0.09 2.20 16 8 N -0.83 -22.68 11.10 55.43 0.62 -22.06 16 9 Si 0.87 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.13 -2.91 4.91 -26.59 -0.13 -3.04 16 14 C 0.06 1.09 6.58 37.21 0.24 1.33 16 15 O -0.39 -7.62 9.94 -35.23 -0.35 -7.97 16 16 C 0.09 1.67 2.38 -26.59 -0.06 1.60 16 17 H 0.04 0.82 6.87 -51.93 -0.36 0.46 16 18 C -0.11 -1.75 5.64 -26.73 -0.15 -1.91 16 19 C -0.15 -1.96 9.81 37.16 0.36 -1.59 16 20 C -0.17 -3.56 3.93 -26.50 -0.10 -3.67 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.97 6.79 -51.93 -0.35 1.61 16 25 H 0.00 -0.06 6.58 -51.93 -0.34 -0.40 16 26 H 0.29 6.23 5.49 -39.29 -0.22 6.02 16 27 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 2.36 6.78 -51.93 -0.35 2.01 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.04 0.83 6.76 -51.93 -0.35 0.48 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 1.20 6.43 -51.93 -0.33 0.87 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -26.82 288.90 -7.21 -34.03 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.48 Total: 4.93 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 0.16 Total: -14.12 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.12 Total: -36.98 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.35 Total: -7.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.82 -7.21 -34.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.359 kcal (2) G-P(sol) polarization free energy of solvation -26.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds