Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47157 * 2 1 4 4 C 1.46907 * 110.99853 * 185.42457 * 3 2 1 5 5 C 1.50697 * 109.54217 * 58.33812 * 4 3 2 6 6 H 1.07993 * 119.99674 * 235.37682 * 5 4 3 7 7 C 1.37872 * 119.99913 * 55.38424 * 5 4 3 8 8 N 1.31515 * 120.00113 * 354.28046 * 7 5 4 9 9 Si 1.86800 * 120.00038 * 174.28916 * 7 5 4 10 10 H 1.48499 * 109.47222 * 59.99138 * 9 7 5 11 11 H 1.48500 * 109.47470 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46964 * 299.99749 * 9 7 5 13 13 C 1.53181 * 109.54044 * 178.51494 * 4 3 2 14 14 C 1.53095 * 109.16012 * 62.88802 * 13 4 3 15 15 O 1.42903 * 109.41844 * 57.60580 * 14 13 4 16 16 C 1.42896 * 114.09851 * 298.84121 * 15 14 13 17 17 H 1.09004 * 109.48046 * 301.17650 * 16 15 14 18 18 C 1.52998 * 109.48052 * 181.15107 * 16 15 14 19 19 C 1.52997 * 109.47379 * 65.00020 * 18 16 15 20 20 C 1.53175 * 109.54141 * 298.15666 * 4 3 2 21 21 H 1.08994 * 109.46973 * 299.99779 * 1 2 3 22 22 H 1.08998 * 109.46803 * 60.00013 * 1 2 3 23 23 H 1.09002 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46808 * 240.00143 * 2 1 3 25 25 H 1.08995 * 109.46877 * 120.00504 * 2 1 3 26 26 H 1.00902 * 110.99758 * 61.47043 * 3 2 1 27 27 H 0.97007 * 120.00352 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.52232 * 182.79013 * 13 4 3 29 29 H 1.08994 * 109.52118 * 302.98195 * 13 4 3 30 30 H 1.09005 * 109.47409 * 177.59057 * 14 13 4 31 31 H 1.09001 * 109.48269 * 297.60529 * 14 13 4 32 32 H 1.08999 * 109.46967 * 185.00226 * 18 16 15 33 33 H 1.08997 * 109.46998 * 304.99648 * 18 16 15 34 34 H 1.09006 * 109.47077 * 300.00420 * 19 18 16 35 35 H 1.08997 * 109.47359 * 59.99849 * 19 18 16 36 36 H 1.08996 * 109.47619 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.52045 * 57.02431 * 20 4 3 38 38 H 1.09002 * 109.51844 * 177.20477 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4824 1.4261 -0.1297 5 6 3.8954 0.7336 -1.4028 6 1 4.6056 -0.0793 -1.3693 7 6 3.3666 1.1379 -2.6102 8 7 2.4196 2.0500 -2.6409 9 14 3.9949 0.3898 -4.2024 10 1 3.7667 -1.0774 -4.1839 11 1 3.2691 0.9889 -5.3511 12 1 5.4483 0.6630 -4.3378 13 6 3.9530 2.8835 -0.1632 14 6 3.5967 3.5573 1.1645 15 8 4.1987 2.8347 2.2405 16 6 3.7604 1.4791 2.3502 17 1 2.6798 1.4567 2.4919 18 6 4.4457 0.8166 3.5470 19 6 3.9862 1.4961 4.8384 20 6 4.1232 0.7198 1.0690 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.7160 1.8758 0.8276 27 1 2.0473 2.3342 -3.4904 28 1 5.0327 2.9144 -0.3091 29 1 3.4588 3.4070 -0.9815 30 1 3.9673 4.5824 1.1628 31 1 2.5140 3.5624 1.2906 32 1 4.1806 -0.2402 3.5783 33 1 5.5265 0.9171 3.4482 34 1 4.2513 2.5530 4.8071 35 1 2.9054 1.3956 4.9372 36 1 4.4748 1.0245 5.6910 37 1 3.7506 -0.3026 1.1311 38 1 5.2063 0.7070 0.9479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -71.458402 kcal Electronic energy + Delta-G solvation = -17427.218001 eV Core-core repulsion = 14882.550126 eV Total energy + Delta-G solvation = -2544.667876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80262 -37.24495 -34.87522 -34.19004 -32.89040 -30.53927 -28.97022 -27.75084 -24.78300 -24.31183 -22.59146 -22.06385 -20.06891 -18.11757 -17.22457 -16.95207 -16.34767 -16.15156 -15.51999 -15.17077 -14.92510 -14.52942 -14.40611 -13.91071 -13.83090 -13.36416 -12.89363 -12.83032 -12.63841 -12.35657 -12.31614 -12.18545 -12.10670 -11.95157 -11.78821 -11.71864 -11.40515 -10.99663 -10.85135 -10.40144 -9.98167 -8.49914 -7.80952 -6.04048 1.41172 1.44136 1.48815 2.49269 2.97583 3.30946 3.84421 4.00463 4.12986 4.27526 4.37389 4.45256 4.48281 4.53894 4.61618 4.70486 4.76908 4.78381 4.84986 4.92268 5.05938 5.10296 5.14497 5.21354 5.24040 5.39449 5.42738 5.47892 5.53844 5.64692 5.79210 5.95442 6.35077 6.47125 6.73932 7.04156 7.40722 7.63284 9.12301 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.009697 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.991935 B = 2886.907269 C = 3189.068530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 N -0.649 5.649 4 C 0.240 3.760 5 C -0.541 4.541 6 H 0.035 0.965 7 C 0.050 3.950 8 N -0.852 5.852 9 Si 0.923 3.077 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.280 1.280 13 C -0.123 4.123 14 C 0.065 3.935 15 O -0.392 6.392 16 C 0.094 3.906 17 H 0.048 0.952 18 C -0.113 4.113 19 C -0.142 4.142 20 C -0.163 4.163 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.009 0.991 26 H 0.301 0.699 27 H 0.250 0.750 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -1.026 10.046 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 N -0.279 5.279 4 C 0.150 3.850 5 C -0.580 4.580 6 H 0.053 0.947 7 C -0.155 4.155 8 N -0.487 5.487 9 Si 0.750 3.250 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.206 1.206 13 C -0.162 4.162 14 C -0.012 4.012 15 O -0.312 6.312 16 C 0.036 3.964 17 H 0.065 0.935 18 C -0.150 4.150 19 C -0.199 4.199 20 C -0.203 4.203 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.027 0.973 26 H 0.119 0.881 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.701 -0.733 9.364 9.418 hybrid contribution 0.545 -0.826 -0.796 1.270 sum -0.156 -1.559 8.568 8.710 Atomic orbital electron populations 1.21640 0.95263 1.00988 1.01097 1.21541 0.94676 0.90949 0.98255 1.60614 1.12364 1.13506 1.41440 1.18451 0.84230 0.91376 0.90905 1.20987 1.26224 1.18559 0.92207 0.94667 1.25375 0.94484 0.95433 1.00192 1.70244 1.24173 1.29676 1.24558 0.86212 0.78440 0.78763 0.81539 1.20596 1.21222 1.20561 1.21976 0.98526 0.98629 0.97053 1.22645 0.96854 0.95415 0.86259 1.87782 1.68643 1.23773 1.51002 1.22178 0.97156 0.82143 0.94910 0.93453 1.21550 1.00569 0.99470 0.93423 1.21667 1.01203 1.00753 0.96261 1.22848 1.00566 0.99741 0.97182 0.92694 0.94093 0.91829 0.93520 0.97316 0.88103 0.94096 0.94894 0.91513 0.88595 0.93376 0.90021 0.91861 0.93007 0.92641 0.91175 0.92548 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 10.22 71.98 0.74 -3.89 16 2 C 0.08 3.15 5.68 86.30 0.49 3.64 16 3 N -0.65 -29.03 4.88 -473.30 -2.31 -31.34 16 4 C 0.24 11.23 0.29 2.90 0.00 11.23 16 5 C -0.54 -28.91 6.53 25.60 0.17 -28.74 16 6 H 0.04 1.93 7.75 -2.91 -0.02 1.91 16 7 C 0.05 2.69 5.14 84.65 0.44 3.13 16 8 N -0.85 -46.94 11.10 21.45 0.24 -46.70 16 9 Si 0.92 43.29 29.54 68.60 2.03 45.32 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C -0.12 -5.64 4.91 30.69 0.15 -5.49 16 14 C 0.06 2.44 6.58 72.01 0.47 2.91 16 15 O -0.39 -14.59 9.94 -148.98 -1.48 -16.08 16 16 C 0.09 3.26 2.38 30.69 0.07 3.33 16 17 H 0.05 1.64 6.87 -2.38 -0.02 1.62 16 18 C -0.11 -3.15 5.64 30.59 0.17 -2.98 16 19 C -0.14 -3.32 9.81 71.98 0.71 -2.61 16 20 C -0.16 -6.71 3.93 30.75 0.12 -6.59 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 2.27 6.79 -2.38 -0.02 2.25 16 25 H 0.01 0.35 6.58 -2.39 -0.02 0.33 16 26 H 0.30 12.46 5.49 -89.69 -0.49 11.97 16 27 H 0.25 13.46 8.31 -92.70 -0.77 12.68 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 3.42 6.78 -2.39 -0.02 3.40 16 30 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 31 H 0.05 1.78 6.76 -2.39 -0.02 1.76 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.31 7.82 -2.38 -0.02 1.29 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 2.30 6.43 -2.39 -0.02 2.28 16 38 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -57.01 288.90 2.52 -54.48 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.53 Total: 20.39 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.53 Total: -26.07 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -2.07 Total: -78.04 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.48 Total: -16.08 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -57.01 2.52 -54.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.978 kcal (2) G-P(sol) polarization free energy of solvation -57.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds